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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804401 8pv2:Ll (2.63) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804402 8pv2:Ll (2.63) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804403 8pv2:Lp (2.63) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804404 8pv2:Lp (2.63) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804405 8pv2:Lq (2.63) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804406 8pv3:CB (2.8) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    804407 8pv3:CF (2.8) BS01 rna ? GO:0000027 ... G0S616 37921038
    804408 8pv3:CH (2.8) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804409 8pv3:CH (2.8) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804410 8pv3:CH (2.8) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804411 8pv3:CH (2.8) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804412 8pv3:CI (2.8) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    804413 8pv3:CJ (2.8) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804414 8pv3:CJ (2.8) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804415 8pv3:CK (2.8) BS01 rna ? GO:0000460 ... G0S081 37921038
    804416 8pv3:CL (2.8) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804417 8pv3:CM (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804418 8pv3:CM (2.8) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    804419 8pv3:CO (2.8) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804420 8pv3:CQ (2.8) BS01 rna ? GO:0005730 ... G0S497 37921038
    804421 8pv3:CQ (2.8) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804422 8pv3:Cb (2.8) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804423 8pv3:Cb (2.8) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804424 8pv3:Cd (2.8) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804425 8pv3:Cd (2.8) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    804426 8pv3:Cd (2.8) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804427 8pv3:Cd (2.8) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    804428 8pv3:Ce (2.8) BS01 rna ? GO:0000027 ... G0S495 37921038
    804429 8pv3:Ce (2.8) BS02 rna ? GO:0000027 ... G0S495 37921038
    804430 8pv3:Ce (2.8) BS03 rna ? GO:0000027 ... G0S495 37921038
    804431 8pv3:Cf (2.8) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804432 8pv3:Cf (2.8) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804433 8pv3:Cg (2.8) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804434 8pv3:Cz (2.8) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804435 8pv3:Cz (2.8) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804436 8pv3:LA (2.8) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804437 8pv3:LB (2.8) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804438 8pv3:LC (2.8) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804439 8pv3:LC (2.8) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804440 8pv3:LD (2.8) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804441 8pv3:LD (2.8) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804442 8pv3:LE (2.8) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804443 8pv3:LF (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804444 8pv3:LG (2.8) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804445 8pv3:LG (2.8) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804446 8pv3:LG (2.8) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    804447 8pv3:LJ (2.8) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804448 8pv3:LJ (2.8) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804449 8pv3:LK (2.8) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804450 8pv3:LL (2.8) BS01 rna ? GO:0003723 ... G0S992 37921038
    804451 8pv3:LL (2.8) BS02 rna ? GO:0003723 ... G0S992 37921038
    804452 8pv3:LM (2.8) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804453 8pv3:LN (2.8) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804454 8pv3:LN (2.8) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804455 8pv3:LO (2.8) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804456 8pv3:LP (2.8) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804457 8pv3:LP (2.8) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804458 8pv3:LQ (2.8) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804459 8pv3:LR (2.8) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804460 8pv3:LS (2.8) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804461 8pv3:LT (2.8) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804462 8pv3:LU (2.8) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804463 8pv3:LV (2.8) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804464 8pv3:LX (2.8) BS01 rna ? GO:0000027 ... G0S507 37921038
    804465 8pv3:LX (2.8) BS02 rna ? GO:0000027 ... G0S507 37921038
    804466 8pv3:LY (2.8) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804467 8pv3:LY (2.8) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804468 8pv3:LZ (2.8) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804469 8pv3:Lc (2.8) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804470 8pv3:Ld (2.8) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804471 8pv3:Le (2.8) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804472 8pv3:Lf (2.8) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804473 8pv3:Lg (2.8) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804474 8pv3:Lg (2.8) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804475 8pv3:Lh (2.8) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804476 8pv3:Lh (2.8) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804477 8pv3:Li (2.8) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804478 8pv3:Lj (2.8) BS01 rna ? GO:0003723 ... G0S101 37921038
    804479 8pv3:Lj (2.8) BS02 rna ? GO:0003723 ... G0S101 37921038
    804480 8pv3:Lj (2.8) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804481 8pv3:Lk (2.8) BS01 rna ? GO:0003735 ... G0SG89 37921038
    804482 8pv3:Ll (2.8) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804483 8pv3:Ll (2.8) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804484 8pv3:Lp (2.8) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804485 8pv3:Lp (2.8) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804486 8pv3:Lq (2.8) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804487 8pv4:CB (2.9) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    804488 8pv4:CF (2.9) BS01 rna ? GO:0000027 ... G0S616 37921038
    804489 8pv4:CH (2.9) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804490 8pv4:CH (2.9) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804491 8pv4:CH (2.9) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804492 8pv4:CH (2.9) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804493 8pv4:CI (2.9) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    804494 8pv4:CJ (2.9) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804495 8pv4:CJ (2.9) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804496 8pv4:CK (2.9) BS01 rna ? GO:0000460 ... G0S081 37921038
    804497 8pv4:CL (2.9) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804498 8pv4:CM (2.9) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804499 8pv4:CN (2.9) BS01 rna ? GO:0000054 ... G0S683 37921038
    804500 8pv4:CO (2.9) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804501 8pv4:CQ (2.9) BS01 rna ? GO:0005730 ... G0S497 37921038
    804502 8pv4:CQ (2.9) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804503 8pv4:CR (2.9) BS01 rna ? GO:0000055 ... G0S215 37921038
    804504 8pv4:CR (2.9) BS02 rna ? GO:0000055 ... G0S215 37921038
    804505 8pv4:CU (2.9) BS01 rna ? GO:0005634 ... G0S1T5 37921038
    804506 8pv4:CW (2.9) BS01 rna ? GO:0005634 ... G0S5R0 37921038
    804507 8pv4:Cb (2.9) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804508 8pv4:Cb (2.9) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804509 8pv4:Cd (2.9) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804510 8pv4:Cd (2.9) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804511 8pv4:Cd (2.9) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804512 8pv4:Cd (2.9) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804513 8pv4:Ce (2.9) BS01 rna ? GO:0000027 ... G0S495 37921038
    804514 8pv4:Ce (2.9) BS02 rna ? GO:0000027 ... G0S495 37921038
    804515 8pv4:Ce (2.9) BS03 rna ? GO:0000027 ... G0S495 37921038
    804516 8pv4:Cf (2.9) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804517 8pv4:Cf (2.9) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804518 8pv4:Cg (2.9) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804519 8pv4:Cz (2.9) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804520 8pv4:Cz (2.9) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804521 8pv4:LA (2.9) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804522 8pv4:LB (2.9) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804523 8pv4:LC (2.9) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804524 8pv4:LC (2.9) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804525 8pv4:LD (2.9) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804526 8pv4:LD (2.9) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804527 8pv4:LE (2.9) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804528 8pv4:LF (2.9) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804529 8pv4:LG (2.9) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804530 8pv4:LG (2.9) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804531 8pv4:LG (2.9) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    804532 8pv4:LJ (2.9) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804533 8pv4:LJ (2.9) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804534 8pv4:LK (2.9) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804535 8pv4:LL (2.9) BS01 rna ? GO:0003723 ... G0S992 37921038
    804536 8pv4:LL (2.9) BS02 rna ? GO:0003723 ... G0S992 37921038
    804537 8pv4:LM (2.9) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804538 8pv4:LN (2.9) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804539 8pv4:LN (2.9) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804540 8pv4:LO (2.9) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804541 8pv4:LP (2.9) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804542 8pv4:LP (2.9) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804543 8pv4:LQ (2.9) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804544 8pv4:LR (2.9) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804545 8pv4:LS (2.9) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804546 8pv4:LT (2.9) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804547 8pv4:LU (2.9) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804548 8pv4:LV (2.9) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804549 8pv4:LX (2.9) BS01 rna ? GO:0000027 ... G0S507 37921038
    804550 8pv4:LX (2.9) BS02 rna ? GO:0000027 ... G0S507 37921038
    804551 8pv4:LY (2.9) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804552 8pv4:LY (2.9) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804553 8pv4:LZ (2.9) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804554 8pv4:Lc (2.9) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804555 8pv4:Ld (2.9) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804556 8pv4:Le (2.9) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804557 8pv4:Lf (2.9) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804558 8pv4:Lg (2.9) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804559 8pv4:Lg (2.9) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804560 8pv4:Lh (2.9) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804561 8pv4:Lh (2.9) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804562 8pv4:Li (2.9) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804563 8pv4:Lj (2.9) BS01 rna ? GO:0003723 ... G0S101 37921038
    804564 8pv4:Lj (2.9) BS02 rna ? GO:0003723 ... G0S101 37921038
    804565 8pv4:Lj (2.9) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804566 8pv4:Lk (2.9) BS01 rna ? GO:0003735 ... G0SG89 37921038
    804567 8pv4:Ll (2.9) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804568 8pv4:Ll (2.9) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804569 8pv4:Lp (2.9) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804570 8pv4:Lp (2.9) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804571 8pv4:Lq (2.9) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804572 8pv4:Lr (2.9) BS01 rna ? GO:0000470 ... G0S4Z9 37921038
    804573 8pv5:CF (2.86) BS01 rna ? GO:0000027 ... G0S616 37921038
    804574 8pv5:CH (2.86) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804575 8pv5:CH (2.86) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804576 8pv5:CH (2.86) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804577 8pv5:CH (2.86) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804578 8pv5:CK (2.86) BS01 rna ? GO:0000460 ... G0S081 37921038
    804579 8pv5:CL (2.86) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804580 8pv5:CN (2.86) BS01 rna ? GO:0000054 ... G0S683 37921038
    804581 8pv5:CO (2.86) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804582 8pv5:CQ (2.86) BS01 rna ? GO:0005730 ... G0S497 37921038
    804583 8pv5:CQ (2.86) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804584 8pv5:Cb (2.86) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804585 8pv5:Cb (2.86) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804586 8pv5:Cd (2.86) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804587 8pv5:Cd (2.86) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804588 8pv5:Cd (2.86) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804589 8pv5:Cd (2.86) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804590 8pv5:Cf (2.86) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804591 8pv5:Cf (2.86) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804592 8pv5:Cg (2.86) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804593 8pv5:Cz (2.86) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804594 8pv5:Cz (2.86) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804595 8pv5:LA (2.86) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804596 8pv5:LB (2.86) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804597 8pv5:LC (2.86) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804598 8pv5:LC (2.86) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804599 8pv5:LD (2.86) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804600 8pv5:LD (2.86) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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