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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804801 8pv7:Lh (2.12) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804802 8pv7:Lh (2.12) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804803 8pv7:Li (2.12) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804804 8pv7:Lj (2.12) BS01 rna ? GO:0003723 ... G0S101 37921038
    804805 8pv7:Lj (2.12) BS02 rna ? GO:0003723 ... G0S101 37921038
    804806 8pv7:Lj (2.12) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804807 8pv7:Lk (2.12) BS01 rna ? GO:0003735 ... G0SG89 37921038
    804808 8pv7:Ll (2.12) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804809 8pv7:Ll (2.12) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804810 8pv7:Lp (2.12) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804811 8pv7:Lp (2.12) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804812 8pv7:Lq (2.12) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804813 8pv8:CF (2.91) BS01 rna ? GO:0000027 ... G0S616 37921038
    804814 8pv8:CH (2.91) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804815 8pv8:CH (2.91) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804816 8pv8:CH (2.91) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804817 8pv8:CH (2.91) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804818 8pv8:CK (2.91) BS01 rna ? GO:0000460 ... G0S081 37921038
    804819 8pv8:CL (2.91) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804820 8pv8:CL (2.91) BS02 rna ? GO:0005525 ... G0SEW3 37921038
    804821 8pv8:CN (2.91) BS01 rna ? GO:0000054 ... G0S683 37921038
    804822 8pv8:CO (2.91) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804823 8pv8:CQ (2.91) BS01 rna ? GO:0005730 ... G0S497 37921038
    804824 8pv8:CQ (2.91) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804825 8pv8:CR (2.91) BS01 rna ? GO:0000055 ... G0S215 37921038
    804826 8pv8:CS (2.91) BS01 rna ? GO:0005634 ... P0CT45 37921038
    804827 8pv8:CU (2.91) BS01 rna ? GO:0005634 ... G0S1T5 37921038
    804828 8pv8:CW (2.91) BS01 rna ? GO:0005634 ... G0S5R0 37921038
    804829 8pv8:Cb (2.91) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804830 8pv8:Cb (2.91) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804831 8pv8:Cd (2.91) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804832 8pv8:Cd (2.91) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804833 8pv8:Cd (2.91) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804834 8pv8:Ch (2.91) BS01 rna ? GO:0000027 ... G0SC29 37921038
    804835 8pv8:Cz (2.91) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804836 8pv8:Cz (2.91) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804837 8pv8:LA (2.91) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804838 8pv8:LB (2.91) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804839 8pv8:LC (2.91) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804840 8pv8:LC (2.91) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804841 8pv8:LD (2.91) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804842 8pv8:LD (2.91) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804843 8pv8:LE (2.91) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804844 8pv8:LF (2.91) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804845 8pv8:LF (2.91) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    804846 8pv8:LG (2.91) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804847 8pv8:LG (2.91) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804848 8pv8:LJ (2.91) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804849 8pv8:LJ (2.91) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804850 8pv8:LK (2.91) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804851 8pv8:LL (2.91) BS01 rna ? GO:0003723 ... G0S992 37921038
    804852 8pv8:LL (2.91) BS02 rna ? GO:0003723 ... G0S992 37921038
    804853 8pv8:LM (2.91) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804854 8pv8:LN (2.91) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804855 8pv8:LN (2.91) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804856 8pv8:LO (2.91) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804857 8pv8:LP (2.91) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804858 8pv8:LP (2.91) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804859 8pv8:LQ (2.91) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804860 8pv8:LR (2.91) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804861 8pv8:LS (2.91) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804862 8pv8:LS (2.91) BS02 rna ? GO:0003735 ... G0SCE2 37921038
    804863 8pv8:LT (2.91) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804864 8pv8:LT (2.91) BS02 rna ? GO:0003735 ... G0S0Z3 37921038
    804865 8pv8:LU (2.91) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804866 8pv8:LV (2.91) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804867 8pv8:LX (2.91) BS01 rna ? GO:0000027 ... G0S507 37921038
    804868 8pv8:LX (2.91) BS02 rna ? GO:0000027 ... G0S507 37921038
    804869 8pv8:LY (2.91) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804870 8pv8:LY (2.91) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804871 8pv8:LZ (2.91) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804872 8pv8:Lb (2.91) BS01 rna ? GO:0002181 ... Q2H9W4 37921038
    804873 8pv8:Lc (2.91) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804874 8pv8:Ld (2.91) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804875 8pv8:Le (2.91) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804876 8pv8:Lf (2.91) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804877 8pv8:Lg (2.91) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804878 8pv8:Lg (2.91) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804879 8pv8:Lh (2.91) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804880 8pv8:Lh (2.91) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804881 8pv8:Li (2.91) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804882 8pv8:Lj (2.91) BS01 rna ? GO:0003723 ... G0S101 37921038
    804883 8pv8:Lj (2.91) BS02 rna ? GO:0003723 ... G0S101 37921038
    804884 8pv8:Lj (2.91) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804885 8pv8:Ll (2.91) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804886 8pv8:Ll (2.91) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804887 8pv8:Lp (2.91) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804888 8pv8:Lp (2.91) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804889 8pv8:Lq (2.91) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804890 8pv8:Lt (2.91) BS01 rna ? GO:0000470 ... G0S4Z9 37921038
    804891 8pva:0 (4.5) BS01 rna ? GO:0000027 ... P0A7N9 38011573
    804892 8pva:1 (4.5) BS01 rna ? GO:0002181 ... P0A7P5 38011573
    804893 8pva:2 (4.5) BS01 rna ? GO:0002181 ... P0A7Q1 38011573
    804894 8pva:3 (4.5) BS01 rna ? GO:0002181 ... P0A7Q6 38011573
    804895 8pva:3 (4.5) BS02 ZN ? GO:0002181 ... P0A7Q6 38011573
    804896 8pva:4 (4.5) BS01 rna ? GO:0002181 ... P0A7M9 38011573
    804897 8pva:4 (4.5) BS02 ZN ? GO:0002181 ... P0A7M9 38011573
    804898 8pva:B (4.5) BS01 rna ? GO:0000028 ... P0A7V0 38011573
    804899 8pva:C (4.5) BS01 rna ? GO:0000028 ... P0A7V3 38011573
    804900 8pva:D (4.5) BS01 rna ? GO:0000028 ... P0A7V8 38011573
    804901 8pva:E (4.5) BS01 rna ? GO:0000028 ... P0A7W1 38011573
    804902 8pva:F (4.5) BS01 rna ? GO:0002181 ... P02358 38011573
    804903 8pva:G (4.5) BS01 rna ? GO:0000028 ... P02359 38011573
    804904 8pva:G (4.5) BS02 rna ? GO:0000028 ... P02359 38011573
    804905 8pva:H (4.5) BS01 rna ? GO:0000028 ... P0A7W7 38011573
    804906 8pva:I (4.5) BS01 rna ? GO:0000049 ... P0A7X3 38011573
    804907 8pva:I (4.5) BS02 rna ? GO:0000049 ... P0A7X3 38011573
    804908 8pva:J (4.5) BS01 rna ? GO:0000049 ... P0A7R5 38011573
    804909 8pva:K (4.5) BS01 rna ? GO:0002181 ... P0A7R9 38011573
    804910 8pva:L (4.5) BS01 rna ? GO:0000049 ... P0A7S3 38011573
    804911 8pva:M (4.5) BS01 rna ? GO:0000049 ... P0A7S9 38011573
    804912 8pva:M (4.5) BS02 rna ? GO:0000049 ... P0A7S9 38011573
    804913 8pva:N (4.5) BS01 rna ? GO:0000028 ... P0AG59 38011573
    804914 8pva:O (4.5) BS01 rna ? GO:0000028 ... P0ADZ4 38011573
    804915 8pva:O (4.5) BS02 rna ? GO:0000028 ... P0ADZ4 38011573
    804916 8pva:P (4.5) BS01 rna ? GO:0000028 ... P0A7T3 38011573
    804917 8pva:Q (4.5) BS01 rna ? GO:0000028 ... P0AG63 38011573
    804918 8pva:R (4.5) BS01 rna ? GO:0002181 ... P0A7T7 38011573
    804919 8pva:S (4.5) BS01 rna ? GO:0000028 ... P0A7U3 38011573
    804920 8pva:T (4.5) BS01 rna ? GO:0000028 ... P0A7U7 38011573
    804921 8pva:U (4.5) BS01 rna ? GO:0000028 ... P68679 38011573
    804922 8pva:c (4.5) BS01 rna ? GO:0000027 ... P60422 38011573
    804923 8pva:d (4.5) BS01 rna ? GO:0000027 ... P60438 38011573
    804924 8pva:e (4.5) BS01 rna ? GO:0001070 ... P60723 38011573
    804925 8pva:f (4.5) BS01 rna ? GO:0000027 ... P62399 38011573
    804926 8pva:f (4.5) BS02 rna ? GO:0000027 ... P62399 38011573
    804927 8pva:f (4.5) BS03 rna ? GO:0000027 ... P62399 38011573
    804928 8pva:g (4.5) BS01 rna ? GO:0000027 ... P0AG55 38011573
    804929 8pva:h (4.5) BS01 rna ? GO:0002181 ... P0A7R1 38011573
    804930 8pva:i (4.5) BS01 rna ? GO:0002181 ... P0AA10 38011573
    804931 8pva:j (4.5) BS01 rna ? GO:0002181 ... P0ADY3 38011573
    804932 8pva:j (4.5) BS02 rna ? GO:0002181 ... P0ADY3 38011573
    804933 8pva:k (4.5) BS01 rna ? GO:0002181 ... P02413 38011573
    804934 8pva:l (4.5) BS01 rna ? GO:0000027 ... P0ADY7 38011573
    804935 8pva:l (4.5) BS02 rna ? GO:0000027 ... P0ADY7 38011573
    804936 8pva:l (4.5) BS03 rna ? GO:0000027 ... P0ADY7 38011573
    804937 8pva:m (4.5) BS01 rna ? GO:0000027 ... P0AG44 38011573
    804938 8pva:n (4.5) BS01 rna ? GO:0002181 ... P0C018 38011573
    804939 8pva:n (4.5) BS02 rna ? GO:0002181 ... P0C018 38011573
    804940 8pva:o (4.5) BS01 rna ? GO:0000027 ... P0A7K6 38011573
    804941 8pva:o (4.5) BS02 rna ? GO:0000027 ... P0A7K6 38011573
    804942 8pva:p (4.5) BS01 rna ? GO:0000027 ... P0A7L3 38011573
    804943 8pva:q (4.5) BS01 rna ? GO:0002181 ... P0AG48 38011573
    804944 8pva:r (4.5) BS01 rna ? GO:0002181 ... P61175 38011573
    804945 8pva:s (4.5) BS01 rna ? GO:0000027 ... P0ADZ0 38011573
    804946 8pva:t (4.5) BS01 rna ? GO:0000027 ... P60624 38011573
    804947 8pva:u (4.5) BS01 rna ? GO:0000027 ... P68919 38011573
    804948 8pva:v (4.5) BS01 rna ? GO:0000027 ... P0A7L8 38011573
    804949 8pva:v (4.5) BS02 rna ? GO:0000027 ... P0A7L8 38011573
    804950 8pva:w (4.5) BS01 rna ? GO:0000027 ... P0A7M2 38011573
    804951 8pva:x (4.5) BS01 rna ? GO:0000027 ... P0A7M6 38011573
    804952 8pva:y (4.5) BS01 rna ? GO:0000027 ... P0AG51 38011573
    804953 8pva:y (4.5) BS02 rna ? GO:0000027 ... P0AG51 38011573
    804954 8pva:z (4.5) BS01 rna ? GO:0000027 ... P0A7N4 38011573
    804955 8pvb:A (3.6) BS01 HSM ? GO:0004888 ... P28472 38011573
    804956 8pvb:A (3.6) BS02 V8D ? GO:0004888 ... P28472 38011573
    804957 8pvc:A (2.6) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 38011573
    804958 8pvd:A (3.4) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 38011573
    804959 8pvd:A (3.4) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 38011573
    804960 8pvf:A (2.9) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 38011573
    804961 8pvk:CB (2.55) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    804962 8pvk:CF (2.55) BS01 rna ? GO:0000027 ... G0S616 37921038
    804963 8pvk:CH (2.55) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804964 8pvk:CH (2.55) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804965 8pvk:CH (2.55) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804966 8pvk:CH (2.55) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804967 8pvk:CI (2.55) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    804968 8pvk:CJ (2.55) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804969 8pvk:CJ (2.55) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804970 8pvk:CK (2.55) BS01 rna ? GO:0000460 ... G0S081 37921038
    804971 8pvk:CL (2.55) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804972 8pvk:CM (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804973 8pvk:CM (2.55) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    804974 8pvk:CN (2.55) BS01 rna ? GO:0000054 ... G0S683 37921038
    804975 8pvk:CO (2.55) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804976 8pvk:CQ (2.55) BS01 rna ? GO:0005730 ... G0S497 37921038
    804977 8pvk:CQ (2.55) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804978 8pvk:Cb (2.55) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804979 8pvk:Cb (2.55) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804980 8pvk:Cd (2.55) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804981 8pvk:Cd (2.55) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804982 8pvk:Cd (2.55) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804983 8pvk:Cd (2.55) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804984 8pvk:Ce (2.55) BS01 rna ? GO:0000027 ... G0S495 37921038
    804985 8pvk:Ce (2.55) BS02 rna ? GO:0000027 ... G0S495 37921038
    804986 8pvk:Ce (2.55) BS03 rna ? GO:0000027 ... G0S495 37921038
    804987 8pvk:Cf (2.55) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804988 8pvk:Cf (2.55) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804989 8pvk:Cg (2.55) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804990 8pvk:Cz (2.55) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804991 8pvk:Cz (2.55) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804992 8pvk:LA (2.55) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804993 8pvk:LB (2.55) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804994 8pvk:LC (2.55) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804995 8pvk:LC (2.55) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804996 8pvk:LD (2.55) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804997 8pvk:LD (2.55) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804998 8pvk:LE (2.55) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804999 8pvk:LF (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    805000 8pvk:LG (2.55) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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