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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    806001 8q49:R (2.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    806002 8q49:U (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    806003 8q49:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    806004 8q49:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    806005 8q4a:B (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    806006 8q4a:B (2.6) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    806007 8q4a:D (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    806008 8q4a:E (2.6) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    806009 8q4a:F (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    806010 8q4a:F (2.6) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    806011 8q4a:G (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    806012 8q4a:G (2.6) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    806013 8q4a:G (2.6) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    806014 8q4a:H (2.6) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    806015 8q4a:I (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    806016 8q4a:I (2.6) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    806017 8q4a:M (2.6) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    806018 8q4a:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    806019 8q4a:P (2.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    806020 8q4a:R (2.6) BS01 ZN ? GO:0005739 ... P23934 38870289
    806021 8q4a:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    806022 8q4a:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    806023 8q4h:A (2.83) BS01 JYF 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806024 8q4h:A (2.83) BS02 COB 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806025 8q4h:A (2.83) BS03 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806026 8q4h:A (2.83) BS04 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806027 8q4h:A (2.83) BS05 MQ7 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806028 8q4h:B (2.83) BS01 JYF 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806029 8q4h:B (2.83) BS02 COB 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806030 8q4h:B (2.83) BS03 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806031 8q4h:B (2.83) BS04 SF4 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806032 8q4h:B (2.83) BS05 MQ7 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    806033 8q4m:A (1.43) BS01 J9B ? GO:0003723 ... Q96MU7 38787793
    806034 8q4m:B (1.43) BS01 J9B ? GO:0003723 ... Q96MU7 38787793
    806035 8q4n:A (1.42) BS01 JIR ? GO:0003723 ... Q96MU7 38787793
    806036 8q4n:B (1.42) BS01 JIR ? GO:0003723 ... Q96MU7 38787793
    806037 8q4p:A (1.43) BS01 JII ? GO:0003723 ... Q96MU7 38787793
    806038 8q4p:B (1.43) BS01 JII ? GO:0003723 ... Q96MU7 38787793
    806039 8q4q:A (1.4) BS01 JIB ? GO:0003723 ... Q96MU7 38787793
    806040 8q4q:B (1.4) BS01 JIB ? GO:0003723 ... Q96MU7 38787793
    806041 8q4r:A (1.43) BS01 JHU ? GO:0003723 ... Q96MU7 38787793
    806042 8q4r:B (1.43) BS01 JHU ? GO:0003723 ... Q96MU7 38787793
    806043 8q4t:A (1.51) BS01 JBD ? GO:0003723 ... Q96MU7 38787793
    806044 8q4t:B (1.51) BS01 JBD ? GO:0003723 ... Q96MU7 38787793
    806045 8q4u:A (1.37) BS01 JA0 ? GO:0003723 ... Q96MU7 38787793
    806046 8q4u:B (1.37) BS01 JA0 ? GO:0003723 ... Q96MU7 38787793
    806047 8q4v:A (1.36) BS01 JO0 ? GO:0003723 ... Q96MU7 38787793
    806048 8q4v:B (1.36) BS01 JO0 ? GO:0003723 ... Q96MU7 38787793
    806049 8q4w:A (1.61) BS01 JNC ? GO:0003723 ... Q96MU7 38787793
    806050 8q4w:B (1.61) BS01 JNC ? GO:0003723 ... Q96MU7 38787793
    806051 8q50:A (1.91) BS01 FES 1.18.6.1 GO:0005524 ... P25767 38696373
    806052 8q57:A (1.7) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806053 8q57:A (1.7) BS02 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806054 8q57:B (1.7) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806055 8q57:B (1.7) BS02 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806056 8q58:A (1.7) BS01 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    806057 8q58:A (1.7) BS02 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    806058 8q59:A (2.0) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806059 8q59:A (2.0) BS02 JP9 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806060 8q59:B (2.0) BS01 ZN 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806061 8q59:B (2.0) BS02 JP9 4.1.2.40 GO:0005975 ... A0A0T9TPS2 37838169
    806062 8q5a:A (2.8) BS01 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    806063 8q5a:A (2.8) BS02 ZN ? GO:0005975 ... A0A2A2MA06 37838169
    806064 8q5e:A (2.4) BS01 FMN ? GO:0000166 ... Q88E39 38048072
    806065 8q5e:B (2.4) BS01 FMN ? GO:0000166 ... Q88E39 38048072
    806066 8q5g:A (2.0) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    806067 8q5g:A (2.0) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    806068 8q5g:B (2.0) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    806069 8q5g:B (2.0) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38048072
    806070 8q5i:0 (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZJ3 N/A
    806071 8q5i:0 (2.45) BS02 rna ? GO:0003735 ... A0A8H6BZJ3 N/A
    806072 8q5i:2 (2.45) BS01 rna ? GO:0003735 ... A0A8H6F1C8 N/A
    806073 8q5i:2 (2.45) BS02 rna ? GO:0003735 ... A0A8H6F1C8 N/A
    806074 8q5i:5 (2.45) BS01 rna ? GO:0002181 ... A0A1D8PM41 N/A
    806075 8q5i:6 (2.45) BS01 rna ? GO:0003735 ... A0A8H6C444 N/A
    806076 8q5i:7 (2.45) BS01 rna ? GO:0002181 ... A0A8H6C4U1 N/A
    806077 8q5i:8 (2.45) BS01 rna ? GO:0000027 ... A0A8H6F6A1 N/A
    806078 8q5i:8 (2.45) BS02 rna ? GO:0000027 ... A0A8H6F6A1 N/A
    806079 8q5i:9 (2.45) BS01 rna ? GO:0002181 ... A0A8H6F3X2 N/A
    806080 8q5i:9 (2.45) BS02 rna ? GO:0002181 ... A0A8H6F3X2 N/A
    806081 8q5i:AA (2.45) BS01 rna ? GO:0003735 ... Q9P843 N/A
    806082 8q5i:AB (2.45) BS01 rna ? GO:0003735 ... A0A8H6BVY8 N/A
    806083 8q5i:AC (2.45) BS01 rna ? GO:0002181 ... A0A8H6F0G8 N/A
    806084 8q5i:AD (2.45) BS01 rna ? GO:0003723 ... A0A1D8PM75 N/A
    806085 8q5i:AE (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1M1 N/A
    806086 8q5i:AF (2.45) BS01 rna ? GO:0003735 ... O94008 N/A
    806087 8q5i:AG (2.45) BS01 rna ? GO:0002181 ... A0A8H6BW57 N/A
    806088 8q5i:AH (2.45) BS01 rna ? GO:0003735 ... A0A8H6F171 N/A
    806089 8q5i:AH (2.45) BS02 MG ? GO:0003735 ... A0A8H6F171 N/A
    806090 8q5i:AI (2.45) BS01 rna ? GO:0000463 ... A0A8H6F6B7 N/A
    806091 8q5i:AI (2.45) BS02 rna ? GO:0000463 ... A0A8H6F6B7 N/A
    806092 8q5i:AJ (2.45) BS01 rna ? GO:0002181 ... P47834 N/A
    806093 8q5i:AK (2.45) BS01 rna ? GO:0003723 ... A0A1D8PF45 N/A
    806094 8q5i:AK (2.45) BS02 rna ? GO:0003723 ... A0A1D8PF45 N/A
    806095 8q5i:AK (2.45) BS03 K16 ? GO:0003723 ... A0A1D8PF45 N/A
    806096 8q5i:AK (2.45) BS04 ZN ? GO:0003723 ... A0A1D8PF45 N/A
    806097 8q5i:AL (2.45) BS01 rna ? GO:0003735 ... A0A1D8PG16 N/A
    806098 8q5i:AM (2.45) BS01 rna ? GO:0003735 ... Q96W55 N/A
    806099 8q5i:AM (2.45) BS02 rna ? GO:0003735 ... Q96W55 N/A
    806100 8q5i:AN (2.45) BS01 rna ? GO:0003735 ... A0A1D8PL68 N/A
    806101 8q5i:AN (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PL68 N/A
    806102 8q5i:AP (2.45) BS01 rna ? GO:0003735 ... A0A8H6BR69 N/A
    806103 8q5i:AP (2.45) BS02 rna ? GO:0003735 ... A0A8H6BR69 N/A
    806104 8q5i:AP (2.45) BS03 ZN ? GO:0003735 ... A0A8H6BR69 N/A
    806105 8q5i:AP (2.45) BS04 MG ? GO:0003735 ... A0A8H6BR69 N/A
    806106 8q5i:AQ (2.45) BS01 rna ? GO:0003735 ... A0A1D8PP14 N/A
    806107 8q5i:AQ (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    806108 8q5i:B (2.45) BS01 rna ? GO:0000028 ... A0A8H6C395 N/A
    806109 8q5i:C (2.45) BS01 rna ? GO:0003735 ... A0A8H6C387 N/A
    806110 8q5i:C (2.45) BS02 rna ? GO:0003735 ... A0A8H6C387 N/A
    806111 8q5i:D (2.45) BS01 rna ? GO:0003723 ... A0A8H6BZ90 N/A
    806112 8q5i:E (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYS1 N/A
    806113 8q5i:F (2.45) BS01 rna ? GO:0003723 ... A0A1D8PCI6 N/A
    806114 8q5i:G (2.45) BS01 rna ? GO:0000028 ... A0A8H6BS29 N/A
    806115 8q5i:H (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZ37 N/A
    806116 8q5i:I (2.45) BS01 rna ? GO:0003735 ... A0A8H6C655 N/A
    806117 8q5i:J (2.45) BS01 rna ? GO:0000462 ... A0A8H6F0S0 N/A
    806118 8q5i:J (2.45) BS02 rna ? GO:0000462 ... A0A8H6F0S0 N/A
    806119 8q5i:K (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1X2 N/A
    806120 8q5i:L (2.45) BS01 rna ? GO:0003723 ... A0A8H6BWQ8 N/A
    806121 8q5i:M (2.45) BS01 rna ? GO:0003735 ... A0A1D8PN83 N/A
    806122 8q5i:M (2.45) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    806123 8q5i:O (2.45) BS01 rna ? GO:0003735 ... A0A8H6F4G0 N/A
    806124 8q5i:P (2.45) BS01 rna ? GO:0000028 ... A0A8H6F0V4 N/A
    806125 8q5i:Q (2.45) BS01 rna ? GO:0000028 ... A0A1D8PK22 N/A
    806126 8q5i:R (2.45) BS01 rna ? GO:0000462 ... O94017 N/A
    806127 8q5i:S (2.45) BS01 rna ? GO:0003735 ... A0A8H6BTR7 N/A
    806128 8q5i:T (2.45) BS01 rna ? GO:0003676 ... A0A8H6F3Y8 N/A
    806129 8q5i:U (2.45) BS01 rna ? GO:0000028 ... A0A8H6C5L4 N/A
    806130 8q5i:V (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYJ9 N/A
    806131 8q5i:W (2.45) BS01 rna ? GO:0000447 ... Q9P844 N/A
    806132 8q5i:X (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0N4 N/A
    806133 8q5i:X (2.45) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    806134 8q5i:Y (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0V0 N/A
    806135 8q5i:Z (2.45) BS01 rna ? GO:0003735 ... A0A8H6C3K1 N/A
    806136 8q5i:b (2.45) BS01 rna ? GO:0003729 ... A0A8H6BTS1 N/A
    806137 8q5i:c (2.45) BS01 rna ? GO:0000028 ... A0A8H6BWE6 N/A
    806138 8q5i:d (2.45) BS01 rna ? GO:0000028 ... A0A8H6C0A5 N/A
    806139 8q5i:e (2.45) BS01 rna ? GO:0002181 ... A0A1D8PTR4 N/A
    806140 8q5i:e (2.45) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    806141 8q5i:f (2.45) BS01 rna ? GO:0003735 ... A0A1D8PSK2 N/A
    806142 8q5i:j (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    806143 8q5i:j (2.45) BS02 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    806144 8q5i:j (2.45) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    806145 8q5i:k (2.45) BS01 rna ? GO:0000027 ... Q59LS1 N/A
    806146 8q5i:l (2.45) BS01 rna ? GO:0003723 ... A0A8H6F4H4 N/A
    806147 8q5i:l (2.45) BS02 rna ? GO:0003723 ... A0A8H6F4H4 N/A
    806148 8q5i:m (2.45) BS01 rna ? GO:0000027 ... Q5AGZ7 N/A
    806149 8q5i:m (2.45) BS02 rna ? GO:0000027 ... Q5AGZ7 N/A
    806150 8q5i:n (2.45) BS01 rna ? GO:0000027 ... Q9P834 N/A
    806151 8q5i:o (2.45) BS01 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    806152 8q5i:o (2.45) BS02 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    806153 8q5i:p (2.45) BS01 rna ? GO:0000470 ... A0A8H6C337 N/A
    806154 8q5i:p (2.45) BS02 rna ? GO:0000470 ... A0A8H6C337 N/A
    806155 8q5i:q (2.45) BS01 rna ? GO:0002181 ... A0A8H6C3N3 N/A
    806156 8q5i:r (2.45) BS01 rna ? GO:0000027 ... Q5AIB8 N/A
    806157 8q5i:r (2.45) BS02 rna ? GO:0000027 ... Q5AIB8 N/A
    806158 8q5i:s (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1S5 N/A
    806159 8q5i:s (2.45) BS02 rna ? GO:0003723 ... A0A8H6F1S5 N/A
    806160 8q5i:t (2.45) BS01 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    806161 8q5i:t (2.45) BS02 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    806162 8q5i:u (2.45) BS01 rna ? GO:0003723 ... A0A8H6F332 N/A
    806163 8q5i:v (2.45) BS01 rna ? GO:0002181 ... Q5A6R1 N/A
    806164 8q5i:v (2.45) BS02 rna ? GO:0002181 ... Q5A6R1 N/A
    806165 8q5i:w (2.45) BS01 rna ? GO:0003729 ... A0A8H6BZ56 N/A
    806166 8q5i:x (2.45) BS01 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    806167 8q5i:x (2.45) BS02 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    806168 8q5i:x (2.45) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    806169 8q5i:y (2.45) BS01 rna ? GO:0003723 ... A0A8H6C4Y1 N/A
    806170 8q5i:z (2.45) BS01 rna ? GO:0003723 ... A0A1D8PK40 N/A
    806171 8q5i:z (2.45) BS02 rna ? GO:0003723 ... A0A1D8PK40 N/A
    806172 8q5j:A (1.48) BS01 HEM ? GO:0004497 ... A0A100JTL7 N/A
    806173 8q5k:A (2.8) BS01 JTI ? N/A Q9I4X0 38170170
    806174 8q5l:A (2.9) BS01 JVO ? N/A Q9I4X0 38170170
    806175 8q5p:A (1.814) BS01 peptide 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    806176 8q5p:A (1.814) BS02 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    806177 8q5p:A (1.814) BS03 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    806178 8q5p:A (1.814) BS04 ZN 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    806179 8q5p:A (1.814) BS05 SAM 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    806180 8q5t:A (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806181 8q5t:B (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806182 8q5t:C (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806183 8q5t:D (2.31) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806184 8q5v:A (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    806185 8q5v:A (2.74) BS02 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806186 8q5v:B (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806187 8q5v:B (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    806188 8q5v:B (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    806189 8q5v:C (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    806190 8q5v:C (2.74) BS02 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    806191 8q5v:C (2.74) BS03 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806192 8q5v:D (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806193 8q5v:D (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    806194 8q5v:E (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    806195 8q5v:E (2.74) BS02 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    806196 8q5v:E (2.74) BS03 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806197 8q5v:F (2.74) BS01 SF4 1.18.6.1 GO:0005524 ... P25767 38696373
    806198 8q5v:F (2.74) BS02 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    806199 8q5v:F (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    806200 8q5v:G (2.74) BS01 ADP 1.18.6.1 GO:0005524 ... P25767 38696373
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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