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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804601 8pv5:LE (2.86) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804602 8pv5:LF (2.86) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804603 8pv5:LG (2.86) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804604 8pv5:LG (2.86) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804605 8pv5:LJ (2.86) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804606 8pv5:LJ (2.86) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804607 8pv5:LK (2.86) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804608 8pv5:LL (2.86) BS01 rna ? GO:0003723 ... G0S992 37921038
    804609 8pv5:LL (2.86) BS02 rna ? GO:0003723 ... G0S992 37921038
    804610 8pv5:LM (2.86) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804611 8pv5:LN (2.86) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804612 8pv5:LN (2.86) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804613 8pv5:LO (2.86) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804614 8pv5:LP (2.86) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804615 8pv5:LP (2.86) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804616 8pv5:LQ (2.86) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804617 8pv5:LR (2.86) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804618 8pv5:LS (2.86) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804619 8pv5:LT (2.86) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804620 8pv5:LU (2.86) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804621 8pv5:LV (2.86) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804622 8pv5:LX (2.86) BS01 rna ? GO:0000027 ... G0S507 37921038
    804623 8pv5:LX (2.86) BS02 rna ? GO:0000027 ... G0S507 37921038
    804624 8pv5:LY (2.86) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804625 8pv5:LY (2.86) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804626 8pv5:LZ (2.86) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804627 8pv5:Lc (2.86) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804628 8pv5:Ld (2.86) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804629 8pv5:Le (2.86) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804630 8pv5:Lf (2.86) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804631 8pv5:Lg (2.86) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804632 8pv5:Lg (2.86) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804633 8pv5:Lh (2.86) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804634 8pv5:Lh (2.86) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804635 8pv5:Li (2.86) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804636 8pv5:Lj (2.86) BS01 rna ? GO:0003723 ... G0S101 37921038
    804637 8pv5:Lj (2.86) BS02 rna ? GO:0003723 ... G0S101 37921038
    804638 8pv5:Lj (2.86) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804639 8pv5:Lk (2.86) BS01 rna ? GO:0003735 ... G0SG89 37921038
    804640 8pv5:Ll (2.86) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804641 8pv5:Ll (2.86) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804642 8pv5:Lp (2.86) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804643 8pv5:Lp (2.86) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804644 8pv5:Lq (2.86) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804645 8pv6:CF (2.94) BS01 rna ? GO:0000027 ... G0S616 37921038
    804646 8pv6:CH (2.94) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804647 8pv6:CH (2.94) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804648 8pv6:CH (2.94) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804649 8pv6:CH (2.94) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804650 8pv6:CJ (2.94) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804651 8pv6:CJ (2.94) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804652 8pv6:CK (2.94) BS01 rna ? GO:0000460 ... G0S081 37921038
    804653 8pv6:CL (2.94) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804654 8pv6:CL (2.94) BS02 rna ? GO:0005525 ... G0SEW3 37921038
    804655 8pv6:CM (2.94) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804656 8pv6:CM (2.94) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    804657 8pv6:CN (2.94) BS01 rna ? GO:0000054 ... G0S683 37921038
    804658 8pv6:CO (2.94) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804659 8pv6:CQ (2.94) BS01 rna ? GO:0005730 ... G0S497 37921038
    804660 8pv6:CQ (2.94) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804661 8pv6:CR (2.94) BS01 rna ? GO:0000055 ... G0S215 37921038
    804662 8pv6:CS (2.94) BS01 rna ? GO:0005634 ... P0CT45 37921038
    804663 8pv6:CU (2.94) BS01 rna ? GO:0005634 ... G0S1T5 37921038
    804664 8pv6:CW (2.94) BS01 rna ? GO:0005634 ... G0S5R0 37921038
    804665 8pv6:Cb (2.94) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804666 8pv6:Cb (2.94) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804667 8pv6:Cd (2.94) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804668 8pv6:Cd (2.94) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804669 8pv6:Cd (2.94) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804670 8pv6:Cd (2.94) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804671 8pv6:Ce (2.94) BS01 rna ? GO:0000027 ... G0S495 37921038
    804672 8pv6:Ce (2.94) BS02 rna ? GO:0000027 ... G0S495 37921038
    804673 8pv6:Ch (2.94) BS01 rna ? GO:0000027 ... G0SC29 37921038
    804674 8pv6:Cz (2.94) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804675 8pv6:Cz (2.94) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804676 8pv6:LA (2.94) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804677 8pv6:LB (2.94) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804678 8pv6:LC (2.94) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804679 8pv6:LC (2.94) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804680 8pv6:LD (2.94) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804681 8pv6:LD (2.94) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804682 8pv6:LE (2.94) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804683 8pv6:LF (2.94) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804684 8pv6:LF (2.94) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    804685 8pv6:LG (2.94) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804686 8pv6:LG (2.94) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804687 8pv6:LG (2.94) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    804688 8pv6:LJ (2.94) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804689 8pv6:LJ (2.94) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804690 8pv6:LK (2.94) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804691 8pv6:LL (2.94) BS01 rna ? GO:0003723 ... G0S992 37921038
    804692 8pv6:LL (2.94) BS02 rna ? GO:0003723 ... G0S992 37921038
    804693 8pv6:LM (2.94) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804694 8pv6:LN (2.94) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804695 8pv6:LN (2.94) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804696 8pv6:LO (2.94) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804697 8pv6:LP (2.94) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804698 8pv6:LP (2.94) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804699 8pv6:LQ (2.94) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804700 8pv6:LR (2.94) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804701 8pv6:LS (2.94) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804702 8pv6:LS (2.94) BS02 rna ? GO:0003735 ... G0SCE2 37921038
    804703 8pv6:LT (2.94) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804704 8pv6:LT (2.94) BS02 rna ? GO:0003735 ... G0S0Z3 37921038
    804705 8pv6:LU (2.94) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804706 8pv6:LV (2.94) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804707 8pv6:LX (2.94) BS01 rna ? GO:0000027 ... G0S507 37921038
    804708 8pv6:LX (2.94) BS02 rna ? GO:0000027 ... G0S507 37921038
    804709 8pv6:LY (2.94) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804710 8pv6:LY (2.94) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804711 8pv6:LZ (2.94) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804712 8pv6:Lb (2.94) BS01 rna ? GO:0002181 ... Q2H9W4 37921038
    804713 8pv6:Lc (2.94) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804714 8pv6:Ld (2.94) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804715 8pv6:Le (2.94) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804716 8pv6:Lf (2.94) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804717 8pv6:Lg (2.94) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804718 8pv6:Lg (2.94) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804719 8pv6:Lh (2.94) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804720 8pv6:Lh (2.94) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804721 8pv6:Li (2.94) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804722 8pv6:Lj (2.94) BS01 rna ? GO:0003723 ... G0S101 37921038
    804723 8pv6:Lj (2.94) BS02 rna ? GO:0003723 ... G0S101 37921038
    804724 8pv6:Lj (2.94) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804725 8pv6:Lk (2.94) BS01 rna ? GO:0003735 ... G0SG89 37921038
    804726 8pv6:Ll (2.94) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804727 8pv6:Ll (2.94) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804728 8pv6:Lp (2.94) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804729 8pv6:Lp (2.94) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804730 8pv6:Lq (2.94) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804731 8pv6:Lr (2.94) BS01 rna ? GO:0000470 ... G0S4Z9 37921038
    804732 8pv7:CB (2.12) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    804733 8pv7:CF (2.12) BS01 rna ? GO:0000027 ... G0S616 37921038
    804734 8pv7:CH (2.12) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804735 8pv7:CH (2.12) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804736 8pv7:CH (2.12) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804737 8pv7:CH (2.12) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804738 8pv7:CI (2.12) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    804739 8pv7:CJ (2.12) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804740 8pv7:CJ (2.12) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804741 8pv7:CK (2.12) BS01 rna ? GO:0000460 ... G0S081 37921038
    804742 8pv7:CL (2.12) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804743 8pv7:CM (2.12) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804744 8pv7:CM (2.12) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    804745 8pv7:CN (2.12) BS01 rna ? GO:0000054 ... G0S683 37921038
    804746 8pv7:CO (2.12) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804747 8pv7:CQ (2.12) BS01 rna ? GO:0005730 ... G0S497 37921038
    804748 8pv7:CQ (2.12) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804749 8pv7:Cb (2.12) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804750 8pv7:Cb (2.12) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804751 8pv7:Cd (2.12) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804752 8pv7:Cd (2.12) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804753 8pv7:Cd (2.12) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804754 8pv7:Cd (2.12) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804755 8pv7:Ce (2.12) BS01 rna ? GO:0000027 ... G0S495 37921038
    804756 8pv7:Ce (2.12) BS02 rna ? GO:0000027 ... G0S495 37921038
    804757 8pv7:Cf (2.12) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804758 8pv7:Cf (2.12) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804759 8pv7:Cg (2.12) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804760 8pv7:Cz (2.12) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804761 8pv7:Cz (2.12) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804762 8pv7:LA (2.12) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804763 8pv7:LB (2.12) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804764 8pv7:LC (2.12) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804765 8pv7:LC (2.12) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804766 8pv7:LD (2.12) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804767 8pv7:LD (2.12) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804768 8pv7:LE (2.12) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804769 8pv7:LF (2.12) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804770 8pv7:LG (2.12) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804771 8pv7:LG (2.12) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804772 8pv7:LG (2.12) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    804773 8pv7:LJ (2.12) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804774 8pv7:LJ (2.12) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804775 8pv7:LK (2.12) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804776 8pv7:LL (2.12) BS01 rna ? GO:0003723 ... G0S992 37921038
    804777 8pv7:LL (2.12) BS02 rna ? GO:0003723 ... G0S992 37921038
    804778 8pv7:LM (2.12) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804779 8pv7:LN (2.12) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804780 8pv7:LN (2.12) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804781 8pv7:LO (2.12) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804782 8pv7:LP (2.12) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804783 8pv7:LP (2.12) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804784 8pv7:LQ (2.12) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804785 8pv7:LR (2.12) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804786 8pv7:LS (2.12) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804787 8pv7:LT (2.12) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804788 8pv7:LU (2.12) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804789 8pv7:LV (2.12) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804790 8pv7:LX (2.12) BS01 rna ? GO:0000027 ... G0S507 37921038
    804791 8pv7:LX (2.12) BS02 rna ? GO:0000027 ... G0S507 37921038
    804792 8pv7:LY (2.12) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804793 8pv7:LY (2.12) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804794 8pv7:LZ (2.12) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804795 8pv7:Lc (2.12) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804796 8pv7:Ld (2.12) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804797 8pv7:Le (2.12) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804798 8pv7:Lf (2.12) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804799 8pv7:Lg (2.12) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804800 8pv7:Lg (2.12) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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