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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    803001 8pk0:3 (3.03) BS01 rna ? GO:0003735 ... Q9NZE8 38042949
    803002 8pk0:5 (3.03) BS01 rna ? GO:0003723 ... Q9BZE1 38042949
    803003 8pk0:6 (3.03) BS01 rna ? GO:0005515 ... Q96DV4 38042949
    803004 8pk0:6 (3.03) BS02 rna ? GO:0005515 ... Q96DV4 38042949
    803005 8pk0:8 (3.03) BS01 rna ? GO:0003723 ... Q9NQ50 38042949
    803006 8pk0:9 (3.03) BS01 rna ? GO:0003723 ... Q8IXM3 38042949
    803007 8pk0:D (3.03) BS01 rna ? GO:0003723 ... Q5T653 38042949
    803008 8pk0:E (3.03) BS01 rna ? GO:0003723 ... P09001 38042949
    803009 8pk0:F (3.03) BS01 rna ? GO:0003723 ... Q9BYD3 38042949
    803010 8pk0:H (3.03) BS01 rna ? GO:0003723 ... Q9BYD2 38042949
    803011 8pk0:I (3.03) BS01 rna ? GO:0003723 ... Q7Z7H8 38042949
    803012 8pk0:J (3.03) BS01 rna ? GO:0003723 ... Q9Y3B7 38042949
    803013 8pk0:K (3.03) BS01 rna ? GO:0003723 ... Q9BYD1 38042949
    803014 8pk0:L (3.03) BS01 rna ? GO:0003723 ... Q6P1L8 38042949
    803015 8pk0:M (3.03) BS01 rna ? GO:0003723 ... Q9P015 38042949
    803016 8pk0:N (3.03) BS01 rna ? GO:0003735 ... Q9NX20 38042949
    803017 8pk0:O (3.03) BS01 rna ? GO:0003735 ... Q9NRX2 38042949
    803018 8pk0:P (3.03) BS01 rna ? GO:0003723 ... Q9H0U6 38042949
    803019 8pk0:P (3.03) BS02 rna ? GO:0003723 ... Q9H0U6 38042949
    803020 8pk0:Q (3.03) BS01 rna ? GO:0003735 ... P49406 38042949
    803021 8pk0:R (3.03) BS01 rna ? GO:0003723 ... Q9BYC9 38042949
    803022 8pk0:S (3.03) BS01 rna ? GO:0003723 ... Q7Z2W9 38042949
    803023 8pk0:T (3.03) BS01 rna ? GO:0003723 ... Q9NWU5 38042949
    803024 8pk0:U (3.03) BS01 rna ? GO:0001650 ... Q16540 38042949
    803025 8pk0:V (3.03) BS01 rna ? GO:0003723 ... Q96A35 38042949
    803026 8pk0:W (3.03) BS01 rna ? GO:0003723 ... Q9P0M9 38042949
    803027 8pk0:X (3.03) BS01 rna ? GO:0003723 ... Q13084 38042949
    803028 8pk0:Y (3.03) BS01 rna ? GO:0003674 ... Q9HD33 38042949
    803029 8pk0:Z (3.03) BS01 rna ? GO:0003735 ... Q8TCC3 38042949
    803030 8pk0:a (3.03) BS01 rna ? GO:0003723 ... Q9Y6G3 38042949
    803031 8pk0:b (3.03) BS01 rna ? GO:0003723 ... Q8N983 38042949
    803032 8pk0:c (3.03) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 38042949
    803033 8pk0:d (3.03) BS01 rna ? GO:0003723 ... Q9BRJ2 38042949
    803034 8pk0:e (3.03) BS01 rna ? GO:0003674 ... Q9H2W6 38042949
    803035 8pk0:f (3.03) BS01 rna ? GO:0005515 ... Q96GC5 38042949
    803036 8pk0:f (3.03) BS02 rna ? GO:0005515 ... Q96GC5 38042949
    803037 8pk0:g (3.03) BS01 rna ? GO:0003735 ... Q13405 38042949
    803038 8pk0:i (3.03) BS01 rna ? GO:0003735 ... Q4U2R6 38042949
    803039 8pk0:j (3.03) BS01 rna ? GO:0003735 ... Q86TS9 38042949
    803040 8pk0:k (3.03) BS01 rna ? GO:0005515 ... Q96EL3 38042949
    803041 8pk0:l (3.03) BS01 rna ? GO:0003723 ... Q6P161 38042949
    803042 8pk0:o (3.03) BS01 rna ? GO:0003735 ... Q9BQC6 38042949
    803043 8pk0:q (3.03) BS01 rna ? GO:0005515 ... Q8TAE8 38042949
    803044 8pk0:r (3.03) BS01 rna ? GO:0003735 ... Q9NVS2 38042949
    803045 8pk0:s (3.03) BS01 rna ? GO:0003723 ... Q9NP92 38042949
    803046 8pk0:t (3.03) BS01 rna ? GO:0000287 ... A4D1E9 38042949
    803047 8pk0:t (3.03) BS02 GNP ? GO:0000287 ... A4D1E9 38042949
    803048 8pk0:u (3.03) BS01 rna ? GO:0005515 ... Q96EH3 38042949
    803049 8pk0:v (3.03) BS01 PM8 ? GO:0000266 ... L0R8F8 38042949
    803050 8pk0:x (3.03) BS01 rna 2.1.1.- GO:0001510 ... Q96CB9 38042949
    803051 8pk0:x (3.03) BS02 SAM 2.1.1.- GO:0001510 ... Q96CB9 38042949
    803052 8pk0:y (3.03) BS01 rna ? GO:0003690 ... Q7Z6M4 38042949
    803053 8pk0:z (3.03) BS01 rna ? GO:0003924 ... Q9BT17 38042949
    803054 8pk0:z (3.03) BS02 GNP ? GO:0003924 ... Q9BT17 38042949
    803055 8pk0:z (3.03) BS03 MG ? GO:0003924 ... Q9BT17 38042949
    803056 8pk8:A (2.49) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    803057 8pk8:B (2.49) BS01 8Q1 ? GO:0005515 ... Q9HD34 38627381
    803058 8pk8:D (2.49) BS01 FE2 ? GO:0005506 ... Q9H1K1 38627381
    803059 8pk9:A (2.58) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    803060 8pk9:B (2.58) BS01 8Q1 ? GO:0005515 ... Q9HD34 38627381
    803061 8pk9:D (2.58) BS01 FE2 ? GO:0005506 ... Q9H1K1 38627381
    803062 8pka:A (2.75) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    803063 8pka:B (2.75) BS01 8Q1 ? GO:0005515 ... Q9HD34 38627381
    803064 8pka:D (2.75) BS01 FE2 ? GO:0005506 ... Q9H1K1 38627381
    803065 8pkh:BC (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    803066 8pkh:BM (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    803067 8pkh:BR (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    803068 8pkh:BT (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    803069 8pkh:BX (3.35) BS01 peptide ? N/A Q9R3U6 37866476
    803070 8pki:A (2.58) BS01 dna ? GO:0000775 ... P84244 38409506
    803071 8pki:A (2.58) BS02 dna ? GO:0000775 ... P84244 38409506
    803072 8pki:B (2.58) BS01 dna ? GO:0000786 ... P62806 38409506
    803073 8pki:B (2.58) BS02 dna ? GO:0000786 ... P62806 38409506
    803074 8pki:C (2.58) BS01 dna ? GO:0000786 ... C0HKE3 38409506
    803075 8pki:C (2.58) BS02 dna ? GO:0000786 ... C0HKE3 38409506
    803076 8pki:D (2.58) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    803077 8pki:E (2.58) BS01 dna ? GO:0000775 ... P84244 38409506
    803078 8pki:E (2.58) BS02 dna ? GO:0000775 ... P84244 38409506
    803079 8pki:F (2.58) BS01 dna ? GO:0000786 ... P62806 38409506
    803080 8pki:F (2.58) BS02 dna ? GO:0000786 ... P62806 38409506
    803081 8pki:G (2.58) BS01 dna ? GO:0000786 ... C0HKE3 38409506
    803082 8pki:G (2.58) BS02 dna ? GO:0000786 ... C0HKE3 38409506
    803083 8pki:H (2.58) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    803084 8pki:H (2.58) BS02 dna ? GO:0000786 ... Q6ZWY9 38409506
    803085 8pki:K (2.58) BS01 dna ? GO:0003677 ... O00482 38409506
    803086 8pki:K (2.58) BS02 dna ? GO:0003677 ... O00482 38409506
    803087 8pki:K (2.58) BS03 ZN ? GO:0003677 ... O00482 38409506
    803088 8pkj:A (2.5) BS01 dna ? GO:0000775 ... P84244 38409506
    803089 8pkj:A (2.5) BS02 dna ? GO:0000775 ... P84244 38409506
    803090 8pkj:B (2.5) BS01 dna ? GO:0000786 ... P62806 38409506
    803091 8pkj:B (2.5) BS02 dna ? GO:0000786 ... P62806 38409506
    803092 8pkj:C (2.5) BS01 dna ? GO:0000786 ... C0HKE1 38409506
    803093 8pkj:C (2.5) BS02 dna ? GO:0000786 ... C0HKE1 38409506
    803094 8pkj:D (2.5) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    803095 8pkj:E (2.5) BS01 dna ? GO:0000775 ... P84244 38409506
    803096 8pkj:E (2.5) BS02 dna ? GO:0000775 ... P84244 38409506
    803097 8pkj:F (2.5) BS01 dna ? GO:0000786 ... P62806 38409506
    803098 8pkj:F (2.5) BS02 dna ? GO:0000786 ... P62806 38409506
    803099 8pkj:G (2.5) BS01 dna ? GO:0000786 ... C0HKE1 38409506
    803100 8pkj:G (2.5) BS02 dna ? GO:0000786 ... C0HKE1 38409506
    803101 8pkj:H (2.5) BS01 dna ? GO:0000786 ... Q6ZWY9 38409506
    803102 8pkl:0 (3.09) BS01 rna ? GO:0002181 ... P0A7Q6 38409277
    803103 8pkl:0 (3.09) BS02 ZN ? GO:0002181 ... P0A7Q6 38409277
    803104 8pkl:1 (3.09) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    803105 8pkl:2 (3.09) BS01 rna ? GO:0000027 ... P0A7M6 38409277
    803106 8pkl:3 (3.09) BS01 rna ? GO:0000027 ... P0AG51 38409277
    803107 8pkl:3 (3.09) BS02 rna ? GO:0000027 ... P0AG51 38409277
    803108 8pkl:4 (3.09) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    803109 8pkl:4 (3.09) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    803110 8pkl:4 (3.09) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    803111 8pkl:5 (3.09) BS01 rna ? GO:0000027 ... P0A7N4 38409277
    803112 8pkl:6 (3.09) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    803113 8pkl:B (3.09) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    803114 8pkl:C (3.09) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    803115 8pkl:C (3.09) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    803116 8pkl:D (3.09) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    803117 8pkl:E (3.09) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    803118 8pkl:E (3.09) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    803119 8pkl:F (3.09) BS01 rna ? GO:0002181 ... P02358 38409277
    803120 8pkl:G (3.09) BS01 rna ? GO:0000028 ... P02359 38409277
    803121 8pkl:G (3.09) BS02 rna ? GO:0000028 ... P02359 38409277
    803122 8pkl:H (3.09) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    803123 8pkl:I (3.09) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    803124 8pkl:I (3.09) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    803125 8pkl:J (3.09) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    803126 8pkl:K (3.09) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    803127 8pkl:L (3.09) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    803128 8pkl:M (3.09) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    803129 8pkl:M (3.09) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    803130 8pkl:N (3.09) BS01 rna ? GO:0000028 ... P0AG59 38409277
    803131 8pkl:O (3.09) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    803132 8pkl:O (3.09) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    803133 8pkl:P (3.09) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    803134 8pkl:Q (3.09) BS01 rna ? GO:0000028 ... P0AG63 38409277
    803135 8pkl:R (3.09) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    803136 8pkl:S (3.09) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    803137 8pkl:T (3.09) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    803138 8pkl:U (3.09) BS01 rna ? GO:0000028 ... P68679 38409277
    803139 8pkl:a (3.09) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    803140 8pkl:b (3.09) BS01 rna ? GO:0000027 ... P60422 38409277
    803141 8pkl:b (3.09) BS02 rna ? GO:0000027 ... P60422 38409277
    803142 8pkl:c (3.09) BS01 rna ? GO:0000027 ... P60438 38409277
    803143 8pkl:d (3.09) BS01 rna ? GO:0001070 ... P60723 38409277
    803144 8pkl:e (3.09) BS01 rna ? GO:0000027 ... P62399 38409277
    803145 8pkl:e (3.09) BS02 rna ? GO:0000027 ... P62399 38409277
    803146 8pkl:e (3.09) BS03 rna ? GO:0000027 ... P62399 38409277
    803147 8pkl:f (3.09) BS01 rna ? GO:0000027 ... P0AG55 38409277
    803148 8pkl:g (3.09) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    803149 8pkl:h (3.09) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    803150 8pkl:h (3.09) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    803151 8pkl:h (3.09) BS03 rna ? GO:0000027 ... P0ADY7 38409277
    803152 8pkl:i (3.09) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    803153 8pkl:j (3.09) BS01 rna ? GO:0002181 ... P0A7J3 38409277
    803154 8pkl:k (3.09) BS01 rna ? GO:0000027 ... P0A7J7 38409277
    803155 8pkl:l (3.09) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    803156 8pkl:m (3.09) BS01 rna ? GO:0002181 ... P0AA10 38409277
    803157 8pkl:n (3.09) BS01 rna ? GO:0002181 ... P0ADY3 38409277
    803158 8pkl:n (3.09) BS02 rna ? GO:0002181 ... P0ADY3 38409277
    803159 8pkl:o (3.09) BS01 rna ? GO:0002181 ... P02413 38409277
    803160 8pkl:q (3.09) BS01 rna ? GO:0000027 ... P0AG44 38409277
    803161 8pkl:r (3.09) BS01 rna ? GO:0002181 ... P0C018 38409277
    803162 8pkl:r (3.09) BS02 rna ? GO:0002181 ... P0C018 38409277
    803163 8pkl:s (3.09) BS01 rna ? GO:0000027 ... P0A7K6 38409277
    803164 8pkl:s (3.09) BS02 rna ? GO:0000027 ... P0A7K6 38409277
    803165 8pkl:t (3.09) BS01 rna ? GO:0000027 ... P0A7L3 38409277
    803166 8pkl:u (3.09) BS01 rna ? GO:0002181 ... P0AG48 38409277
    803167 8pkl:v (3.09) BS01 rna ? GO:0002181 ... P61175 38409277
    803168 8pkl:w (3.09) BS01 rna ? GO:0000027 ... P0ADZ0 38409277
    803169 8pkl:x (3.09) BS01 rna ? GO:0000027 ... P60624 38409277
    803170 8pkl:y (3.09) BS01 rna ? GO:0000027 ... P68919 38409277
    803171 8pkl:y (3.09) BS02 rna ? GO:0000027 ... P68919 38409277
    803172 8pkl:z (3.09) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    803173 8pkl:z (3.09) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    803174 8pkl:z (3.09) BS03 rna ? GO:0000027 ... P0A7L8 38409277
    803175 8pkm:R (2.9) BS01 CLR ? GO:0001586 ... P08908 N/A
    803176 8pkm:R (2.9) BS02 T7M ? GO:0001586 ... P08908 N/A
    803177 8pkm:R (2.9) BS03 ZKV ? GO:0001586 ... P08908 N/A
    803178 8pkp:K (3.2) BS01 peptide ? GO:0005515 ... Q13042 N/A
    803179 8pkp:N (3.2) BS01 ZN ? GO:0005515 ... Q9UJX6 N/A
    803180 8pkp:Q (3.2) BS01 peptide ? GO:0005515 ... Q13042 N/A
    803181 8pku:B (1.73) BS01 peptide ? N/A Q14145 37917529
    803182 8pkv:B (1.55) BS01 peptide ? N/A Q14145 37917529
    803183 8pkw:B (1.54) BS01 peptide ? N/A Q14145 37917529
    803184 8pkx:B (1.79) BS01 peptide ? N/A Q14145 37917529
    803185 8pky:A (1.4) BS01 FMN 2.7.13.3 N/A B8GAY9 38038877
    803186 8pky:B (1.4) BS01 FMN 2.7.13.3 N/A B8GAY9 38038877
    803187 8pl0:A (1.7) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803188 8pl0:A (1.7) BS02 I8G 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803189 8pl0:B (1.7) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803190 8pl1:A (2.46) BS01 FAD 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 38238498
    803191 8pl1:A (2.46) BS02 UVS 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 38238498
    803192 8pl1:A (2.46) BS03 UVS 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 38238498
    803193 8pl1:B (2.46) BS01 FAD 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 38238498
    803194 8pl1:B (2.46) BS02 UVS 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 38238498
    803195 8pl1:B (2.46) BS03 UVS 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 38238498
    803196 8pl2:A (1.88) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803197 8pl2:B (1.88) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803198 8pl2:B (1.88) BS02 ZMT 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803199 8pl3:A (1.65) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    803200 8pl3:A (1.65) BS02 ZMI 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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