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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804201 8ptk:e (10.0) BS01 ADP ? GO:0003723 ... Q14204 38547289
    804202 8ptk:e (10.0) BS02 ATP ? GO:0003723 ... Q14204 38547289
    804203 8ptk:e (10.0) BS03 ADP ? GO:0003723 ... Q14204 38547289
    804204 8ptk:e (10.0) BS04 ADP ? GO:0003723 ... Q14204 38547289
    804205 8ptk:f (10.0) BS01 ADP ? GO:0003723 ... Q14204 38547289
    804206 8ptk:f (10.0) BS02 ATP ? GO:0003723 ... Q14204 38547289
    804207 8ptk:f (10.0) BS03 ADP ? GO:0003723 ... Q14204 38547289
    804208 8ptk:f (10.0) BS04 ADP ? GO:0003723 ... Q14204 38547289
    804209 8ptk:m (10.0) BS01 ADP ? GO:0003723 ... Q14204 38547289
    804210 8ptk:m (10.0) BS02 ATP ? GO:0003723 ... Q14204 38547289
    804211 8ptk:m (10.0) BS03 ANP ? GO:0003723 ... Q14204 38547289
    804212 8ptk:m (10.0) BS04 ANP ? GO:0003723 ... Q14204 38547289
    804213 8ptk:n (10.0) BS01 ADP ? GO:0003723 ... Q14204 38547289
    804214 8ptk:n (10.0) BS02 ATP ? GO:0003723 ... Q14204 38547289
    804215 8ptk:n (10.0) BS03 ANP ? GO:0003723 ... Q14204 38547289
    804216 8ptk:n (10.0) BS04 ANP ? GO:0003723 ... Q14204 38547289
    804217 8ptm:C (2.9) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 38622114
    804218 8ptm:D (2.9) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 38622114
    804219 8ptm:E (2.9) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 38622114
    804220 8pto:B (2.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 38622114
    804221 8pto:C (2.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 38622114
    804222 8pto:D (2.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 38622114
    804223 8ptq:A (1.55) BS01 EJI 3.1.1.23 GO:0004622 ... Q99685 38241614
    804224 8ptr:A (1.73) BS01 EFH 3.1.1.23 GO:0004622 ... Q99685 38241614
    804225 8ptx:A (2.87) BS01 rna ? GO:0000049 ... O95163 38750017
    804226 8ptx:C (2.87) BS01 rna 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804227 8ptx:C (2.87) BS02 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804228 8ptx:C (2.87) BS03 ACO 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804229 8ptx:C (2.87) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804230 8pty:C (3.58) BS01 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804231 8pty:C (3.58) BS02 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804232 8ptz:C (3.35) BS01 rna 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804233 8ptz:C (3.35) BS02 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804234 8ptz:C (3.35) BS03 A2U 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804235 8ptz:C (3.35) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804236 8pu0:A (4.25) BS01 rna ? GO:0000049 ... O95163 38750017
    804237 8pu0:C (4.25) BS01 rna 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804238 8pu0:C (4.25) BS02 DCA 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804239 8pu0:C (4.25) BS03 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804240 8pu0:C (4.25) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    804241 8pun:A (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    804242 8pun:A (2.3) BS02 9D2 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    804243 8pun:B (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    804244 8pun:B (2.3) BS02 9D2 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    804245 8pun:C (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    804246 8pun:D (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    804247 8puq:A (1.95) BS01 HEM ? GO:0004601 ... P01958 37860963
    804248 8puq:B (1.95) BS01 HEM ? GO:0004601 ... P02062 37860963
    804249 8pur:A (1.85) BS01 HEM ? GO:0004601 ... P01958 37860963
    804250 8pur:B (1.85) BS01 HEM ? GO:0004601 ... P02062 37860963
    804251 8pux:A (2.05) BS01 B3F ? N/A Q15562 38116405
    804252 8puy:B (2.2) BS01 F3Y ? N/A Q15562 38116405
    804253 8pv1:CB (2.56) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    804254 8pv1:CF (2.56) BS01 rna ? GO:0000027 ... G0S616 37921038
    804255 8pv1:CH (2.56) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804256 8pv1:CH (2.56) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804257 8pv1:CH (2.56) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804258 8pv1:CH (2.56) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804259 8pv1:CI (2.56) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    804260 8pv1:CJ (2.56) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804261 8pv1:CJ (2.56) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804262 8pv1:CK (2.56) BS01 rna ? GO:0000460 ... G0S081 37921038
    804263 8pv1:CL (2.56) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804264 8pv1:CM (2.56) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804265 8pv1:CO (2.56) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804266 8pv1:CQ (2.56) BS01 rna ? GO:0005730 ... G0S497 37921038
    804267 8pv1:CQ (2.56) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804268 8pv1:Cb (2.56) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804269 8pv1:Cb (2.56) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804270 8pv1:Cd (2.56) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804271 8pv1:Cd (2.56) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804272 8pv1:Cd (2.56) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804273 8pv1:Cd (2.56) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804274 8pv1:Ce (2.56) BS01 rna ? GO:0000027 ... G0S495 37921038
    804275 8pv1:Ce (2.56) BS02 rna ? GO:0000027 ... G0S495 37921038
    804276 8pv1:Cf (2.56) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804277 8pv1:Cf (2.56) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804278 8pv1:Cg (2.56) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804279 8pv1:Cz (2.56) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804280 8pv1:Cz (2.56) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804281 8pv1:LA (2.56) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804282 8pv1:LB (2.56) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804283 8pv1:LC (2.56) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804284 8pv1:LC (2.56) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804285 8pv1:LD (2.56) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804286 8pv1:LD (2.56) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804287 8pv1:LE (2.56) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804288 8pv1:LF (2.56) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804289 8pv1:LG (2.56) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804290 8pv1:LG (2.56) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804291 8pv1:LG (2.56) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    804292 8pv1:LJ (2.56) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804293 8pv1:LJ (2.56) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804294 8pv1:LK (2.56) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804295 8pv1:LL (2.56) BS01 rna ? GO:0003723 ... G0S992 37921038
    804296 8pv1:LL (2.56) BS02 rna ? GO:0003723 ... G0S992 37921038
    804297 8pv1:LM (2.56) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804298 8pv1:LN (2.56) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804299 8pv1:LN (2.56) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804300 8pv1:LO (2.56) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804301 8pv1:LP (2.56) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804302 8pv1:LP (2.56) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804303 8pv1:LQ (2.56) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804304 8pv1:LR (2.56) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804305 8pv1:LS (2.56) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804306 8pv1:LT (2.56) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804307 8pv1:LU (2.56) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804308 8pv1:LV (2.56) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804309 8pv1:LX (2.56) BS01 rna ? GO:0000027 ... G0S507 37921038
    804310 8pv1:LX (2.56) BS02 rna ? GO:0000027 ... G0S507 37921038
    804311 8pv1:LY (2.56) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804312 8pv1:LY (2.56) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804313 8pv1:LZ (2.56) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804314 8pv1:Lc (2.56) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804315 8pv1:Ld (2.56) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804316 8pv1:Le (2.56) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804317 8pv1:Lf (2.56) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804318 8pv1:Lg (2.56) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804319 8pv1:Lg (2.56) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804320 8pv1:Lh (2.56) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804321 8pv1:Lh (2.56) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804322 8pv1:Li (2.56) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804323 8pv1:Lj (2.56) BS01 rna ? GO:0003723 ... G0S101 37921038
    804324 8pv1:Lj (2.56) BS02 rna ? GO:0003723 ... G0S101 37921038
    804325 8pv1:Lj (2.56) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804326 8pv1:Lk (2.56) BS01 rna ? GO:0003735 ... G0SG89 37921038
    804327 8pv1:Ll (2.56) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    804328 8pv1:Ll (2.56) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    804329 8pv1:Lp (2.56) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    804330 8pv1:Lp (2.56) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    804331 8pv1:Lq (2.56) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    804332 8pv2:CC (2.63) BS01 rna ? GO:0000463 ... G0SCK6 37921038
    804333 8pv2:CF (2.63) BS01 rna ? GO:0000027 ... G0S616 37921038
    804334 8pv2:CH (2.63) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    804335 8pv2:CH (2.63) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    804336 8pv2:CH (2.63) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    804337 8pv2:CH (2.63) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    804338 8pv2:CJ (2.63) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    804339 8pv2:CJ (2.63) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    804340 8pv2:CK (2.63) BS01 rna ? GO:0000460 ... G0S081 37921038
    804341 8pv2:CL (2.63) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    804342 8pv2:CO (2.63) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    804343 8pv2:CQ (2.63) BS01 rna ? GO:0005730 ... G0S497 37921038
    804344 8pv2:CQ (2.63) BS02 ZN ? GO:0005730 ... G0S497 37921038
    804345 8pv2:Cb (2.63) BS01 rna ? GO:0003676 ... G0SB32 37921038
    804346 8pv2:Cb (2.63) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    804347 8pv2:Cd (2.63) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    804348 8pv2:Cd (2.63) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    804349 8pv2:Cd (2.63) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    804350 8pv2:Cd (2.63) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    804351 8pv2:Cf (2.63) BS01 rna ? GO:0000027 ... G0SF80 37921038
    804352 8pv2:Cf (2.63) BS02 rna ? GO:0000027 ... G0SF80 37921038
    804353 8pv2:Cg (2.63) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    804354 8pv2:Cz (2.63) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    804355 8pv2:Cz (2.63) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    804356 8pv2:LA (2.63) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    804357 8pv2:LB (2.63) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    804358 8pv2:LC (2.63) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    804359 8pv2:LC (2.63) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    804360 8pv2:LD (2.63) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    804361 8pv2:LD (2.63) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    804362 8pv2:LE (2.63) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    804363 8pv2:LF (2.63) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    804364 8pv2:LG (2.63) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    804365 8pv2:LG (2.63) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    804366 8pv2:LJ (2.63) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    804367 8pv2:LJ (2.63) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    804368 8pv2:LK (2.63) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    804369 8pv2:LL (2.63) BS01 rna ? GO:0003723 ... G0S992 37921038
    804370 8pv2:LL (2.63) BS02 rna ? GO:0003723 ... G0S992 37921038
    804371 8pv2:LM (2.63) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    804372 8pv2:LN (2.63) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    804373 8pv2:LN (2.63) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    804374 8pv2:LO (2.63) BS01 rna ? GO:0003729 ... G0SH61 37921038
    804375 8pv2:LP (2.63) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    804376 8pv2:LP (2.63) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    804377 8pv2:LQ (2.63) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    804378 8pv2:LR (2.63) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    804379 8pv2:LS (2.63) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    804380 8pv2:LT (2.63) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    804381 8pv2:LU (2.63) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    804382 8pv2:LV (2.63) BS01 rna ? GO:0003735 ... G0SI44 37921038
    804383 8pv2:LX (2.63) BS01 rna ? GO:0000027 ... G0S507 37921038
    804384 8pv2:LX (2.63) BS02 rna ? GO:0000027 ... G0S507 37921038
    804385 8pv2:LY (2.63) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    804386 8pv2:LY (2.63) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    804387 8pv2:LZ (2.63) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    804388 8pv2:Lc (2.63) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    804389 8pv2:Ld (2.63) BS01 rna ? GO:0002181 ... G0SD68 37921038
    804390 8pv2:Le (2.63) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    804391 8pv2:Lf (2.63) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    804392 8pv2:Lg (2.63) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    804393 8pv2:Lg (2.63) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    804394 8pv2:Lh (2.63) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804395 8pv2:Lh (2.63) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    804396 8pv2:Li (2.63) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    804397 8pv2:Lj (2.63) BS01 rna ? GO:0003723 ... G0S101 37921038
    804398 8pv2:Lj (2.63) BS02 rna ? GO:0003723 ... G0S101 37921038
    804399 8pv2:Lj (2.63) BS03 ZN ? GO:0003723 ... G0S101 37921038
    804400 8pv2:Lk (2.63) BS01 rna ? GO:0003735 ... G0SG89 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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