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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    805001 8pvk:LG (2.55) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    805002 8pvk:LG (2.55) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    805003 8pvk:LJ (2.55) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    805004 8pvk:LJ (2.55) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    805005 8pvk:LK (2.55) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    805006 8pvk:LL (2.55) BS01 rna ? GO:0003723 ... G0S992 37921038
    805007 8pvk:LL (2.55) BS02 rna ? GO:0003723 ... G0S992 37921038
    805008 8pvk:LM (2.55) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    805009 8pvk:LN (2.55) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    805010 8pvk:LN (2.55) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    805011 8pvk:LO (2.55) BS01 rna ? GO:0003729 ... G0SH61 37921038
    805012 8pvk:LP (2.55) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    805013 8pvk:LP (2.55) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    805014 8pvk:LQ (2.55) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    805015 8pvk:LR (2.55) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    805016 8pvk:LS (2.55) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    805017 8pvk:LT (2.55) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    805018 8pvk:LU (2.55) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    805019 8pvk:LV (2.55) BS01 rna ? GO:0003735 ... G0SI44 37921038
    805020 8pvk:LX (2.55) BS01 rna ? GO:0000027 ... G0S507 37921038
    805021 8pvk:LX (2.55) BS02 rna ? GO:0000027 ... G0S507 37921038
    805022 8pvk:LY (2.55) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    805023 8pvk:LY (2.55) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    805024 8pvk:LZ (2.55) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    805025 8pvk:Lc (2.55) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    805026 8pvk:Ld (2.55) BS01 rna ? GO:0002181 ... G0SD68 37921038
    805027 8pvk:Le (2.55) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    805028 8pvk:Lf (2.55) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    805029 8pvk:Lg (2.55) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    805030 8pvk:Lg (2.55) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    805031 8pvk:Lh (2.55) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    805032 8pvk:Lh (2.55) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    805033 8pvk:Li (2.55) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    805034 8pvk:Lj (2.55) BS01 rna ? GO:0003723 ... G0S101 37921038
    805035 8pvk:Lj (2.55) BS02 rna ? GO:0003723 ... G0S101 37921038
    805036 8pvk:Lj (2.55) BS03 ZN ? GO:0003723 ... G0S101 37921038
    805037 8pvk:Ll (2.55) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    805038 8pvk:Ll (2.55) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    805039 8pvk:Lp (2.55) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    805040 8pvk:Lp (2.55) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    805041 8pvk:Lq (2.55) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    805042 8pvk:Lr (2.55) BS01 rna ? GO:0000470 ... G0S4Z9 37921038
    805043 8pvl:CF (2.19) BS01 rna ? GO:0000027 ... G0S616 37921038
    805044 8pvl:CH (2.19) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    805045 8pvl:CH (2.19) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    805046 8pvl:CH (2.19) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    805047 8pvl:CH (2.19) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    805048 8pvl:CJ (2.19) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    805049 8pvl:CJ (2.19) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    805050 8pvl:CK (2.19) BS01 rna ? GO:0000460 ... G0S081 37921038
    805051 8pvl:CL (2.19) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    805052 8pvl:CM (2.19) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    805053 8pvl:CM (2.19) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    805054 8pvl:CN (2.19) BS01 rna ? GO:0000054 ... G0S683 37921038
    805055 8pvl:CO (2.19) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    805056 8pvl:CQ (2.19) BS01 rna ? GO:0005730 ... G0S497 37921038
    805057 8pvl:CQ (2.19) BS02 ZN ? GO:0005730 ... G0S497 37921038
    805058 8pvl:Cb (2.19) BS01 rna ? GO:0003676 ... G0SB32 37921038
    805059 8pvl:Cb (2.19) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    805060 8pvl:Cd (2.19) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    805061 8pvl:Cd (2.19) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    805062 8pvl:Cd (2.19) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    805063 8pvl:Cd (2.19) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    805064 8pvl:Ce (2.19) BS01 rna ? GO:0000027 ... G0S495 37921038
    805065 8pvl:Ce (2.19) BS02 rna ? GO:0000027 ... G0S495 37921038
    805066 8pvl:Cf (2.19) BS01 rna ? GO:0000027 ... G0SF80 37921038
    805067 8pvl:Cf (2.19) BS02 rna ? GO:0000027 ... G0SF80 37921038
    805068 8pvl:Cg (2.19) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    805069 8pvl:Cz (2.19) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    805070 8pvl:Cz (2.19) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    805071 8pvl:LA (2.19) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    805072 8pvl:LB (2.19) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    805073 8pvl:LC (2.19) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    805074 8pvl:LC (2.19) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    805075 8pvl:LD (2.19) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    805076 8pvl:LD (2.19) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    805077 8pvl:LE (2.19) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    805078 8pvl:LF (2.19) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    805079 8pvl:LG (2.19) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    805080 8pvl:LG (2.19) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    805081 8pvl:LG (2.19) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    805082 8pvl:LJ (2.19) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    805083 8pvl:LJ (2.19) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    805084 8pvl:LK (2.19) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    805085 8pvl:LL (2.19) BS01 rna ? GO:0003723 ... G0S992 37921038
    805086 8pvl:LL (2.19) BS02 rna ? GO:0003723 ... G0S992 37921038
    805087 8pvl:LM (2.19) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    805088 8pvl:LN (2.19) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    805089 8pvl:LN (2.19) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    805090 8pvl:LO (2.19) BS01 rna ? GO:0003729 ... G0SH61 37921038
    805091 8pvl:LP (2.19) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    805092 8pvl:LP (2.19) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    805093 8pvl:LQ (2.19) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    805094 8pvl:LR (2.19) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    805095 8pvl:LS (2.19) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    805096 8pvl:LT (2.19) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    805097 8pvl:LU (2.19) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    805098 8pvl:LV (2.19) BS01 rna ? GO:0003735 ... G0SI44 37921038
    805099 8pvl:LX (2.19) BS01 rna ? GO:0000027 ... G0S507 37921038
    805100 8pvl:LX (2.19) BS02 rna ? GO:0000027 ... G0S507 37921038
    805101 8pvl:LY (2.19) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    805102 8pvl:LY (2.19) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    805103 8pvl:LZ (2.19) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    805104 8pvl:Lc (2.19) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    805105 8pvl:Ld (2.19) BS01 rna ? GO:0002181 ... G0SD68 37921038
    805106 8pvl:Le (2.19) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    805107 8pvl:Lf (2.19) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    805108 8pvl:Lg (2.19) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    805109 8pvl:Lg (2.19) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    805110 8pvl:Lh (2.19) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    805111 8pvl:Lh (2.19) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    805112 8pvl:Li (2.19) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    805113 8pvl:Lj (2.19) BS01 rna ? GO:0003723 ... G0S101 37921038
    805114 8pvl:Lj (2.19) BS02 rna ? GO:0003723 ... G0S101 37921038
    805115 8pvl:Lj (2.19) BS03 ZN ? GO:0003723 ... G0S101 37921038
    805116 8pvl:Ll (2.19) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    805117 8pvl:Ll (2.19) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    805118 8pvl:Lp (2.19) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    805119 8pvl:Lp (2.19) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    805120 8pvl:Lq (2.19) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    805121 8pvm:A (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    805122 8pvm:A (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805123 8pvm:A (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805124 8pvm:A (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805125 8pvm:A (1.38) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805126 8pvm:A (1.38) BS06 FES 1.12.7.2 GO:0005506 ... P29166 37983562
    805127 8pvm:A (1.38) BS07 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    805128 8pvm:A (1.38) BS08 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    805129 8pvm:B (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    805130 8pvm:B (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805131 8pvm:B (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805132 8pvm:B (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805133 8pvm:B (1.38) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    805134 8pvm:B (1.38) BS06 FES 1.12.7.2 GO:0005506 ... P29166 37983562
    805135 8pvm:B (1.38) BS07 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    805136 8pvm:B (1.38) BS08 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    805137 8pvm:B (1.38) BS09 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    805138 8pvo:A (2.25) BS01 FW3 2.7.11.1 GO:0004672 ... P68400 39067440
    805139 8pvo:B (2.25) BS01 FW3 2.7.11.1 GO:0004672 ... P68400 39067440
    805140 8pvp:A (2.6) BS01 FWU 2.7.11.1 GO:0004672 ... P68400 39067440
    805141 8pvp:B (2.6) BS01 FWU 2.7.11.1 GO:0004672 ... P68400 39067440
    805142 8pvs:A (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    805143 8pvs:A (1.68) BS02 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    805144 8pvs:A (1.68) BS03 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    805145 8pvs:B (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    805146 8pvs:B (1.68) BS02 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    805147 8pvs:B (1.68) BS03 CA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    805148 8pvv:A (2.81) BS01 rna ? GO:0003676 ... O28951 38197228
    805149 8pvv:A (2.81) BS02 dna ? GO:0003676 ... O28951 38197228
    805150 8pvv:A (2.81) BS03 MG ? GO:0003676 ... O28951 38197228
    805151 8pvv:C (2.81) BS01 rna ? N/A A0A075WKW4 38197228
    805152 8pvv:C (2.81) BS02 dna ? N/A A0A075WKW4 38197228
    805153 8pw0:A (2.2) BS01 dna ? GO:0003677 ... Q9RRF3 38652591
    805154 8pw0:A (2.2) BS02 MN ? GO:0003677 ... Q9RRF3 38652591
    805155 8pw0:A (2.2) BS03 MN ? GO:0003677 ... Q9RRF3 38652591
    805156 8pw0:A (2.2) BS04 MN ? GO:0003677 ... Q9RRF3 38652591
    805157 8pw0:A (2.2) BS05 MN ? GO:0003677 ... Q9RRF3 38652591
    805158 8pw1:A (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805159 8pw1:B (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805160 8pw1:C (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805161 8pw1:D (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805162 8pw1:E (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805163 8pw1:F (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805164 8pw1:G (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805165 8pw1:H (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805166 8pw1:I (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805167 8pw1:J (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    805168 8pw5:1 (3.6) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    805169 8pw5:1 (3.6) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    805170 8pw5:2 (3.6) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    805171 8pw5:3 (3.6) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805172 8pw5:3 (3.6) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805173 8pw5:3 (3.6) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805174 8pw5:6 (3.6) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    805175 8pw5:7 (3.6) BS01 ZN ? GO:0001822 ... P52503 38575788
    805176 8pw5:9 (3.6) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    805177 8pw5:9 (3.6) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    805178 8pw5:C (3.6) BS01 HEM ? GO:0001666 ... P00158 38575788
    805179 8pw5:C (3.6) BS02 HEM ? GO:0001666 ... P00158 38575788
    805180 8pw5:D (3.6) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    805181 8pw5:D1 (3.6) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    805182 8pw5:E (3.6) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    805183 8pw5:N (3.6) BS01 HEM ? GO:0001666 ... P00158 38575788
    805184 8pw5:N (3.6) BS02 HEM ? GO:0001666 ... P00158 38575788
    805185 8pw5:O (3.6) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    805186 8pw5:O1 (3.6) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    805187 8pw5:P (3.6) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    805188 8pw5:P1 (3.6) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    805189 8pw5:W1 (3.6) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    805190 8pw5:a (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    805191 8pw5:a (3.6) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805192 8pw5:a (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805193 8pw5:a (3.6) BS04 MG 7.1.1.9 GO:0001666 ... P00397 38575788
    805194 8pw5:b (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    805195 8pw5:b (3.6) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    805196 8pw5:f (3.6) BS01 ZN ? GO:0005739 ... P19536 38575788
    805197 8pw5:n (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    805198 8pw5:n (3.6) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805199 8pw5:n (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805200 8pw5:n (3.6) BS04 MG 7.1.1.9 GO:0001666 ... P00397 38575788
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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