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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    803401 8pml:A (2.95) BS02 MG ? N/A B4XT64 38600265
    803402 8pml:B (2.95) BS01 ATP ? N/A B4XT64 38600265
    803403 8pml:B (2.95) BS02 MG ? N/A B4XT64 38600265
    803404 8pml:C (2.95) BS01 ATP ? N/A B4XT64 38600265
    803405 8pml:C (2.95) BS02 MG ? N/A B4XT64 38600265
    803406 8pml:D (2.95) BS01 ATP ? N/A B4XT64 38600265
    803407 8pml:D (2.95) BS02 MG ? N/A B4XT64 38600265
    803408 8pml:E (2.95) BS01 ATP ? N/A B4XT64 38600265
    803409 8pml:E (2.95) BS02 MG ? N/A B4XT64 38600265
    803410 8pml:F (2.95) BS01 ATP ? N/A B4XT64 38600265
    803411 8pml:F (2.95) BS02 MG ? N/A B4XT64 38600265
    803412 8pmm:A (1.75) BS01 ATP ? N/A B4XT64 38600265
    803413 8pmm:A (1.75) BS02 MG ? N/A B4XT64 38600265
    803414 8pmm:B (1.75) BS01 ATP ? N/A B4XT64 38600265
    803415 8pmm:B (1.75) BS02 MG ? N/A B4XT64 38600265
    803416 8pmm:C (1.75) BS01 ATP ? N/A B4XT64 38600265
    803417 8pmm:C (1.75) BS02 MG ? N/A B4XT64 38600265
    803418 8pmo:A (1.24) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    803419 8pmo:B (1.24) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    803420 8pmp:A (3.43) BS01 peptide ? GO:0000184 ... Q09161 38175753
    803421 8pmp:B (3.43) BS01 peptide ? GO:0000184 ... P52298 38175753
    803422 8pmp:B (3.43) BS02 MGT ? GO:0000184 ... P52298 38175753
    803423 8pmq:2 (3.53) BS01 ZN 2.3.2.27 GO:0004842 ... Q12508 38113892
    803424 8pmq:9 (3.53) BS01 ZN 2.3.2.27 GO:0004842 ... P40492 38113892
    803425 8pmr:B (1.94) BS01 MAN 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 37934975
    803426 8pms:D (2.4) BS01 FUC 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 37934975
    803427 8pn1:A (2.4) BS01 ATP ? N/A B4XT64 38600265
    803428 8pn1:A (2.4) BS02 MG ? N/A B4XT64 38600265
    803429 8pn1:B (2.4) BS01 ATP ? N/A B4XT64 38600265
    803430 8pn1:B (2.4) BS02 MG ? N/A B4XT64 38600265
    803431 8pn1:C (2.4) BS01 ATP ? N/A B4XT64 38600265
    803432 8pn1:C (2.4) BS02 MG ? N/A B4XT64 38600265
    803433 8pn1:D (2.4) BS01 ATP ? N/A B4XT64 38600265
    803434 8pn1:D (2.4) BS02 MG ? N/A B4XT64 38600265
    803435 8pn1:E (2.4) BS01 ATP ? N/A B4XT64 38600265
    803436 8pn1:E (2.4) BS02 MG ? N/A B4XT64 38600265
    803437 8pn1:F (2.4) BS01 ATP ? N/A B4XT64 38600265
    803438 8pn1:F (2.4) BS02 MG ? N/A B4XT64 38600265
    803439 8pn2:A (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    803440 8pn2:A (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    803441 8pn2:B (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    803442 8pn2:B (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    803443 8pn2:C (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    803444 8pn2:C (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    803445 8pn2:D (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    803446 8pn2:D (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    803447 8pn2:E (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    803448 8pn2:E (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    803449 8pn2:F (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    803450 8pn2:F (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    803451 8pn3:A (1.44) BS01 peptide ? GO:0004553 ... N/A N/A
    803452 8pn3:A (1.44) BS02 ZN ? GO:0004553 ... N/A N/A
    803453 8pn3:A (1.44) BS03 ZN ? GO:0004553 ... N/A N/A
    803454 8pn3:B (1.44) BS01 peptide ? GO:0004553 ... N/A N/A
    803455 8pn5:A (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803456 8pn5:A (1.72) BS02 ZN ? GO:0004553 ... N/A N/A
    803457 8pn5:B (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803458 8pn5:B (1.72) BS02 ZN ? GO:0004553 ... N/A N/A
    803459 8pn5:C (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803460 8pn5:D (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803461 8pn5:E (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803462 8pn5:E (1.72) BS02 ZN ? GO:0004553 ... N/A N/A
    803463 8pn5:F (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803464 8pn5:F (1.72) BS02 ZN ? GO:0004553 ... N/A N/A
    803465 8pn5:G (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803466 8pn5:G (1.72) BS02 ZN ? GO:0004553 ... N/A N/A
    803467 8pn5:H (1.72) BS01 peptide ? GO:0004553 ... N/A N/A
    803468 8pn5:H (1.72) BS02 ZN ? GO:0004553 ... N/A N/A
    803469 8pn7:A (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803470 8pn7:A (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803471 8pn7:A (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803472 8pn7:B (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803473 8pn7:B (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803474 8pn7:B (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803475 8pn7:C (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803476 8pn7:C (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803477 8pn7:C (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803478 8pn7:D (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803479 8pn7:D (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803480 8pn7:D (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803481 8pn7:E (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803482 8pn7:E (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803483 8pn7:E (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803484 8pn7:F (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803485 8pn7:F (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803486 8pn7:F (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803487 8pn7:G (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803488 8pn7:H (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803489 8pn7:I (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803490 8pn7:J (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803491 8pn7:K (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803492 8pn7:L (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803493 8pn8:A (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803494 8pn8:B (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803495 8pn8:C (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803496 8pn8:D (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803497 8pn8:E (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803498 8pn8:F (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    803499 8pn8:G (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803500 8pn8:H (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803501 8pn8:I (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803502 8pn8:J (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803503 8pn8:K (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803504 8pn8:L (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    803505 8pn9:A (3.61) BS01 MAN 2.4.99.18 GO:0004576 ... P46977 38670073
    803506 8pn9:A (3.61) BS02 KZB 2.4.99.18 GO:0004576 ... P46977 38670073
    803507 8pn9:A (3.61) BS03 KZB 2.4.99.18 GO:0004576 ... P46977 38670073
    803508 8pn9:A (3.61) BS04 EGY 2.4.99.18 GO:0004576 ... P46977 38670073
    803509 8pn9:A (3.61) BS05 MN 2.4.99.18 GO:0004576 ... P46977 38670073
    803510 8pn9:A (3.61) BS06 OTP 2.4.99.18 GO:0004576 ... P46977 38670073
    803511 8pn9:A (3.61) BS07 ZXT 2.4.99.18 GO:0004576 ... P46977 38670073
    803512 8pn9:A (3.61) BS08 EGY 2.4.99.18 GO:0004576 ... P46977 38670073
    803513 8pn9:D (3.61) BS01 GLC ? GO:0001824 ... P61803 38670073
    803514 8pn9:F (3.61) BS01 MAN ? GO:0006487 ... P04844 38670073
    803515 8pn9:F (3.61) BS02 EGY ? GO:0006487 ... P04844 38670073
    803516 8pn9:G (3.61) BS01 MAN ? GO:0005789 ... P39656 38670073
    803517 8pn9:G (3.61) BS02 EGY ? GO:0005789 ... P39656 38670073
    803518 8pn9:G (3.61) BS03 KZB ? GO:0005789 ... P39656 38670073
    803519 8pn9:H (3.61) BS01 KZB ? GO:0004579 ... Q9NRP0 38670073
    803520 8pn9:H (3.61) BS02 EGY ? GO:0004579 ... Q9NRP0 38670073
    803521 8pnd:A (1.9) BS01 ZWW 2.5.1.61 GO:0004418 ... P08397 37863644
    803522 8pnd:B (1.9) BS01 ZWW 2.5.1.61 GO:0004418 ... P08397 37863644
    803523 8pnp:A (2.49) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    803524 8pnp:A (2.49) BS02 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    803525 8pnp:B (2.49) BS01 rna 2.7.7.48 GO:0000166 ... S5ME50 38316757
    803526 8pnp:C (2.49) BS01 rna ? GO:0001172 ... X5F427 38316757
    803527 8pnq:A (2.88) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    803528 8pnq:A (2.88) BS02 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    803529 8pnq:B (2.88) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    803530 8pnq:B (2.88) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    803531 8pnq:B (2.88) BS03 2KH 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    803532 8pnq:B (2.88) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    803533 8pnq:B (2.88) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    803534 8pnq:C (2.88) BS01 rna ? GO:0001172 ... X5F427 38316757
    803535 8pnq:C (2.88) BS02 rna ? GO:0001172 ... X5F427 38316757
    803536 8pnt:A (3.46) BS01 peptide ? GO:0000184 ... Q09161 38175753
    803537 8pnt:A (3.46) BS02 peptide ? GO:0000184 ... Q09161 38175753
    803538 8pnt:B (3.46) BS01 MGT ? GO:0000184 ... P52298 38175753
    803539 8pnu:A (2.12) BS01 ABN ? GO:0016020 ... O50216 38744914
    803540 8pnu:A (2.12) BS02 HEM ? GO:0016020 ... O50216 38744914
    803541 8pnu:A (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    803542 8pnu:B (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    803543 8pnu:B (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    803544 8pnu:B (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    803545 8pnu:C (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    803546 8pnu:C (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    803547 8pnu:C (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    803548 8pnu:G (2.12) BS01 ABN ? GO:0016020 ... O50216 38744914
    803549 8pnu:G (2.12) BS02 HEM ? GO:0016020 ... O50216 38744914
    803550 8pnu:G (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    803551 8pnu:H (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    803552 8pnu:H (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    803553 8pnu:H (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    803554 8pnu:I (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    803555 8pnu:I (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    803556 8pnu:I (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    803557 8pnv:A (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    803558 8pnv:A (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    803559 8pnv:B (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    803560 8pnv:B (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    803561 8pnv:C (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    803562 8pnv:C (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    803563 8pnv:G (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    803564 8pnv:G (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    803565 8pnv:H (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    803566 8pnv:H (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    803567 8pnv:I (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    803568 8pnv:I (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    803569 8pnw:A (1.7) BS01 PLP ? GO:0003824 ... H6RQF3 38003383
    803570 8pny:A (1.8) BS01 ZXN ? GO:0003824 ... H6RQF3 38003383
    803571 8pnz:A (2.51) BS01 2I0 2.7.10.1 N/A P00533 38770784
    803572 8po0:A (2.523) BS01 2I6 2.7.10.1 N/A P00533 38770784
    803573 8po1:A (2.11) BS01 2EI 2.7.10.1 N/A P00533 38770784
    803574 8po2:A (2.28) BS01 peptide 2.7.10.1 N/A P00533 38770784
    803575 8po2:A (2.28) BS02 26X 2.7.10.1 N/A P00533 38770784
    803576 8po2:B (2.28) BS01 peptide 2.7.10.1 N/A P00533 38770784
    803577 8po2:B (2.28) BS02 26X 2.7.10.1 N/A P00533 38770784
    803578 8po3:A (2.13) BS01 2II 2.7.10.1 N/A P00533 38770784
    803579 8po4:A (1.621) BS01 26X 2.7.10.1 N/A P00533 38770784
    803580 8po4:B (1.621) BS01 ATP 2.7.10.1 N/A P00533 38770784
    803581 8po4:B (1.621) BS02 MG 2.7.10.1 N/A P00533 38770784
    803582 8po5:A (2.1) BS01 MN ? N/A F9UT68 N/A
    803583 8po5:B (2.1) BS01 MN ? N/A F9UT68 N/A
    803584 8po7:A (2.26) BS01 dna 3.6.4.13 GO:0003676 ... P43329 38412313
    803585 8po7:A (2.26) BS02 ADP 3.6.4.13 GO:0003676 ... P43329 38412313
    803586 8po7:B (2.26) BS01 ADP 3.6.4.13 GO:0003676 ... P43329 38412313
    803587 8po8:A (2.52) BS01 dna 3.6.4.13 GO:0003676 ... P43329 38412313
    803588 8po8:A (2.52) BS02 dna 3.6.4.13 GO:0003676 ... P43329 38412313
    803589 8po8:A (2.52) BS03 ADP 3.6.4.13 GO:0003676 ... P43329 38412313
    803590 8po8:B (2.52) BS01 dna 3.6.4.13 GO:0003676 ... P43329 38412313
    803591 8po8:B (2.52) BS02 dna 3.6.4.13 GO:0003676 ... P43329 38412313
    803592 8po8:B (2.52) BS03 ADP 3.6.4.13 GO:0003676 ... P43329 38412313
    803593 8po8:B (2.52) BS04 MG 3.6.4.13 GO:0003676 ... P43329 38412313
    803594 8po9:A (2.2) BS01 MAN ? N/A Q24995 37729416
    803595 8po9:A (2.2) BS02 CU ? N/A Q24995 37729416
    803596 8po9:A (2.2) BS03 MG ? N/A Q24995 37729416
    803597 8po9:B (2.2) BS01 MAN ? N/A Q24995 37729416
    803598 8po9:B (2.2) BS02 CU ? N/A Q24995 37729416
    803599 8po9:B (2.2) BS03 MG ? N/A Q24995 37729416
    803600 8po9:C (2.2) BS01 MAN ? N/A Q24995 37729416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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