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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802401 8pc7:B (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    802402 8pc7:C (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    802403 8pc7:D (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    802404 8pc8:A (1.24) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    802405 8pc8:A (1.24) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802406 8pc8:A (1.24) BS03 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    802407 8pc8:A (1.24) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802408 8pch:A (2.1) BS01 peptide 3.4.22.16 GO:0006508 ... O46427 9493267
    802409 8pcx:A (1.14) BS01 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    802410 8pcx:A (1.14) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802411 8pcx:A (1.14) BS03 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    802412 8pcx:A (1.14) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802413 8pd1:A (1.87) BS01 YHU 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    802414 8pd1:B (1.87) BS01 YHU 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    802415 8pd6:A (1.3) BS01 YCB 2.3.2.27 N/A Q8NG06 38116426
    802416 8pd6:A (1.3) BS02 MG 2.3.2.27 N/A Q8NG06 38116426
    802417 8pd8:A (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    802418 8pd8:B (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    802419 8pd9:A (3.6) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    802420 8pdd:A (1.25) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    802421 8pdd:A (1.25) BS02 MG 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    802422 8pdd:B (1.25) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    802423 8pde:A (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    802424 8pde:A (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    802425 8pde:A (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    802426 8pde:B (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    802427 8pde:B (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    802428 8pde:B (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    802429 8pde:D (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    802430 8pde:D (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    802431 8pde:D (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    802432 8pde:E (2.4) BS01 peptide ? GO:0000977 ... Q05BX2 38492719
    802433 8pde:E (2.4) BS02 dna ? GO:0000977 ... Q05BX2 38492719
    802434 8pde:E (2.4) BS03 dna ? GO:0000977 ... Q05BX2 38492719
    802435 8pdf:A (1.2) BS01 Y5Q 5.2.1.8 GO:0000413 ... P62942 37942685
    802436 8pdg:AAA (1.4) BS01 YBP 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    802437 8pdh:AAA (1.45) BS01 YBU 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    802438 8pdi:A (1.3) BS01 YBZ 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    802439 8pdj:AAA (1.4) BS01 YC5 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    802440 8pdl:A (3.1) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802441 8pdm:A (3.3) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802442 8pdn:A (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802443 8pdn:A (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802444 8pdn:B (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802445 8pdn:B (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802446 8pdn:C (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802447 8pdn:C (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802448 8pdn:D (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802449 8pdn:D (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802450 8pdn:E (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802451 8pdn:E (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802452 8pdn:F (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802453 8pdn:F (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802454 8pdn:G (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802455 8pdn:G (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802456 8pdn:H (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802457 8pdn:H (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802458 8pdn:I (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802459 8pdn:I (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802460 8pdn:J (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802461 8pdn:J (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802462 8pdn:K (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802463 8pdn:K (4.7) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802464 8pdn:L (4.7) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802465 8pdo:A (3.1) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802466 8pdo:B (3.1) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802467 8pdp:A (2.9) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802468 8pdp:A (2.9) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802469 8pdq:A (3.1) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802470 8pdq:A (3.1) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802471 8pdr:A (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802472 8pdr:A (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802473 8pdr:A (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802474 8pdr:B (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802475 8pdr:B (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802476 8pdr:B (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802477 8pdr:C (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802478 8pdr:C (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802479 8pdr:C (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802480 8pdr:D (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802481 8pdr:D (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802482 8pdr:D (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802483 8pdr:E (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802484 8pdr:E (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802485 8pdr:E (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802486 8pdr:F (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802487 8pdr:F (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802488 8pdr:F (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802489 8pdr:G (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802490 8pdr:G (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802491 8pdr:G (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802492 8pdr:H (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802493 8pdr:H (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802494 8pdr:H (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802495 8pdr:I (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802496 8pdr:I (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802497 8pdr:I (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802498 8pdr:J (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802499 8pdr:J (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802500 8pdr:J (4.0) BS03 rna ? GO:0003723 ... Q6WBA1 37993464
    802501 8pdr:K (4.0) BS01 peptide ? GO:0003723 ... Q6WBA1 37993464
    802502 8pdr:K (4.0) BS02 rna ? GO:0003723 ... Q6WBA1 37993464
    802503 8pds:A (2.9) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802504 8pds:A (2.9) BS02 peptide ? GO:0003723 ... Q6WBA1 37993464
    802505 8pds:C (2.9) BS01 rna ? GO:0003723 ... Q6WBA1 37993464
    802506 8pds:C (2.9) BS02 peptide ? GO:0003723 ... Q6WBA1 37993464
    802507 8pdt:A (1.09) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    802508 8pdt:A (1.09) BS02 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    802509 8pdt:A (1.09) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802510 8pdu:A (3.22) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    802511 8pdu:B (3.22) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    802512 8pdv:A (3.26) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    802513 8pdy:I (2.8) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802514 8pdy:I (2.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802515 8pdy:I (2.8) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802516 8pdy:J (2.8) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802517 8pdy:J (2.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802518 8pdy:J (2.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802519 8pdy:J (2.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802520 8pdy:J (2.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802521 8pdy:J (2.8) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802522 8pe3:A (1.96) BS01 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    802523 8pe3:A (1.96) BS02 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    802524 8pe3:A (1.96) BS03 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    802525 8pe3:B (1.96) BS01 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    802526 8pe3:B (1.96) BS02 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    802527 8pe3:B (1.96) BS03 rna 3.1.-.- GO:0000166 ... A0A0A7HFE6 37747760
    802528 8pe9:A (3.152) BS01 CA 2.7.10.1 N/A Q08345 37328286
    802529 8pec:A (2.66) BS01 CTJ 3.5.2.6 GO:0008658 ... Q6XEC0 38828429
    802530 8pec:C (2.66) BS01 CTJ 3.5.2.6 GO:0008658 ... Q6XEC0 38828429
    802531 8pec:D (2.66) BS01 CTJ 3.5.2.6 GO:0008658 ... Q6XEC0 38828429
    802532 8ped:A (1.1) BS01 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    802533 8ped:A (1.1) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802534 8ped:A (1.1) BS03 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    802535 8ped:A (1.1) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    802536 8pee:A (3.8) BS01 JJI 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802537 8pee:A (3.8) BS02 JIZ 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802538 8pee:A (3.8) BS03 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802539 8pee:A (3.8) BS04 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802540 8pee:A (3.8) BS05 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802541 8pee:A (3.8) BS06 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802542 8pee:A (3.8) BS07 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    802543 8peg:0 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 38409277
    802544 8peg:0 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 38409277
    802545 8peg:1 (3.3) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    802546 8peg:2 (3.3) BS01 rna ? GO:0000027 ... P0A7M6 38409277
    802547 8peg:3 (3.3) BS01 rna ? GO:0000027 ... P0AG51 38409277
    802548 8peg:3 (3.3) BS02 rna ? GO:0000027 ... P0AG51 38409277
    802549 8peg:4 (3.3) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    802550 8peg:4 (3.3) BS02 ZN ? GO:0002181 ... P0A7M9 38409277
    802551 8peg:5 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 38409277
    802552 8peg:6 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    802553 8peg:B (3.3) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    802554 8peg:C (3.3) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    802555 8peg:C (3.3) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    802556 8peg:D (3.3) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    802557 8peg:E (3.3) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    802558 8peg:E (3.3) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    802559 8peg:F (3.3) BS01 rna ? GO:0002181 ... P02358 38409277
    802560 8peg:G (3.3) BS01 rna ? GO:0000028 ... P02359 38409277
    802561 8peg:G (3.3) BS02 rna ? GO:0000028 ... P02359 38409277
    802562 8peg:H (3.3) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    802563 8peg:I (3.3) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    802564 8peg:I (3.3) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    802565 8peg:J (3.3) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    802566 8peg:K (3.3) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    802567 8peg:L (3.3) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    802568 8peg:M (3.3) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    802569 8peg:M (3.3) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    802570 8peg:N (3.3) BS01 rna ? GO:0000028 ... P0AG59 38409277
    802571 8peg:O (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    802572 8peg:O (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    802573 8peg:P (3.3) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    802574 8peg:Q (3.3) BS01 rna ? GO:0000028 ... P0AG63 38409277
    802575 8peg:R (3.3) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    802576 8peg:S (3.3) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    802577 8peg:T (3.3) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    802578 8peg:U (3.3) BS01 rna ? GO:0000028 ... P68679 38409277
    802579 8peg:U (3.3) BS02 rna ? GO:0000028 ... P68679 38409277
    802580 8peg:a (3.3) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    802581 8peg:a (3.3) BS02 rna ? GO:0000027 ... P0A7L0 38409277
    802582 8peg:b (3.3) BS01 rna ? GO:0000027 ... P60422 38409277
    802583 8peg:b (3.3) BS02 rna ? GO:0000027 ... P60422 38409277
    802584 8peg:c (3.3) BS01 rna ? GO:0000027 ... P60438 38409277
    802585 8peg:d (3.3) BS01 rna ? GO:0001070 ... P60723 38409277
    802586 8peg:e (3.3) BS01 rna ? GO:0000027 ... P62399 38409277
    802587 8peg:e (3.3) BS02 rna ? GO:0000027 ... P62399 38409277
    802588 8peg:e (3.3) BS03 rna ? GO:0000027 ... P62399 38409277
    802589 8peg:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 38409277
    802590 8peg:g (3.3) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    802591 8peg:h (3.3) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    802592 8peg:h (3.3) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    802593 8peg:h (3.3) BS03 rna ? GO:0000027 ... P0ADY7 38409277
    802594 8peg:i (3.3) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    802595 8peg:j (3.3) BS01 rna ? GO:0002181 ... P0A7J3 38409277
    802596 8peg:k (3.3) BS01 rna ? GO:0000027 ... P0A7J7 38409277
    802597 8peg:l (3.3) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    802598 8peg:m (3.3) BS01 rna ? GO:0002181 ... P0AA10 38409277
    802599 8peg:n (3.3) BS01 rna ? GO:0002181 ... P0ADY3 38409277
    802600 8peg:n (3.3) BS02 rna ? GO:0002181 ... P0ADY3 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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