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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809401 8rbx:f (4.1) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    809402 8rbx:f (4.1) BS02 MN ? GO:0004888 ... Q9UL03 38570683
    809403 8rbx:g (4.1) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    809404 8rbx:g (4.1) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    809405 8rbx:k (4.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    809406 8rbx:k (4.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    809407 8rbx:q (4.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    809408 8rbx:v (4.1) BS01 peptide ? GO:0003723 ... Q8WX92 38570683
    809409 8rbz:b (3.7) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    809410 8rbz:c (3.7) BS01 peptide ? GO:0000724 ... Q68E01 38570683
    809411 8rbz:f (3.7) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    809412 8rbz:g (3.7) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    809413 8rbz:g (3.7) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    809414 8rbz:k (3.7) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    809415 8rbz:k (3.7) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    809416 8rbz:q (3.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    809417 8rbz:q (3.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    809418 8rc0:A (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38467877
    809419 8rc0:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467877
    809420 8rc0:E (3.2) BS01 rna ? GO:0000244 ... O94906 38467877
    809421 8rc0:h (3.2) BS01 rna ? GO:0000387 ... P14678 38467877
    809422 8rc0:i (3.2) BS01 rna ? GO:0000243 ... P62314 38467877
    809423 8rc0:j (3.2) BS01 rna ? GO:0000245 ... P62316 38467877
    809424 8rc0:m (3.2) BS01 rna ? GO:0000387 ... P62306 38467877
    809425 8rc0:n (3.2) BS01 rna ? GO:0000245 ... P62308 38467877
    809426 8rc1:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    809427 8rc1:B (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    809428 8rc1:C (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    809429 8rc1:D (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    809430 8rc4:k (3.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    809431 8rc4:k (3.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    809432 8rc4:q (3.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    809433 8rc4:q (3.1) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    809434 8rcg:A (2.005) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    809435 8rcg:A (2.005) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    809436 8rcg:A (2.005) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    809437 8rcg:B (2.005) BS01 SF4 ? GO:0046872 ... Q72EJ0 38699971
    809438 8rcg:B (2.005) BS02 SF4 ? GO:0046872 ... Q72EJ0 38699971
    809439 8rcg:B (2.005) BS03 SF4 ? GO:0046872 ... Q72EJ0 38699971
    809440 8rcl:12 (3.49) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    809441 8rcl:32 (3.49) BS01 rna ? GO:0000027 ... P0AG51 38409277
    809442 8rcl:32 (3.49) BS02 rna ? GO:0000027 ... P0AG51 38409277
    809443 8rcl:4 (3.49) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    809444 8rcl:4 (3.49) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    809445 8rcl:4 (3.49) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    809446 8rcl:62 (3.49) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    809447 8rcl:B (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    809448 8rcl:B (3.49) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    809449 8rcl:B (3.49) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    809450 8rcl:B2 (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    809451 8rcl:C1 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    809452 8rcl:C1 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    809453 8rcl:C2 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    809454 8rcl:C2 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    809455 8rcl:D1 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    809456 8rcl:D2 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    809457 8rcl:E1 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    809458 8rcl:E1 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    809459 8rcl:E2 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    809460 8rcl:E2 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    809461 8rcl:F1 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    809462 8rcl:F2 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    809463 8rcl:G1 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    809464 8rcl:G1 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    809465 8rcl:G2 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    809466 8rcl:G2 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    809467 8rcl:G2 (3.49) BS03 rna ? GO:0000028 ... P02359 38409277
    809468 8rcl:H1 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    809469 8rcl:H2 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    809470 8rcl:I1 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    809471 8rcl:I1 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    809472 8rcl:I2 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    809473 8rcl:I2 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    809474 8rcl:J1 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    809475 8rcl:J2 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    809476 8rcl:K1 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    809477 8rcl:K2 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    809478 8rcl:L1 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    809479 8rcl:L2 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    809480 8rcl:M1 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    809481 8rcl:M2 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    809482 8rcl:M2 (3.49) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    809483 8rcl:N1 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    809484 8rcl:N2 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    809485 8rcl:O1 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    809486 8rcl:O2 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    809487 8rcl:O2 (3.49) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    809488 8rcl:P1 (3.49) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    809489 8rcl:Q1 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    809490 8rcl:Q2 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    809491 8rcl:R1 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    809492 8rcl:R2 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    809493 8rcl:S1 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    809494 8rcl:S2 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    809495 8rcl:T1 (3.49) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    809496 8rcl:U1 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    809497 8rcl:U1 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    809498 8rcl:U2 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    809499 8rcl:U2 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    809500 8rcl:a2 (3.49) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    809501 8rcl:b2 (3.49) BS01 rna ? GO:0000027 ... P60422 38409277
    809502 8rcl:b2 (3.49) BS02 rna ? GO:0000027 ... P60422 38409277
    809503 8rcl:e2 (3.49) BS01 rna ? GO:0000027 ... P62399 38409277
    809504 8rcl:e2 (3.49) BS02 rna ? GO:0000027 ... P62399 38409277
    809505 8rcl:e2 (3.49) BS03 rna ? GO:0000027 ... P62399 38409277
    809506 8rcl:g2 (3.49) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    809507 8rcl:h2 (3.49) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    809508 8rcl:h2 (3.49) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    809509 8rcl:i2 (3.49) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    809510 8rcl:i2 (3.49) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    809511 8rcl:l2 (3.49) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    809512 8rcl:o2 (3.49) BS01 rna ? GO:0002181 ... P02413 38409277
    809513 8rcl:o2 (3.49) BS02 MG ? GO:0002181 ... P02413 38409277
    809514 8rcl:r2 (3.49) BS01 rna ? GO:0002181 ... P0C018 38409277
    809515 8rcl:r2 (3.49) BS02 rna ? GO:0002181 ... P0C018 38409277
    809516 8rcl:z2 (3.49) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    809517 8rcm:12 (3.59) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    809518 8rcm:32 (3.59) BS01 rna ? GO:0000027 ... P0AG51 38409277
    809519 8rcm:32 (3.59) BS02 rna ? GO:0000027 ... P0AG51 38409277
    809520 8rcm:4 (3.59) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    809521 8rcm:4 (3.59) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    809522 8rcm:4 (3.59) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    809523 8rcm:62 (3.59) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    809524 8rcm:B (3.59) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    809525 8rcm:B2 (3.59) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    809526 8rcm:C1 (3.59) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    809527 8rcm:C1 (3.59) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    809528 8rcm:C2 (3.59) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    809529 8rcm:C2 (3.59) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    809530 8rcm:D1 (3.59) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    809531 8rcm:D1 (3.59) BS02 rna ? GO:0000028 ... P0A7V8 38409277
    809532 8rcm:D2 (3.59) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    809533 8rcm:E1 (3.59) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    809534 8rcm:E1 (3.59) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    809535 8rcm:E2 (3.59) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    809536 8rcm:E2 (3.59) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    809537 8rcm:F1 (3.59) BS01 rna ? GO:0002181 ... P02358 38409277
    809538 8rcm:F2 (3.59) BS01 rna ? GO:0002181 ... P02358 38409277
    809539 8rcm:G1 (3.59) BS01 rna ? GO:0000028 ... P02359 38409277
    809540 8rcm:G1 (3.59) BS02 rna ? GO:0000028 ... P02359 38409277
    809541 8rcm:G2 (3.59) BS01 rna ? GO:0000028 ... P02359 38409277
    809542 8rcm:G2 (3.59) BS02 rna ? GO:0000028 ... P02359 38409277
    809543 8rcm:G2 (3.59) BS03 rna ? GO:0000028 ... P02359 38409277
    809544 8rcm:H1 (3.59) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    809545 8rcm:H2 (3.59) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    809546 8rcm:I1 (3.59) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    809547 8rcm:I1 (3.59) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    809548 8rcm:I2 (3.59) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    809549 8rcm:I2 (3.59) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    809550 8rcm:J1 (3.59) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    809551 8rcm:J2 (3.59) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    809552 8rcm:K1 (3.59) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    809553 8rcm:K2 (3.59) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    809554 8rcm:L1 (3.59) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    809555 8rcm:L2 (3.59) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    809556 8rcm:M1 (3.59) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    809557 8rcm:M2 (3.59) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    809558 8rcm:M2 (3.59) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    809559 8rcm:N1 (3.59) BS01 rna ? GO:0000028 ... P0AG59 38409277
    809560 8rcm:N2 (3.59) BS01 rna ? GO:0000028 ... P0AG59 38409277
    809561 8rcm:O1 (3.59) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    809562 8rcm:O2 (3.59) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    809563 8rcm:O2 (3.59) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    809564 8rcm:P1 (3.59) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    809565 8rcm:Q1 (3.59) BS01 rna ? GO:0000028 ... P0AG63 38409277
    809566 8rcm:Q2 (3.59) BS01 rna ? GO:0000028 ... P0AG63 38409277
    809567 8rcm:R1 (3.59) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    809568 8rcm:R2 (3.59) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    809569 8rcm:S1 (3.59) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    809570 8rcm:S2 (3.59) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    809571 8rcm:T1 (3.59) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    809572 8rcm:U1 (3.59) BS01 rna ? GO:0000028 ... P68679 38409277
    809573 8rcm:U1 (3.59) BS02 rna ? GO:0000028 ... P68679 38409277
    809574 8rcm:U2 (3.59) BS01 rna ? GO:0000028 ... P68679 38409277
    809575 8rcm:U2 (3.59) BS02 rna ? GO:0000028 ... P68679 38409277
    809576 8rcm:a2 (3.59) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    809577 8rcm:b2 (3.59) BS01 rna ? GO:0000027 ... P60422 38409277
    809578 8rcm:b2 (3.59) BS02 rna ? GO:0000027 ... P60422 38409277
    809579 8rcm:e2 (3.59) BS01 rna ? GO:0000027 ... P62399 38409277
    809580 8rcm:e2 (3.59) BS02 rna ? GO:0000027 ... P62399 38409277
    809581 8rcm:e2 (3.59) BS03 rna ? GO:0000027 ... P62399 38409277
    809582 8rcm:g2 (3.59) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    809583 8rcm:h2 (3.59) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    809584 8rcm:h2 (3.59) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    809585 8rcm:i2 (3.59) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    809586 8rcm:i2 (3.59) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    809587 8rcm:l2 (3.59) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    809588 8rcm:o2 (3.59) BS01 rna ? GO:0002181 ... P02413 38409277
    809589 8rcm:r2 (3.59) BS01 rna ? GO:0002181 ... P0C018 38409277
    809590 8rcm:r2 (3.59) BS02 rna ? GO:0002181 ... P0C018 38409277
    809591 8rcm:z2 (3.59) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    809592 8rcm:z2 (3.59) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    809593 8rcs:12 (4.46) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    809594 8rcs:12 (4.46) BS02 rna ? GO:0000027 ... P0A7M2 38409277
    809595 8rcs:32 (4.46) BS01 rna ? GO:0000027 ... P0AG51 38409277
    809596 8rcs:4 (4.46) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    809597 8rcs:4 (4.46) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    809598 8rcs:62 (4.46) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    809599 8rcs:B (4.46) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    809600 8rcs:B (4.46) BS02 rna ? GO:0000028 ... P0A7V0 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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