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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810201 8rhf:B (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810202 8rhf:B (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810203 8rhf:B (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810204 8rhf:B (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810205 8rhi:A (1.98) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810206 8rhi:A (1.98) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810207 8rhi:A (1.98) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810208 8rhi:A (1.98) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810209 8rhi:A (1.98) BS05 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810210 8rhi:B (1.98) BS01 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810211 8rhi:B (1.98) BS02 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810212 8rhi:B (1.98) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810213 8rhi:B (1.98) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810214 8rhj:G (3.05) BS01 MG ? GO:0000502 ... P21243 38628795
    810215 8rhj:H (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810216 8rhj:H (3.05) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810217 8rhj:K (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    810218 8rhj:K (3.05) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    810219 8rhj:L (3.05) BS01 peptide ? GO:0000502 ... P23724 38628795
    810220 8rhj:N (3.05) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    810221 8rhj:V (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810222 8rhj:V (3.05) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810223 8rhj:V (3.05) BS03 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    810224 8rhj:Y (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    810225 8rhj:Y (3.05) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    810226 8rhj:Z (3.05) BS01 peptide ? GO:0000502 ... P23724 38628795
    810227 8rhj:Z (3.05) BS02 MG ? GO:0000502 ... P23724 38628795
    810228 8rhj:b (3.05) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    810229 8rhk:G (2.8) BS01 MG ? GO:0000502 ... P21243 38628795
    810230 8rhk:H (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810231 8rhk:I (2.8) BS01 peptide ? GO:0000502 ... P25451 38628795
    810232 8rhk:I (2.8) BS02 MG ? GO:0000502 ... P25451 38628795
    810233 8rhk:K (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    810234 8rhk:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    810235 8rhk:L (2.8) BS01 peptide ? GO:0000502 ... P23724 38628795
    810236 8rhk:N (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    810237 8rhk:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 38628795
    810238 8rhk:V (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810239 8rhk:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    810240 8rhk:W (2.8) BS01 peptide ? GO:0000502 ... P25451 38628795
    810241 8rhk:Y (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    810242 8rhk:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    810243 8rhk:Z (2.8) BS01 peptide ? GO:0000502 ... P23724 38628795
    810244 8rhk:b (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    810245 8rhl:G (3.2) BS01 MG ? GO:0000502 ... P21243 38628795
    810246 8rhl:H (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810247 8rhl:I (3.2) BS01 MG ? GO:0000502 ... P25451 38628795
    810248 8rhl:K (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    810249 8rhl:K (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    810250 8rhl:L (3.2) BS01 peptide ? GO:0000502 ... P23724 38628795
    810251 8rhl:N (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 38628795
    810252 8rhl:V (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    810253 8rhl:V (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    810254 8rhl:Y (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    810255 8rhl:Y (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    810256 8rhl:Z (3.2) BS01 peptide ? GO:0000502 ... P23724 38628795
    810257 8rhl:Z (3.2) BS02 MG ? GO:0000502 ... P23724 38628795
    810258 8rhq:A (2.0) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    810259 8rhq:C (2.0) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    810260 8rhq:D (2.0) BS01 MG ? GO:0000139 ... P61769 38742159
    810261 8rhq:E (2.0) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    810262 8rhr:A (1.42) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 38574272
    810263 8rhr:A (1.42) BS02 BB4 3.5.1.88 GO:0005515 ... P0A6K3 38574272
    810264 8rhz:C (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    810265 8rhz:C (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    810266 8rhz:C (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    810267 8rhz:D (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    810268 8rhz:D (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    810269 8rhz:D (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    810270 8ri0:A (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    810271 8ri0:B (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    810272 8ri2:A (2.8) BS01 A1H02 3.6.4.- N/A Q96P20 38175811
    810273 8ri2:A (2.8) BS02 ADP 3.6.4.- N/A Q96P20 38175811
    810274 8rij:A (1.96) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    810275 8rij:A (1.96) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    810276 8rij:A (1.96) BS03 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    810277 8rij:A (1.96) BS04 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    810278 8rij:A (1.96) BS05 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    810279 8rij:A (1.96) BS06 A1H07 3.4.24.65 GO:0004222 ... P39900 38348661
    810280 8riv:A (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    810281 8riv:A (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    810282 8riv:A (2.78) BS03 A1H01 3.6.5.- GO:0000226 ... P81947 38487227
    810283 8riv:B (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    810284 8riv:B (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    810285 8riv:C (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    810286 8riv:C (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    810287 8riv:D (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    810288 8riv:D (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    810289 8riv:F (2.78) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38487227
    810290 8riw:A (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    810291 8riw:A (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    810292 8riw:B (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    810293 8riw:B (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    810294 8riw:C (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    810295 8riw:C (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    810296 8riw:D (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    810297 8riw:D (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    810298 8riw:F (2.57) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38487227
    810299 8riy:AAA (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    810300 8riy:AAA (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    810301 8riy:BBB (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    810302 8riy:BBB (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    810303 8rjb:1 (2.69243) BS01 rna ? GO:0005048 ... P38377 38896445
    810304 8rjb:4 (2.69243) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    810305 8rjb:A (2.69243) BS01 rna ? GO:0002181 ... G1TT27 38896445
    810306 8rjb:C (2.69243) BS01 peptide ? GO:0003723 ... A0A5F9C3C5 38896445
    810307 8rjb:C (2.69243) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    810308 8rjb:C (2.69243) BS03 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    810309 8rjb:D (2.69243) BS01 rna ? GO:0000027 ... P19949 38896445
    810310 8rjb:D (2.69243) BS02 rna ? GO:0000027 ... P19949 38896445
    810311 8rjb:E (2.69243) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    810312 8rjb:F (2.69243) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    810313 8rjb:F (2.69243) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    810314 8rjb:G (2.69243) BS01 rna ? GO:0000470 ... G1STW0 38896445
    810315 8rjb:G (2.69243) BS02 rna ? GO:0000470 ... G1STW0 38896445
    810316 8rjb:H (2.69243) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    810317 8rjb:I (2.69243) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    810318 8rjb:I (2.69243) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    810319 8rjb:J (2.69243) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    810320 8rjb:J (2.69243) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    810321 8rjb:J (2.69243) BS03 rna ? GO:0003723 ... G1TUB8 38896445
    810322 8rjb:L (2.69243) BS01 rna ? GO:0003735 ... G1TPV0 38896445
    810323 8rjb:L (2.69243) BS02 rna ? GO:0003735 ... G1TPV0 38896445
    810324 8rjb:M (2.69243) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    810325 8rjb:N (2.69243) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    810326 8rjb:N (2.69243) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    810327 8rjb:P (2.69243) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    810328 8rjb:P (2.69243) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    810329 8rjb:R (2.69243) BS01 rna ? GO:0003723 ... G1TJR3 38896445
    810330 8rjb:S (2.69243) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    810331 8rjb:S (2.69243) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    810332 8rjb:T (2.69243) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    810333 8rjb:T (2.69243) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    810334 8rjb:U (2.69243) BS01 rna ? GO:0002181 ... G1TSG1 38896445
    810335 8rjb:V (2.69243) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    810336 8rjb:W (2.69243) BS01 rna ? GO:0000027 ... G1SE28 38896445
    810337 8rjb:X (2.69243) BS01 rna ? GO:0000027 ... G1SE76 38896445
    810338 8rjb:X (2.69243) BS02 rna ? GO:0000027 ... G1SE76 38896445
    810339 8rjb:Y (2.69243) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    810340 8rjb:Y (2.69243) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    810341 8rjb:Z (2.69243) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    810342 8rjb:a (2.69243) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    810343 8rjb:b (2.69243) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    810344 8rjb:c (2.69243) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    810345 8rjb:d (2.69243) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    810346 8rjb:e (2.69243) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    810347 8rjb:f (2.69243) BS01 rna ? GO:0000049 ... G1SF08 38896445
    810348 8rjb:g (2.69243) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    810349 8rjb:g (2.69243) BS02 ZN ? GO:0003735 ... G1TXG5 38896445
    810350 8rjb:g (2.69243) BS03 MG ? GO:0003735 ... G1TXG5 38896445
    810351 8rjb:h (2.69243) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    810352 8rjb:h (2.69243) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    810353 8rjb:i (2.69243) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    810354 8rjb:j (2.69243) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    810355 8rjb:j (2.69243) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    810356 8rjb:j (2.69243) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    810357 8rjb:k (2.69243) BS01 rna ? GO:0003735 ... G1U001 38896445
    810358 8rjb:l (2.69243) BS01 peptide ? GO:0003735 ... G1TTN1 38896445
    810359 8rjb:l (2.69243) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    810360 8rjb:l (2.69243) BS03 rna ? GO:0003735 ... G1TTN1 38896445
    810361 8rjb:o (2.69243) BS01 rna ? GO:0003735 ... G1T040 38896445
    810362 8rjb:o (2.69243) BS02 ZN ? GO:0003735 ... G1T040 38896445
    810363 8rjb:p (2.69243) BS01 rna ? GO:0003735 ... G1SY53 38896445
    810364 8rjb:p (2.69243) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    810365 8rjb:r (2.69243) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    810366 8rjb:w (2.69243) BS01 rna ? GO:0003723 ... G1TL06 38896445
    810367 8rjc:1 (2.90061) BS01 rna ? GO:0005048 ... P38377 38896445
    810368 8rjc:4 (2.90061) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    810369 8rjc:5 (2.90061) BS01 rna ? GO:0005789 ... P16967 38896445
    810370 8rjc:7 (2.90061) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    810371 8rjc:A (2.90061) BS01 rna ? GO:0002181 ... G1TT27 38896445
    810372 8rjc:C (2.90061) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    810373 8rjc:C (2.90061) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    810374 8rjc:D (2.90061) BS01 rna ? GO:0000027 ... P19949 38896445
    810375 8rjc:D (2.90061) BS02 rna ? GO:0000027 ... P19949 38896445
    810376 8rjc:E (2.90061) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    810377 8rjc:F (2.90061) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    810378 8rjc:F (2.90061) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    810379 8rjc:G (2.90061) BS01 rna ? GO:0000470 ... G1STW0 38896445
    810380 8rjc:G (2.90061) BS02 rna ? GO:0000470 ... G1STW0 38896445
    810381 8rjc:H (2.90061) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    810382 8rjc:I (2.90061) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    810383 8rjc:I (2.90061) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    810384 8rjc:J (2.90061) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    810385 8rjc:J (2.90061) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    810386 8rjc:L (2.90061) BS01 rna ? GO:0003723 ... G1TKB3 38896445
    810387 8rjc:L (2.90061) BS02 rna ? GO:0003723 ... G1TKB3 38896445
    810388 8rjc:M (2.90061) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    810389 8rjc:N (2.90061) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    810390 8rjc:N (2.90061) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    810391 8rjc:P (2.90061) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    810392 8rjc:P (2.90061) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    810393 8rjc:Q (2.90061) BS01 rna ? GO:0002181 ... G1TFE0 38896445
    810394 8rjc:R (2.90061) BS01 rna ? GO:0003723 ... G1TJR3 38896445
    810395 8rjc:S (2.90061) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    810396 8rjc:S (2.90061) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    810397 8rjc:T (2.90061) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    810398 8rjc:T (2.90061) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    810399 8rjc:U (2.90061) BS01 rna ? GO:0002181 ... G1TSG1 38896445
    810400 8rjc:V (2.90061) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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