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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    803801 8ppk:J (2.98) BS01 rna ? GO:0002181 ... P46781 37802027
    803802 8ppk:K (2.98) BS01 rna ? GO:0002181 ... P46783 37802027
    803803 8ppk:L (2.98) BS01 rna ? GO:0002181 ... P62280 37802027
    803804 8ppk:M (2.98) BS01 rna ? GO:0002181 ... P25398 37802027
    803805 8ppk:N (2.98) BS01 rna ? GO:0002181 ... P62277 37802027
    803806 8ppk:O (2.98) BS01 rna ? GO:0000028 ... P62263 37802027
    803807 8ppk:P (2.98) BS01 rna ? GO:0000028 ... P62841 37802027
    803808 8ppk:Q (2.98) BS01 rna ? GO:0000462 ... P62249 37802027
    803809 8ppk:R (2.98) BS01 rna ? GO:0002181 ... P08708 37802027
    803810 8ppk:S (2.98) BS01 rna ? GO:0002181 ... P62269 37802027
    803811 8ppk:T (2.98) BS01 rna ? GO:0000028 ... P39019 37802027
    803812 8ppk:U (2.98) BS01 rna ? GO:0002181 ... P60866 37802027
    803813 8ppk:W (2.98) BS01 rna ? GO:0002181 ... P62244 37802027
    803814 8ppk:X (2.98) BS01 rna ? GO:0002181 ... P62266 37802027
    803815 8ppk:Y (2.98) BS01 rna ? GO:0002181 ... P62847 37802027
    803816 8ppk:Z (2.98) BS01 rna ? GO:0002181 ... P62851 37802027
    803817 8ppk:a (2.98) BS01 rna ? GO:0002181 ... P62854 37802027
    803818 8ppk:a (2.98) BS02 ZN ? GO:0002181 ... P62854 37802027
    803819 8ppk:b (2.98) BS01 rna ? GO:0000028 ... P42677 37802027
    803820 8ppk:c (2.98) BS01 rna ? GO:0000028 ... P62857 37802027
    803821 8ppk:d (2.98) BS01 rna ? GO:0002181 ... P62273 37802027
    803822 8ppk:d (2.98) BS02 ZN ? GO:0002181 ... P62273 37802027
    803823 8ppk:e (2.98) BS01 rna ? GO:0002181 ... P62861 37802027
    803824 8ppk:f (2.98) BS01 rna ? GO:0002181 ... P62979 37802027
    803825 8ppk:f (2.98) BS02 ZN ? GO:0002181 ... P62979 37802027
    803826 8ppk:g (2.98) BS01 rna ? GO:0001891 ... P63244 37802027
    803827 8ppk:j (2.98) BS01 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    N/A A0A088DIE1 37802027
    803828 8ppk:p (2.98) BS01 rna ? GO:0003723 ... P41567 37802027
    803829 8ppl:AA (2.65) BS01 rna ? GO:0000028 ... P08865 37802027
    803830 8ppl:AB (2.65) BS01 rna ? GO:0002181 ... P61247 37802027
    803831 8ppl:AC (2.65) BS01 rna ? GO:0002181 ... P15880 37802027
    803832 8ppl:AC (2.65) BS02 peptide ? GO:0002181 ... P15880 37802027
    803833 8ppl:AD (2.65) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37802027
    803834 8ppl:AD (2.65) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 37802027
    803835 8ppl:AE (2.65) BS01 rna ? GO:0002181 ... P62701 37802027
    803836 8ppl:AF (2.65) BS01 rna ? GO:0000028 ... P46782 37802027
    803837 8ppl:AF (2.65) BS02 MG ? GO:0000028 ... P46782 37802027
    803838 8ppl:AG (2.65) BS01 rna ? GO:0000082 ... P62753 37802027
    803839 8ppl:AH (2.65) BS01 rna ? GO:0001843 ... P62081 37802027
    803840 8ppl:AI (2.65) BS01 rna ? GO:0000462 ... P62241 37802027
    803841 8ppl:AJ (2.65) BS01 rna ? GO:0002181 ... P46781 37802027
    803842 8ppl:AK (2.65) BS01 rna ? GO:0002181 ... P46783 37802027
    803843 8ppl:AL (2.65) BS01 rna ? GO:0002181 ... P62280 37802027
    803844 8ppl:AM (2.65) BS01 rna ? GO:0002181 ... P25398 37802027
    803845 8ppl:AN (2.65) BS01 rna ? GO:0002181 ... P62277 37802027
    803846 8ppl:AO (2.65) BS01 rna ? GO:0000028 ... P62263 37802027
    803847 8ppl:AP (2.65) BS01 rna ? GO:0000028 ... P62841 37802027
    803848 8ppl:AP (2.65) BS02 rna ? GO:0000028 ... P62841 37802027
    803849 8ppl:AQ (2.65) BS01 rna ? GO:0000462 ... P62249 37802027
    803850 8ppl:AR (2.65) BS01 rna ? GO:0002181 ... P08708 37802027
    803851 8ppl:AS (2.65) BS01 rna ? GO:0002181 ... P62269 37802027
    803852 8ppl:AS (2.65) BS02 MG ? GO:0002181 ... P62269 37802027
    803853 8ppl:AS (2.65) BS03 MG ? GO:0002181 ... P62269 37802027
    803854 8ppl:AT (2.65) BS01 rna ? GO:0000028 ... P39019 37802027
    803855 8ppl:AU (2.65) BS01 rna ? GO:0002181 ... P60866 37802027
    803856 8ppl:AW (2.65) BS01 rna ? GO:0002181 ... P62244 37802027
    803857 8ppl:AX (2.65) BS01 rna ? GO:0002181 ... A0A4W2DI10 37802027
    803858 8ppl:AY (2.65) BS01 rna ? GO:0002181 ... P62847 37802027
    803859 8ppl:AZ (2.65) BS01 rna ? GO:0002181 ... P62851 37802027
    803860 8ppl:Aa (2.65) BS01 rna ? GO:0002181 ... P62854 37802027
    803861 8ppl:Aa (2.65) BS02 ZN ? GO:0002181 ... P62854 37802027
    803862 8ppl:Ab (2.65) BS01 rna ? GO:0000028 ... P42677 37802027
    803863 8ppl:Ac (2.65) BS01 rna ? GO:0000028 ... P62857 37802027
    803864 8ppl:Ad (2.65) BS01 rna ? GO:0002181 ... P62273 37802027
    803865 8ppl:Ad (2.65) BS02 ZN ? GO:0002181 ... P62273 37802027
    803866 8ppl:Ae (2.65) BS01 rna ? GO:0002181 ... P62861 37802027
    803867 8ppl:Ae (2.65) BS02 peptide ? GO:0002181 ... P62861 37802027
    803868 8ppl:Af (2.65) BS01 rna ? GO:0002181 ... P62979 37802027
    803869 8ppl:Af (2.65) BS02 ZN ? GO:0002181 ... P62979 37802027
    803870 8ppl:Ag (2.65) BS01 rna ? GO:0001891 ... P63244 37802027
    803871 8ppl:Ip (2.65) BS01 rna ? GO:0003723 ... P41567 37802027
    803872 8ppl:Iq (2.65) BS01 rna ? GO:0000049 ... P47813 37802027
    803873 8ppl:Ir (2.65) BS01 rna ? GO:0000423 ... P05198 37802027
    803874 8ppl:Is (2.65) BS01 rna ? GO:0001701 ... P20042 37802027
    803875 8ppl:Is (2.65) BS02 rna ? GO:0001701 ... P20042 37802027
    803876 8ppl:Is (2.65) BS03 ZN ? GO:0001701 ... P20042 37802027
    803877 8ppl:Is (2.65) BS04 GTP ? GO:0001701 ... P20042 37802027
    803878 8ppl:It (2.65) BS01 rna 3.6.5.3 GO:0000049 ... P41091 37802027
    803879 8ppl:It (2.65) BS02 GTP 3.6.5.3 GO:0000049 ... P41091 37802027
    803880 8ppl:It (2.65) BS03 MG 3.6.5.3 GO:0000049 ... P41091 37802027
    803881 8ppl:It (2.65) BS04 MET 3.6.5.3 GO:0000049 ... P41091 37802027
    803882 8ppl:Ix (2.65) BS01 rna ? GO:0001732 ... O15371 37802027
    803883 8ppl:Iy (2.65) BS01 rna ? GO:0001732 ... Q99613 37802027
    803884 8ppn:A (1.8) BS01 GAL ? GO:0030246 ... P17931 37658813
    803885 8ppn:A (1.8) BS02 YIO ? GO:0030246 ... P17931 37658813
    803886 8ppp:A (2.57) BS01 APC ? N/A A0A1M5ABR5 38269041
    803887 8ppp:B (2.57) BS01 APC ? N/A A0A1M5ABR5 38269041
    803888 8pps:A (2.3) BS01 MG ? N/A Q9I580 N/A
    803889 8pps:B (2.3) BS01 MG ? N/A Q9I580 N/A
    803890 8ppt:A (2.9) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803891 8ppt:A (2.9) BS02 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803892 8ppt:A (2.9) BS03 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803893 8ppt:B (2.9) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803894 8ppt:B (2.9) BS02 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803895 8ppt:B (2.9) BS03 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803896 8ppt:B (2.9) BS04 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803897 8ppt:B (2.9) BS05 MG 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803898 8ppu:A (3.02) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803899 8ppu:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803900 8ppu:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803901 8ppu:B (3.02) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803902 8ppu:B (3.02) BS02 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803903 8ppu:B (3.02) BS03 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803904 8ppu:B (3.02) BS04 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803905 8ppu:B (3.02) BS05 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803906 8ppu:B (3.02) BS06 MG 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803907 8ppv:A (3.02) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803908 8ppv:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803909 8ppv:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 38097591
    803910 8ppv:B (3.02) BS01 dna 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803911 8ppv:B (3.02) BS02 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803912 8ppv:B (3.02) BS03 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803913 8ppv:B (3.02) BS04 ZN 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803914 8ppv:B (3.02) BS05 MG 2.7.7.7
    3.1.11.1
    GO:0003677 ... Q9V2F4 38097591
    803915 8ppw:A (1.53) BS01 86F 3.1.2.-
    3.5.1.-
    3.5.1.124
    GO:0000785 ... Q99497 38239128
    803916 8ppz:A (1.85) BS01 0AN 5.2.1.8 GO:0000413 ... P62942 N/A
    803917 8ppz:B (1.85) BS01 0AN 2.7.11.1 GO:0044877 ... P42345 N/A
    803918 8pq0:A (1.48) BS01 8RX 3.1.2.-
    3.5.1.-
    3.5.1.124
    GO:0000785 ... Q99497 38239128
    803919 8pq7:A (2.1) BS01 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    803920 8pq7:A (2.1) BS02 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    803921 8pq7:C (2.1) BS01 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    803922 8pq7:C (2.1) BS02 MN 3.1.3.16 GO:0004721 ... M1C5B8 37921637
    803923 8pq9:A (1.7) BS01 9JI 2.7.10.1 GO:0004672 ... P10721 38167404
    803924 8pq9:C (1.7) BS01 9JI 2.7.10.1 GO:0004672 ... P10721 38167404
    803925 8pqa:A (1.65) BS01 98A 2.7.10.1 GO:0004672 ... P10721 38167404
    803926 8pqa:C (1.65) BS01 98A 2.7.10.1 GO:0004672 ... P10721 38167404
    803927 8pqb:A (1.87) BS01 9XO 2.7.10.1 GO:0004672 ... P10721 38167404
    803928 8pqc:A (1.77) BS01 9OO 2.7.10.1 GO:0004672 ... P10721 38167404
    803929 8pqc:B (1.77) BS01 9OO 2.7.10.1 GO:0004672 ... P10721 38167404
    803930 8pqd:A (1.5) BS01 9VV 2.7.10.1 GO:0004672 ... P10721 38167404
    803931 8pqd:B (1.5) BS01 9VV 2.7.10.1 GO:0004672 ... P10721 38167404
    803932 8pqe:A (2.0) BS01 9WU 2.7.10.1 GO:0004672 ... P10721 38167404
    803933 8pqe:B (2.0) BS01 9WU 2.7.10.1 GO:0004672 ... P10721 38167404
    803934 8pqf:A (1.9) BS01 9KI 2.7.10.1 GO:0004672 ... P10721 38167404
    803935 8pqf:C (1.9) BS01 9KI 2.7.10.1 GO:0004672 ... P10721 38167404
    803936 8pqg:A (2.4) BS01 9JI 2.7.10.1 GO:0004672 ... P10721 38167404
    803937 8pqg:C (2.4) BS01 9JI 2.7.10.1 GO:0004672 ... P10721 38167404
    803938 8pqh:A (2.5) BS01 9JI 2.7.10.1 GO:0004672 ... P16234 38167404
    803939 8pqi:A (2.6) BS01 9OO 2.7.10.1 GO:0004672 ... P16234 38167404
    803940 8pql:C (3.76) BS01 SY8 2.3.2.23 GO:0000209 ... Q712K3 38326650
    803941 8pql:K (3.76) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38326650
    803942 8pql:K (3.76) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38326650
    803943 8pql:K (3.76) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38326650
    803944 8pqn:A (3.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38153885
    803945 8pqn:A (3.8) BS02 978 1.6.5.2 GO:0000209 ... P15559 38153885
    803946 8pqn:B (3.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38153885
    803947 8pqn:B (3.8) BS02 978 1.6.5.2 GO:0000209 ... P15559 38153885
    803948 8pqn:C (3.8) BS01 978 1.6.5.2 GO:0000209 ... P15559 38153885
    803949 8pqn:C (3.8) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38153885
    803950 8pqn:D (3.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38153885
    803951 8pqo:C (2.3) BS01 GOL ? GO:0005548 ... N/A N/A
    803952 8pqo:C (2.3) BS02 GOL ? GO:0005548 ... N/A N/A
    803953 8pqo:C (2.3) BS03 F8O ? GO:0005548 ... N/A N/A
    803954 8pqo:C (2.3) BS04 FDO ? GO:0005548 ... N/A N/A
    803955 8pqo:C (2.3) BS05 MV9 ? GO:0005548 ... N/A N/A
    803956 8pqo:C (2.3) BS06 UYA ? GO:0005548 ... N/A N/A
    803957 8pqo:C (2.3) BS07 FH6 ? GO:0005548 ... N/A N/A
    803958 8pqp:A (1.709) BS01 IMH ? GO:0009159 ... K9TVX3 38449528
    803959 8pqq:A (2.23) BS01 CFB ? GO:0009159 ... K9TVX3 38449528
    803960 8pqq:A (2.23) BS02 CFB ? GO:0009159 ... K9TVX3 38449528
    803961 8pqq:B (2.23) BS01 CFB ? GO:0009159 ... K9TVX3 38449528
    803962 8pqq:B (2.23) BS02 CFB ? GO:0009159 ... K9TVX3 38449528
    803963 8pqq:C (2.23) BS01 CFB ? GO:0009159 ... K9TVX3 38449528
    803964 8pqq:C (2.23) BS02 CFB ? GO:0009159 ... K9TVX3 38449528
    803965 8pqq:D (2.23) BS01 CFB ? GO:0009159 ... K9TVX3 38449528
    803966 8pqq:D (2.23) BS02 CFB ? GO:0009159 ... K9TVX3 38449528
    803967 8pqr:A (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    803968 8pqr:A (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    803969 8pqr:B (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    803970 8pqr:B (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    803971 8pqr:C (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    803972 8pqr:C (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    803973 8pqr:D (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    803974 8pqr:D (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    803975 8pqw:A (4.2) BS01 ADP ? GO:0003723 ... Q14204 38547289
    803976 8pqw:A (4.2) BS02 MG ? GO:0003723 ... Q14204 38547289
    803977 8pqw:A (4.2) BS03 ATP ? GO:0003723 ... Q14204 38547289
    803978 8pqw:A (4.2) BS04 MG ? GO:0003723 ... Q14204 38547289
    803979 8pqw:A (4.2) BS05 ADP ? GO:0003723 ... Q14204 38547289
    803980 8pqw:A (4.2) BS06 ADP ? GO:0003723 ... Q14204 38547289
    803981 8pqx:A (3.3) BS01 ATP 3.6.4.6 GO:0000502 ... P55072 N/A
    803982 8pqx:A (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803983 8pqx:B (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803984 8pqx:B (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803985 8pqx:C (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803986 8pqx:C (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803987 8pqx:D (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803988 8pqx:D (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803989 8pqx:E (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803990 8pqx:E (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803991 8pqx:F (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803992 8pqx:F (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    803993 8pqy:A (3.8) BS01 ADP ? GO:0003723 ... Q14204 38547289
    803994 8pqy:A (3.8) BS02 MG ? GO:0003723 ... Q14204 38547289
    803995 8pqy:A (3.8) BS03 ATP ? GO:0003723 ... Q14204 38547289
    803996 8pqy:A (3.8) BS04 MG ? GO:0003723 ... Q14204 38547289
    803997 8pqy:A (3.8) BS05 ADP ? GO:0003723 ... Q14204 38547289
    803998 8pqy:A (3.8) BS06 ADP ? GO:0003723 ... Q14204 38547289
    803999 8pqz:A (5.5) BS01 ADP ? GO:0003723 ... Q14204 38547289
    804000 8pqz:A (5.5) BS02 ATP ? GO:0003723 ... Q14204 38547289

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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