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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810001 8re0:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810002 8re0:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    810003 8re2:A (2.2) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    810004 8re2:A (2.2) BS02 MG ? GO:0004601 ... Q9RZ08 38257271
    810005 8re2:A (2.2) BS03 MG ? GO:0004601 ... Q9RZ08 38257271
    810006 8re2:A (2.2) BS04 MG ? GO:0004601 ... Q9RZ08 38257271
    810007 8re3:A (1.51) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    810008 8re3:B (1.51) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    810009 8re4:C (2.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810010 8re4:C (2.8) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810011 8re4:C (2.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810012 8re4:D (2.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810013 8re4:D (2.8) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810014 8re4:D (2.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810015 8re4:D (2.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810016 8re4:D (2.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810017 8re4:M (2.8) BS01 dna ? GO:0001216 ... P06223 38170755
    810018 8re4:M (2.8) BS02 dna ? GO:0001216 ... P06223 38170755
    810019 8rea:C (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810020 8rea:C (3.4) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810021 8rea:C (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810022 8rea:D (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810023 8rea:D (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810024 8rea:D (3.4) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810025 8rea:D (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810026 8rea:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810027 8rea:M (3.4) BS01 dna ? GO:0001216 ... P06223 38170755
    810028 8rea:M (3.4) BS02 dna ? GO:0001216 ... P06223 38170755
    810029 8reb:C (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810030 8reb:C (3.4) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810031 8reb:C (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810032 8reb:D (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810033 8reb:D (3.4) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810034 8reb:D (3.4) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810035 8reb:D (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810036 8reb:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810037 8reb:M (3.4) BS01 dna ? GO:0001216 ... P06223 38170755
    810038 8reb:M (3.4) BS02 dna ? GO:0001216 ... P06223 38170755
    810039 8rec:C (3.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810040 8rec:C (3.5) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810041 8rec:C (3.5) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810042 8rec:D (3.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810043 8rec:D (3.5) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810044 8rec:D (3.5) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810045 8rec:D (3.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810046 8rec:D (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810047 8rec:M (3.5) BS01 dna ? GO:0001216 ... P06223 38170755
    810048 8rec:M (3.5) BS02 rna ? GO:0001216 ... P06223 38170755
    810049 8rec:M (3.5) BS03 dna ? GO:0001216 ... P06223 38170755
    810050 8red:C (3.9) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810051 8red:C (3.9) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810052 8red:C (3.9) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810053 8red:D (3.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810054 8red:D (3.9) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810055 8red:D (3.9) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810056 8red:D (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810057 8red:M (3.9) BS01 dna ? GO:0001216 ... P06223 38170755
    810058 8red:M (3.9) BS02 dna ? GO:0001216 ... P06223 38170755
    810059 8ree:C (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810060 8ree:C (3.8) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810061 8ree:C (3.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38170755
    810062 8ree:D (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810063 8ree:D (3.8) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810064 8ree:D (3.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810065 8ree:D (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810066 8ree:D (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    810067 8ree:M (3.8) BS01 dna ? GO:0001216 ... P06223 38170755
    810068 8ree:M (3.8) BS02 dna ? GO:0001216 ... P06223 38170755
    810069 8ref:A (1.9) BS01 peptide ? GO:0006955 ... C5IYE8 38742159
    810070 8rev:A (3.1) BS01 dna 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    810071 8rev:A (3.1) BS02 dna 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    810072 8rev:A (3.1) BS03 SF4 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    810073 8rev:A (3.1) BS04 ADP 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    810074 8rfh:A (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 N/A
    810075 8rfh:B (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 N/A
    810076 8rfk:A (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810077 8rfk:A (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810078 8rfk:A (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810079 8rfk:A (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    810080 8rfk:B (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810081 8rfk:B (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810082 8rfk:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810083 8rfk:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    810084 8rfm:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810085 8rfm:A (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810086 8rfm:B (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810087 8rfm:B (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810088 8rfm:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810089 8rfm:C (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810090 8rfm:C (2.7) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810091 8rfm:D (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810092 8rfm:D (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810093 8rfn:A (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810094 8rfn:B (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810095 8rfn:C (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810096 8rfn:C (2.5) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810097 8rfn:D (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    810098 8rg1:A (1.19) BS01 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    810099 8rg1:A (1.19) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810100 8rg1:A (1.19) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810101 8rg1:A (1.19) BS04 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810102 8rg1:B (1.19) BS01 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    810103 8rg1:B (1.19) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810104 8rg1:B (1.19) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810105 8rg1:B (1.19) BS04 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    810106 8rgh:A (3.9) BS01 peptide 2.1.1.63 GO:0001822 ... P16455
    Q8NCM8
    38454149
    810107 8rgh:C (3.9) BS01 peptide ? GO:0000242 ... Q8WVS4 38454149
    810108 8rgp:1 (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810109 8rgp:1 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810110 8rgp:2 (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    810111 8rgp:3 (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810112 8rgp:3 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810113 8rgp:3 (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810114 8rgp:6 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    810115 8rgp:6 (3.0) BS02 UQ 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    810116 8rgp:7 (3.0) BS01 ZN ? GO:0001822 ... P52503 38575788
    810117 8rgp:9 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810118 8rgp:9 (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810119 8rgp:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    810120 8rgp:D (3.0) BS02 UQ 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    810121 8rgp:H (3.0) BS01 UQ 7.1.1.2 GO:0001666 ... P03888 38575788
    810122 8rgp:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    810123 8rgp:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    810124 8rgp:W (3.0) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    810125 8rgp:n (3.0) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    810126 8rgq:1 (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810127 8rgq:1 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810128 8rgq:2 (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    810129 8rgq:3 (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810130 8rgq:3 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810131 8rgq:3 (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810132 8rgq:6 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    810133 8rgq:7 (3.0) BS01 ZN ? GO:0001822 ... P52503 38575788
    810134 8rgq:9 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810135 8rgq:9 (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810136 8rgq:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    810137 8rgq:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    810138 8rgq:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    810139 8rgq:W (3.0) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    810140 8rgq:n (3.0) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    810141 8rgr:1 (2.9) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810142 8rgr:1 (2.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810143 8rgr:2 (2.9) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    810144 8rgr:3 (2.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810145 8rgr:3 (2.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810146 8rgr:3 (2.9) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810147 8rgr:6 (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    810148 8rgr:6 (2.9) BS02 UQ 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    810149 8rgr:7 (2.9) BS01 ZN ? GO:0001822 ... P52503 38575788
    810150 8rgr:9 (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810151 8rgr:9 (2.9) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810152 8rgr:D (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    810153 8rgr:D (2.9) BS02 UQ 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    810154 8rgr:H (2.9) BS01 UQ 7.1.1.2 GO:0001666 ... P03888 38575788
    810155 8rgr:O (2.9) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    810156 8rgr:P (2.9) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    810157 8rgr:W (2.9) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    810158 8rgr:n (2.9) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    810159 8rgs:A (1.79) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... A0A7U9DT46 38488731
    810160 8rgs:B (1.79) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... A0A7U9DT46 38488731
    810161 8rgt:1 (3.1) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810162 8rgt:1 (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    810163 8rgt:2 (3.1) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    810164 8rgt:3 (3.1) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810165 8rgt:3 (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810166 8rgt:3 (3.1) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    810167 8rgt:6 (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    810168 8rgt:7 (3.1) BS01 ZN ? GO:0001822 ... P52503 38575788
    810169 8rgt:9 (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810170 8rgt:9 (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    810171 8rgt:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    810172 8rgt:O (3.1) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    810173 8rgt:P (3.1) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    810174 8rgt:T (3.1) BS01 ZMP ? GO:0005654 ... Q9CR21 38575788
    810175 8rgt:W (3.1) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    810176 8rgt:n (3.1) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    810177 8rgw:A (1.88) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... A0A7U9DT46 38488731
    810178 8rgw:B (1.88) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... A0A7U9DT46 38488731
    810179 8rgy:A (2.07) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... A0A7U9DT46 38488731
    810180 8rgy:B (2.07) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... A0A7U9DT46 38488731
    810181 8rh3:A (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    810182 8rh3:B (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    810183 8rh3:B (1.96) BS02 A1H0F ? GO:0009159 ... K9TVX3 38449528
    810184 8rh3:C (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    810185 8rh3:D (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    810186 8rh6:A (3.32) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    810187 8rh6:C (3.32) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    810188 8rh6:E (3.32) BS01 peptide ? GO:0006955 ... Q5S3G3 38742159
    810189 8rhe:A (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810190 8rhe:A (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810191 8rhe:A (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810192 8rhe:A (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810193 8rhe:B (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810194 8rhe:B (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810195 8rhe:B (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810196 8rhe:B (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810197 8rhf:A (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810198 8rhf:A (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810199 8rhf:A (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    810200 8rhf:A (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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