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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809001 8r3v:I1 (3.28) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    809002 8r3v:I2 (3.28) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    809003 8r3v:I2 (3.28) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    809004 8r3v:J1 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    809005 8r3v:J2 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    809006 8r3v:K1 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    809007 8r3v:K2 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    809008 8r3v:L1 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    809009 8r3v:L2 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    809010 8r3v:M1 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    809011 8r3v:M2 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    809012 8r3v:M2 (3.28) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    809013 8r3v:N1 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    809014 8r3v:N2 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    809015 8r3v:O1 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    809016 8r3v:O2 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    809017 8r3v:O2 (3.28) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    809018 8r3v:P1 (3.28) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    809019 8r3v:Q1 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    809020 8r3v:Q2 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    809021 8r3v:R1 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    809022 8r3v:R2 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    809023 8r3v:S1 (3.28) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    809024 8r3v:S2 (3.28) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    809025 8r3v:T1 (3.28) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    809026 8r3v:U1 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    809027 8r3v:U1 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    809028 8r3v:U2 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    809029 8r3v:U2 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    809030 8r3v:a2 (3.28) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    809031 8r3v:b2 (3.28) BS01 rna ? GO:0000027 ... P60422 38409277
    809032 8r3v:b2 (3.28) BS02 rna ? GO:0000027 ... P60422 38409277
    809033 8r3v:e2 (3.28) BS01 rna ? GO:0000027 ... P62399 38409277
    809034 8r3v:e2 (3.28) BS02 rna ? GO:0000027 ... P62399 38409277
    809035 8r3v:e2 (3.28) BS03 rna ? GO:0000027 ... P62399 38409277
    809036 8r3v:g2 (3.28) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    809037 8r3v:h2 (3.28) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    809038 8r3v:h2 (3.28) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    809039 8r3v:i2 (3.28) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    809040 8r3v:i2 (3.28) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    809041 8r3v:l2 (3.28) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    809042 8r3v:o2 (3.28) BS01 rna ? GO:0002181 ... P02413 38409277
    809043 8r3v:r2 (3.28) BS01 rna ? GO:0002181 ... P0C018 38409277
    809044 8r3v:r2 (3.28) BS02 rna ? GO:0002181 ... P0C018 38409277
    809045 8r3v:z2 (3.28) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    809046 8r3v:z2 (3.28) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    809047 8r41:A (2.25) BS01 XUF ? GO:0005975 ... P36222 38427954
    809048 8r41:B (2.25) BS01 XUF ? GO:0005975 ... P36222 38427954
    809049 8r42:A (2.32) BS01 XUC ? GO:0005975 ... P36222 38427954
    809050 8r42:B (2.32) BS01 SO4 ? GO:0005975 ... P36222 38427954
    809051 8r42:B (2.32) BS02 XUC ? GO:0005975 ... P36222 38427954
    809052 8r43:A (0.87) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    809053 8r43:A (0.87) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    809054 8r43:A (0.87) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    809055 8r4b:A (3.88) BS01 GSP ? GO:0000166 ... Q8KC98 38666771
    809056 8r4d:A (3.88) BS01 GSP ? GO:0000166 ... Q8KC98 38666771
    809057 8r4o:A (2.725) BS01 XVI 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809058 8r4o:C (2.725) BS01 XVI 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809059 8r4o:E (2.725) BS01 XVI 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809060 8r4o:G (2.725) BS01 XVI 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809061 8r4o:I (2.725) BS01 XVI 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809062 8r4o:K (2.725) BS01 XVI 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809063 8r4q:A (2.838) BS01 DB8 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809064 8r4q:C (2.838) BS01 DB8 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809065 8r4q:E (2.838) BS01 DB8 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809066 8r4q:G (2.838) BS01 DB8 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809067 8r4q:I (2.838) BS01 DB8 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809068 8r4q:K (2.838) BS01 DB8 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809069 8r4u:A (2.416) BS01 XW3 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809070 8r4u:C (2.416) BS01 XW3 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809071 8r4u:E (2.416) BS01 XW3 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809072 8r4u:G (2.416) BS01 XW3 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809073 8r4v:A (1.9) BS01 XWA 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809074 8r4v:B (1.9) BS01 XWA 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809075 8r4v:C (1.9) BS01 XWA 2.7.11.1 GO:0004672 ... Q9Y2K2 38508313
    809076 8r4x:A (1.54) BS01 XZ0 ? GO:0005975 ... P36222 38427954
    809077 8r4x:B (1.54) BS01 XZ0 ? GO:0005975 ... P36222 38427954
    809078 8r4x:C (1.54) BS01 XZ0 ? GO:0005975 ... P36222 38427954
    809079 8r4x:D (1.54) BS01 XZ0 ? GO:0005975 ... P36222 38427954
    809080 8r55:0 (3.57) BS01 rna ? GO:0003735 ... A0A3A5I502 38177497
    809081 8r55:1 (3.57) BS01 rna ? GO:0003735 ... A0A3A5I267 38177497
    809082 8r55:2 (3.57) BS01 rna ? GO:0003735 ... A0A063XCT1 38177497
    809083 8r55:3 (3.57) BS01 rna ? GO:0003735 ... A0A063XFQ7 38177497
    809084 8r55:4 (3.57) BS01 rna ? GO:0003735 ... A0A199WAC7 38177497
    809085 8r55:6 (3.57) BS01 rna ? GO:0003735 ... A0A063XD11 38177497
    809086 8r55:B (3.57) BS01 rna ? GO:0003735 ... A0A063XFB4 38177497
    809087 8r55:C (3.57) BS01 rna ? GO:0003676 ... A0A3N6BZP3 38177497
    809088 8r55:C (3.57) BS02 rna ? GO:0003676 ... A0A3N6BZP3 38177497
    809089 8r55:D (3.57) BS01 rna ? GO:0003723 ... A0A063XDX5 38177497
    809090 8r55:E (3.57) BS01 rna ? GO:0003723 ... A0A1A0G5K9 38177497
    809091 8r55:E (3.57) BS02 rna ? GO:0003723 ... A0A1A0G5K9 38177497
    809092 8r55:F (3.57) BS01 rna ? GO:0003735 ... A0A063XCU1 38177497
    809093 8r55:G (3.57) BS01 rna ? GO:0000028 ... A0A063X741 38177497
    809094 8r55:H (3.57) BS01 rna ? GO:0003735 ... A0A063XCN0 38177497
    809095 8r55:I (3.57) BS01 rna ? GO:0003723 ... A0A063XCS1 38177497
    809096 8r55:J (3.57) BS01 rna ? GO:0000049 ... F5HRV5 38177497
    809097 8r55:K (3.57) BS01 rna ? GO:0003735 ... A0A7U5HS75 38177497
    809098 8r55:L (3.57) BS01 rna ? GO:0000049 ... A0A063XCJ2 38177497
    809099 8r55:M (3.57) BS01 rna ? GO:0000049 ... A0A063X7B3 38177497
    809100 8r55:M (3.57) BS02 rna ? GO:0000049 ... A0A063X7B3 38177497
    809101 8r55:N (3.57) BS01 rna ? GO:0003735 ... F5HRV2 38177497
    809102 8r55:O (3.57) BS01 rna ? GO:0003735 ... A0A2J0WEG5 38177497
    809103 8r55:P (3.57) BS01 rna ? GO:0003735 ... A0A063XHU4 38177497
    809104 8r55:Q (3.57) BS01 rna ? GO:0003735 ... A0A063XCK9 38177497
    809105 8r55:R (3.57) BS01 rna ? GO:0003735 ... A0A3A5I3T1 38177497
    809106 8r55:S (3.57) BS01 rna ? GO:0000028 ... F5HRU0 38177497
    809107 8r55:T (3.57) BS01 rna ? GO:0003723 ... A0A086DNG8 38177497
    809108 8r55:Z (3.57) BS01 rna ? GO:0002181 ... A0A063XCB6 38177497
    809109 8r55:a (3.57) BS01 rna ? GO:0003735 ... A0A063X745 38177497
    809110 8r55:b (3.57) BS01 rna ? GO:0003735 ... A0A063X8U6 38177497
    809111 8r55:c (3.57) BS01 rna ? GO:0000049 ... A0A063XB64 38177497
    809112 8r55:c (3.57) BS02 rna ? GO:0000049 ... A0A063XB64 38177497
    809113 8r55:c (3.57) BS03 rna ? GO:0000049 ... A0A063XB64 38177497
    809114 8r55:e (3.57) BS01 rna ? GO:0003729 ... A0A063XCH0 38177497
    809115 8r55:f (3.57) BS01 rna ? GO:0003735 ... A0A063X754 38177497
    809116 8r55:f (3.57) BS02 rna ? GO:0003735 ... A0A063X754 38177497
    809117 8r55:i (3.57) BS01 rna ? GO:0003735 ... A0A063XCP1 38177497
    809118 8r55:j (3.57) BS01 rna ? GO:0000049 ... A0A063XB41 38177497
    809119 8r55:j (3.57) BS02 rna ? GO:0000049 ... A0A063XB41 38177497
    809120 8r55:k (3.57) BS01 rna ? GO:0003735 ... A0A063XCG5 38177497
    809121 8r55:l (3.57) BS01 rna ? GO:0003735 ... F5HRS9 38177497
    809122 8r55:l (3.57) BS02 rna ? GO:0003735 ... F5HRS9 38177497
    809123 8r55:m (3.57) BS01 rna ? GO:0003735 ... A0A063XHU6 38177497
    809124 8r55:m (3.57) BS02 rna ? GO:0003735 ... A0A063XHU6 38177497
    809125 8r55:n (3.57) BS01 rna ? GO:0000027 ... A0A063XFC1 38177497
    809126 8r55:o (3.57) BS01 rna ? GO:0003723 ... A0A063XIS2 38177497
    809127 8r55:r (3.57) BS01 rna ? GO:0003735 ... F5HRT3 38177497
    809128 8r55:s (3.57) BS01 rna ? GO:0000027 ... A0A063XB36 38177497
    809129 8r55:t (3.57) BS01 rna ? GO:0003723 ... F5HRS7 38177497
    809130 8r55:u (3.57) BS01 rna ? GO:0003735 ... A0A063XF22 38177497
    809131 8r55:u (3.57) BS02 rna ? GO:0003735 ... A0A063XF22 38177497
    809132 8r55:v (3.57) BS01 rna ? GO:0003735 ... A0A063XHT6 38177497
    809133 8r55:w (3.57) BS01 rna ? GO:0003735 ... F5HRV8 38177497
    809134 8r55:x (3.57) BS01 rna ? GO:0003735 ... F5HRU6 38177497
    809135 8r56:A (2.45) BS01 Y2W 3.2.1.- GO:0003824 ... D5E1T0 38647177
    809136 8r56:B (2.45) BS01 Y2W 3.2.1.- GO:0003824 ... D5E1T0 38647177
    809137 8r56:C (2.45) BS01 Y2W 3.2.1.- GO:0003824 ... D5E1T0 38647177
    809138 8r56:D (2.45) BS01 Y2W 3.2.1.- GO:0003824 ... D5E1T0 38647177
    809139 8r57:F (2.55) BS01 rna ? GO:0003723 ... W5I1R7 38139282
    809140 8r57:K (2.55) BS01 rna ? GO:0003723 ... W5AUH7 38139282
    809141 8r57:M (2.55) BS01 rna ? GO:0003735 ... W5FEZ3 38139282
    809142 8r57:P (2.55) BS01 rna ? GO:0000028 ... W5D067 38139282
    809143 8r57:P (2.55) BS02 MG ? GO:0000028 ... W5D067 38139282
    809144 8r57:Q (2.55) BS01 rna ? GO:0000462 ... W5DS33 38139282
    809145 8r57:R (2.55) BS01 rna ? GO:0000028 ... A0A3B6LV48 38139282
    809146 8r57:S (2.55) BS01 rna ? GO:0003676 ... Q8L806 38139282
    809147 8r57:T (2.55) BS01 rna ? GO:0003735 ... W5FWF5 38139282
    809148 8r57:U (2.55) BS01 rna ? GO:0003735 ... U5HTD8 38139282
    809149 8r57:Z (2.55) BS01 rna ? GO:0003735 ... W5EP45 38139282
    809150 8r57:c (2.55) BS01 rna ? GO:0000028 ... W5E8X2 38139282
    809151 8r57:d (2.55) BS01 rna ? GO:0002181 ... Q5I7K3 38139282
    809152 8r57:d (2.55) BS02 ZN ? GO:0002181 ... Q5I7K3 38139282
    809153 8r57:f (2.55) BS01 rna ? GO:0003729 ... W5A9E1 38139282
    809154 8r57:f (2.55) BS02 ZN ? GO:0003729 ... W5A9E1 38139282
    809155 8r57:g (2.55) BS01 rna ? GO:0005080 ... W5D4F5 38139282
    809156 8r57:h (2.55) BS01 rna ? GO:0003735 ... A0A3B5XY60 38139282
    809157 8r5b:A (1.6) BS01 Y32 2.3.2.27 N/A Q9C029 N/A
    809158 8r5b:B (1.6) BS01 Y32 2.3.2.27 N/A Q9C029 N/A
    809159 8r5c:A (1.6) BS01 Y3C 2.3.2.27 N/A Q9C029 38934237
    809160 8r5h:C (3.44) BS01 SY8 2.3.2.23 N/A Q712K3 38382526
    809161 8r5h:F (3.44) BS01 759 ? N/A O60885 38382526
    809162 8r5h:H (3.44) BS01 759 ? N/A P40337 38382526
    809163 8r5h:R (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    809164 8r5h:R (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    809165 8r5h:R (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    809166 8r5k:A (0.89) BS01 Y6Z 5.2.1.8 GO:0003755 ... Q13451 38582133
    809167 8r5o:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    809168 8r5q:A (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809169 8r5q:A (2.62) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809170 8r5q:A (2.62) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809171 8r5q:B (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809172 8r5q:B (2.62) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809173 8r5q:B (2.62) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809174 8r5q:C (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809175 8r5q:C (2.62) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809176 8r5q:C (2.62) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809177 8r5q:D (2.62) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809178 8r5q:D (2.62) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809179 8r5q:D (2.62) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809180 8r5r:A (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809181 8r5r:A (3.078) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809182 8r5r:A (3.078) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809183 8r5r:B (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809184 8r5r:B (3.078) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809185 8r5r:B (3.078) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809186 8r5r:C (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809187 8r5r:C (3.078) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809188 8r5r:C (3.078) BS03 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809189 8r5r:D (3.078) BS01 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809190 8r5r:D (3.078) BS02 Y5N 1.13.11.11 GO:0004833 ... P48775 N/A
    809191 8r5r:D (3.078) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    809192 8r5t:A (1.58) BS01 Y4E 3.5.2.6 GO:0008270 ... C7C422 38373290
    809193 8r5t:A (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    809194 8r5t:A (1.58) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    809195 8r5t:B (1.58) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    809196 8r5t:B (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    809197 8r5u:A (1.56) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    809198 8r5u:A (1.56) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    809199 8r5u:A (1.56) BS03 Y4E 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    809200 8r5u:B (1.56) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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