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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    808401 8qyf:I (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    808402 8qyf:J (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    808403 8qyf:K (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    808404 8qyf:L (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    808405 8qyf:M (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    808406 8qyf:N (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    808407 8qyg:A (1.15) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    808408 8qyg:A (1.15) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    808409 8qyg:B (1.15) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    808410 8qyg:B (1.15) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    808411 8qyg:B (1.15) BS03 MG ? GO:0000166 ... A0A6H0WK49 38946302
    808412 8qyp:A (2.759) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    808413 8qyp:A (2.759) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    808414 8qyq:A (2.61) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    808415 8qyq:A (2.61) BS02 BEF ? GO:0003774 ... Q9BE39 38014327
    808416 8qyq:A (2.61) BS03 MG ? GO:0003774 ... Q9BE39 38014327
    808417 8qyq:A (2.61) BS04 XB2 ? GO:0003774 ... Q9BE39 38014327
    808418 8qyq:B (2.61) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    808419 8qyq:B (2.61) BS02 BEF ? GO:0003774 ... Q9BE39 38014327
    808420 8qyq:B (2.61) BS03 XB2 ? GO:0003774 ... Q9BE39 38014327
    808421 8qyq:B (2.61) BS04 MG ? GO:0003774 ... Q9BE39 38014327
    808422 8qyr:B (1.8) BS01 XB2 ? GO:0003774 ... Q9BE39 38014327
    808423 8qyr:B (1.8) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    808424 8qyr:B (1.8) BS03 ADP ? GO:0003774 ... Q9BE39 38014327
    808425 8qyr:B (1.8) BS04 BEF ? GO:0003774 ... Q9BE39 38014327
    808426 8qyt:A (1.69) BS01 FMN 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    808427 8qyt:A (1.69) BS02 PLP 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    808428 8qyu:A (1.96) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    808429 8qyu:A (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    808430 8qyu:A (1.96) BS03 2OW ? GO:0003774 ... Q9BE39 38014327
    808431 8qyu:B (1.96) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    808432 8qyu:B (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    808433 8qyu:B (1.96) BS03 2OW ? GO:0003774 ... Q9BE39 38014327
    808434 8qyw:A (2.746) BS01 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    808435 8qyw:A (2.746) BS02 FMN 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    808436 8qyw:A (2.746) BS03 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    808437 8qz1:A (3.588) BS01 K ? N/A P57789 38755204
    808438 8qz1:A (3.588) BS02 K ? N/A P57789 38755204
    808439 8qz1:A (3.588) BS03 K ? N/A P57789 38755204
    808440 8qz1:B (3.588) BS01 K ? N/A P57789 38755204
    808441 8qz1:B (3.588) BS02 K ? N/A P57789 38755204
    808442 8qz1:B (3.588) BS03 K ? N/A P57789 38755204
    808443 8qz2:A (3.5) BS01 K ? N/A P57789 38755204
    808444 8qz2:A (3.5) BS02 K ? N/A P57789 38755204
    808445 8qz2:A (3.5) BS03 K ? N/A P57789 38755204
    808446 8qz2:A (3.5) BS04 K ? N/A P57789 38755204
    808447 8qz2:B (3.5) BS01 K ? N/A P57789 38755204
    808448 8qz2:B (3.5) BS02 K ? N/A P57789 38755204
    808449 8qz2:B (3.5) BS03 K ? N/A P57789 38755204
    808450 8qz2:B (3.5) BS04 K ? N/A P57789 38755204
    808451 8qz3:A (2.4) BS01 K ? N/A P57789 38755204
    808452 8qz3:A (2.4) BS02 K ? N/A P57789 38755204
    808453 8qz3:A (2.4) BS03 K ? N/A P57789 38755204
    808454 8qz3:A (2.4) BS04 K ? N/A P57789 38755204
    808455 8qz3:A (2.4) BS05 K ? N/A P57789 38755204
    808456 8qz3:B (2.4) BS01 K ? N/A P57789 38755204
    808457 8qz3:B (2.4) BS02 K ? N/A P57789 38755204
    808458 8qz3:B (2.4) BS03 K ? N/A P57789 38755204
    808459 8qz3:B (2.4) BS04 K ? N/A P57789 38755204
    808460 8qz4:A (3.2) BS01 Y01 ? N/A P57789 38755204
    808461 8qz4:A (3.2) BS02 Y01 ? N/A P57789 38755204
    808462 8qz4:A (3.2) BS03 Y01 ? N/A P57789 38755204
    808463 8qz4:B (3.2) BS01 Y01 ? N/A P57789 38755204
    808464 8qz4:B (3.2) BS02 Y01 ? N/A P57789 38755204
    808465 8qz4:B (3.2) BS03 Y01 ? N/A P57789 38755204
    808466 8qz8:A (3.13) BS01 rna ? N/A A0A142I7Z3 38066000
    808467 8qz8:A (3.13) BS02 ZN ? N/A A0A142I7Z3 38066000
    808468 8qz8:B (3.13) BS01 rna ? GO:0001172 ... A0A1Y9SHW4 38066000
    808469 8qz8:B (3.13) BS02 rna ? GO:0001172 ... A0A1Y9SHW4 38066000
    808470 8qz8:B (3.13) BS03 G2P ? GO:0001172 ... A0A1Y9SHW4 38066000
    808471 8qz8:B (3.13) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    808472 8qz8:C (3.13) BS01 rna ? N/A A0A7G3S745 38066000
    808473 8qz8:C (3.13) BS02 ZN ? N/A A0A7G3S745 38066000
    808474 8qzc:A (3.29) BS01 CA ? GO:0005229 ... Q8BHY3 37984335
    808475 8qzc:A (3.29) BS02 CA ? GO:0005229 ... Q8BHY3 37984335
    808476 8qzc:B (3.29) BS01 CA ? GO:0005229 ... Q8BHY3 37984335
    808477 8qzc:B (3.29) BS02 CA ? GO:0005229 ... Q8BHY3 37984335
    808478 8qzd:A (1.3) BS01 XDZ 3.1.3.76
    3.3.2.10    		 GO:0003824 ... P34913 38470246
    808479 8qze:A (1.87) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    808480 8qze:B (1.87) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    808481 8qzf:A (1.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    808482 8qzf:B (1.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    808483 8qzs:21 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    808484 8qzs:22 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    808485 8qzs:23 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    808486 8qzs:2B (4.1) BS01 rna ? GO:0000398 ... P08579 38778104
    808487 8qzs:2b (4.1) BS01 rna ? GO:0000387 ... P14678 38778104
    808488 8qzs:2e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    808489 8qzs:2f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808490 8qzs:2g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808491 8qzs:42 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    808492 8qzs:43 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    808493 8qzs:4e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    808494 8qzs:4f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808495 8qzs:4g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808496 8qzs:51 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    808497 8qzs:52 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    808498 8qzs:53 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    808499 8qzs:5b (4.1) BS01 rna ? GO:0000387 ... P14678 38778104
    808500 8qzs:5e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    808501 8qzs:5f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808502 8qzs:5g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808503 8qzs:7 (4.1) BS01 rna ? GO:0000389 ... Q15459 38778104
    808504 8qzs:A (4.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    808505 8qzs:A (4.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    808506 8qzs:A (4.1) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    808507 8qzs:B (4.1) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38778104
    808508 8qzs:B1 (4.1) BS01 rna ? GO:0000245 ... O75533 38778104
    808509 8qzs:B1 (4.1) BS02 rna ? GO:0000245 ... O75533 38778104
    808510 8qzs:B6 (4.1) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    808511 8qzs:D (4.1) BS01 rna ? GO:0000245 ... P83876 38778104
    808512 8qzs:D (4.1) BS02 rna ? GO:0000245 ... P83876 38778104
    808513 8qzs:F (4.1) BS01 rna ? GO:0000375 ... O43172 38778104
    808514 8qzs:J (4.1) BS01 rna ? GO:0000244 ... O43395 38778104
    808515 8qzs:J (4.1) BS02 rna ? GO:0000244 ... O43395 38778104
    808516 8qzs:L (4.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    808517 8qzs:L (4.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    808518 8qzs:M (4.1) BS01 rna ? GO:0000398 ... P55769 38778104
    808519 8qzs:N (4.1) BS01 rna ? GO:0000244 ... O94906 38778104
    808520 8qzs:X (4.1) BS01 rna ? GO:0000398 ... O75554 38778104
    808521 8qzs:X (4.1) BS02 rna ? GO:0000398 ... O75554 38778104
    808522 8qzs:r (4.1) BS01 rna ? GO:0000398 ... Q96NC0 38778104
    808523 8qzz:A (3.35) BS01 peptide 3.6.5.3 GO:0000049 ... P41091 38547060
    808524 8qzz:A (3.35) BS02 GNP 3.6.5.3 GO:0000049 ... P41091 38547060
    808525 8r02:B (2.5) BS01 XFZ ? GO:0005515 ... Q9UBQ0 38487369
    808526 8r02:D (2.5) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    808527 8r03:A (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808528 8r03:B (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808529 8r03:C (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808530 8r03:D (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808531 8r03:E (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808532 8r03:F (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808533 8r03:G (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808534 8r03:H (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808535 8r03:I (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808536 8r03:J (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808537 8r03:K (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808538 8r03:L (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808539 8r03:M (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808540 8r03:N (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    808541 8r04:A (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808542 8r04:B (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808543 8r04:C (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808544 8r04:D (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808545 8r04:E (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808546 8r04:F (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808547 8r04:G (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808548 8r04:H (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808549 8r04:I (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808550 8r04:J (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808551 8r04:K (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808552 8r04:L (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808553 8r04:M (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808554 8r04:N (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    808555 8r05:A (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808556 8r05:B (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808557 8r05:C (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808558 8r05:D (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808559 8r05:E (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808560 8r05:F (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808561 8r05:G (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808562 8r05:H (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808563 8r05:I (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808564 8r05:J (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808565 8r05:K (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808566 8r05:L (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808567 8r05:M (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808568 8r05:N (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    808569 8r06:A (1.7) BS01 PO8 3.2.1.45 GO:0004348 ... F6BL85 28937220
    808570 8r06:A (1.7) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 28937220
    808571 8r08:11 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    808572 8r08:12 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    808573 8r08:13 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    808574 8r08:1K (6.1) BS01 rna ? GO:0000398 ... P08621 38778104
    808575 8r08:1b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    808576 8r08:1e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    808577 8r08:1f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808578 8r08:1g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808579 8r08:21 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    808580 8r08:22 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    808581 8r08:23 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    808582 8r08:2B (6.1) BS01 rna ? GO:0000398 ... P08579 38778104
    808583 8r08:2e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    808584 8r08:2f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808585 8r08:2g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808586 8r08:41 (6.1) BS01 peptide ? GO:0000243 ... P62314 38778104
    808587 8r08:41 (6.1) BS02 rna ? GO:0000243 ... P62314 38778104
    808588 8r08:42 (6.1) BS01 peptide ? GO:0000245 ... P62316 38778104
    808589 8r08:42 (6.1) BS02 rna ? GO:0000245 ... P62316 38778104
    808590 8r08:43 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    808591 8r08:4b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    808592 8r08:4e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    808593 8r08:4f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808594 8r08:4g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808595 8r08:51 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    808596 8r08:52 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    808597 8r08:5b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    808598 8r08:5f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    808599 8r08:5g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    808600 8r08:63 (6.1) BS01 rna ? GO:0000398 ... P62310 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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