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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801801 8p82:A (3.36) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    801802 8p82:A (3.36) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    801803 8p82:A (3.36) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    801804 8p82:B (3.36) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    801805 8p82:B (3.36) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    801806 8p82:B (3.36) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37478846
    801807 8p86:A (1.85) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38051605
    801808 8p87:A (1.7) BS01 X77 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38051605
    801809 8p8c:A (1.653) BS01 X5T 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 N/A
    801810 8p8g:A (1.55) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 38034976
    801811 8p8g:A (1.55) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 38034976
    801812 8p8g:A (1.55) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 38034976
    801813 8p8g:B (1.55) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 38034976
    801814 8p8g:B (1.55) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 38034976
    801815 8p8g:C (1.55) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 38034976
    801816 8p8g:C (1.55) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 38034976
    801817 8p8g:C (1.55) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 38034976
    801818 8p8g:D (1.55) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 38034976
    801819 8p8g:D (1.55) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 38034976
    801820 8p8m:JT (2.66) BS01 rna ? GO:0002181 ... Q12690 N/A
    801821 8p8m:JT (2.66) BS02 rna ? GO:0002181 ... Q12690 N/A
    801822 8p8m:JU (2.66) BS01 rna ? GO:0000027 ... P36105 N/A
    801823 8p8m:JV (2.66) BS01 rna ? GO:0002181 ... P05748 N/A
    801824 8p8m:JV (2.66) BS02 rna ? GO:0002181 ... P05748 N/A
    801825 8p8m:JW (2.66) BS01 rna ? GO:0000470 ... P26784 N/A
    801826 8p8m:LF (2.66) BS01 rna ? GO:0002181 ... P0CX45 N/A
    801827 8p8m:LG (2.66) BS01 rna ? GO:0000027 ... P14126 N/A
    801828 8p8m:LG (2.66) BS02 MG ? GO:0000027 ... P14126 N/A
    801829 8p8m:LH (2.66) BS01 rna ? GO:0002181 ... P10664 N/A
    801830 8p8m:LH (2.66) BS02 rna ? GO:0002181 ... P10664 N/A
    801831 8p8m:LI (2.66) BS01 rna ? GO:0000027 ... P26321 N/A
    801832 8p8m:LI (2.66) BS02 rna ? GO:0000027 ... P26321 N/A
    801833 8p8m:LJ (2.66) BS01 rna ? GO:0000027 ... Q02326 N/A
    801834 8p8m:LK (2.66) BS01 rna ? GO:0000463 ... P05737 N/A
    801835 8p8m:LK (2.66) BS02 rna ? GO:0000463 ... P05737 N/A
    801836 8p8m:LL (2.66) BS01 rna ? GO:0000470 ... P17076 N/A
    801837 8p8m:LL (2.66) BS02 rna ? GO:0000470 ... P17076 N/A
    801838 8p8m:LM (2.66) BS01 rna ? GO:0002181 ... P05738 N/A
    801839 8p8m:LN (2.66) BS01 rna ? GO:0000027 ... P41805 N/A
    801840 8p8m:LN (2.66) BS02 rna ? GO:0000027 ... P41805 N/A
    801841 8p8m:LO (2.66) BS01 rna ? GO:0000027 ... P0C0W9 N/A
    801842 8p8m:LO (2.66) BS02 rna ? GO:0000027 ... P0C0W9 N/A
    801843 8p8m:QO (2.66) BS01 rna ? GO:0000448 ... P05740 N/A
    801844 8p8m:QO (2.66) BS02 rna ? GO:0000448 ... P05740 N/A
    801845 8p8m:QP (2.66) BS01 rna ? GO:0002181 ... P0CX49 N/A
    801846 8p8m:QQ (2.66) BS01 rna ? GO:0002181 ... P0CX82 N/A
    801847 8p8m:QS (2.66) BS01 rna ? GO:0002181 ... P0CX23 N/A
    801848 8p8m:QS (2.66) BS02 rna ? GO:0002181 ... P0CX23 N/A
    801849 8p8m:QT (2.66) BS01 rna ? GO:0002181 ... Q02753 N/A
    801850 8p8m:QT (2.66) BS02 rna ? GO:0002181 ... Q02753 N/A
    801851 8p8m:QU (2.66) BS01 rna ? GO:0002181 ... P05749 N/A
    801852 8p8m:QV (2.66) BS01 rna ? GO:0002181 ... P0CX41 N/A
    801853 8p8m:QW (2.66) BS01 rna ? GO:0002181 ... P04449 N/A
    801854 8p8m:QX (2.66) BS01 rna ? GO:0000027 ... P04456 N/A
    801855 8p8m:QX (2.66) BS02 rna ? GO:0000027 ... P04456 N/A
    801856 8p8m:QY (2.66) BS01 rna ? GO:0002181 ... P05743 N/A
    801857 8p8m:QY (2.66) BS02 rna ? GO:0002181 ... P05743 N/A
    801858 8p8m:QZ (2.66) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    801859 8p8m:RA (2.66) BS01 rna ? GO:0002181 ... P02406 N/A
    801860 8p8m:RB (2.66) BS01 rna ? GO:0002181 ... P05747 N/A
    801861 8p8m:RC (2.66) BS01 rna ? GO:0002181 ... P14120 N/A
    801862 8p8m:RD (2.66) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    801863 8p8m:RE (2.66) BS01 rna ? GO:0002181 ... P38061 N/A
    801864 8p8m:RF (2.66) BS01 rna ? GO:0000027 ... P05744 N/A
    801865 8p8m:RG (2.66) BS01 rna ? GO:0002181 ... P87262 N/A
    801866 8p8m:RG (2.66) BS02 ZN ? GO:0002181 ... P87262 N/A
    801867 8p8m:RH (2.66) BS01 rna ? GO:0000463 ... P0CX84 N/A
    801868 8p8m:RH (2.66) BS02 rna ? GO:0000463 ... P0CX84 N/A
    801869 8p8m:RI (2.66) BS01 rna ? GO:0002181 ... P05745 N/A
    801870 8p8m:RJ (2.66) BS01 rna ? GO:0000448 ... P49166 N/A
    801871 8p8m:RJ (2.66) BS02 rna ? GO:0000448 ... P49166 N/A
    801872 8p8m:RJ (2.66) BS03 ZN ? GO:0000448 ... P49166 N/A
    801873 8p8m:RM (2.66) BS01 rna ? GO:0002181 ... P49167 N/A
    801874 8p8m:RO (2.66) BS01 rna ? GO:0000027 ... P0CH08 N/A
    801875 8p8m:RO (2.66) BS02 ZN ? GO:0000027 ... P0CH08 N/A
    801876 8p8m:RQ (2.66) BS01 rna ? GO:0002181 ... P0CX27 N/A
    801877 8p8m:RQ (2.66) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    801878 8p8m:RT (2.66) BS01 rna ? GO:0002181 ... P0CX25 N/A
    801879 8p8m:RT (2.66) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    801880 8p8n:2 (2.15) BS01 rna ? GO:0002181 ... P62892 N/A
    801881 8p8n:2 (2.15) BS02 rna ? GO:0002181 ... P62892 N/A
    801882 8p8n:JT (2.15) BS01 rna ? GO:0002181 ... Q12690 N/A
    801883 8p8n:JT (2.15) BS02 rna ? GO:0002181 ... Q12690 N/A
    801884 8p8n:JU (2.15) BS01 rna ? GO:0000027 ... P36105 N/A
    801885 8p8n:JV (2.15) BS01 rna ? GO:0002181 ... P05748 N/A
    801886 8p8n:JV (2.15) BS02 rna ? GO:0002181 ... P05748 N/A
    801887 8p8n:JW (2.15) BS01 rna ? GO:0000470 ... P26784 N/A
    801888 8p8n:LF (2.15) BS01 rna ? GO:0002181 ... P0CX45 N/A
    801889 8p8n:LG (2.15) BS01 rna ? GO:0000027 ... P14126 N/A
    801890 8p8n:LH (2.15) BS01 rna ? GO:0002181 ... P10664 N/A
    801891 8p8n:LH (2.15) BS02 rna ? GO:0002181 ... P10664 N/A
    801892 8p8n:LH (2.15) BS03 MG ? GO:0002181 ... P10664 N/A
    801893 8p8n:LI (2.15) BS01 rna ? GO:0000027 ... P26321 N/A
    801894 8p8n:LI (2.15) BS02 rna ? GO:0000027 ... P26321 N/A
    801895 8p8n:LJ (2.15) BS01 rna ? GO:0000027 ... Q02326 N/A
    801896 8p8n:LK (2.15) BS01 rna ? GO:0000463 ... P05737 N/A
    801897 8p8n:LK (2.15) BS02 rna ? GO:0000463 ... P05737 N/A
    801898 8p8n:LL (2.15) BS01 rna ? GO:0000470 ... P17076 N/A
    801899 8p8n:LL (2.15) BS02 rna ? GO:0000470 ... P17076 N/A
    801900 8p8n:LM (2.15) BS01 rna ? GO:0002181 ... P05738 N/A
    801901 8p8n:LN (2.15) BS01 rna ? GO:0000027 ... P41805 N/A
    801902 8p8n:LN (2.15) BS02 rna ? GO:0000027 ... P41805 N/A
    801903 8p8n:LN (2.15) BS03 MG ? GO:0000027 ... P41805 N/A
    801904 8p8n:LO (2.15) BS01 rna ? GO:0000027 ... P0C0W9 N/A
    801905 8p8n:LO (2.15) BS02 rna ? GO:0000027 ... P0C0W9 N/A
    801906 8p8n:QO (2.15) BS01 rna ? GO:0000448 ... P05740 N/A
    801907 8p8n:QO (2.15) BS02 rna ? GO:0000448 ... P05740 N/A
    801908 8p8n:QP (2.15) BS01 rna ? GO:0002181 ... P0CX49 N/A
    801909 8p8n:QQ (2.15) BS01 rna ? GO:0002181 ... P0CX82 N/A
    801910 8p8n:QQ (2.15) BS02 MG ? GO:0002181 ... P0CX82 N/A
    801911 8p8n:QS (2.15) BS01 rna ? GO:0002181 ... P0CX23 N/A
    801912 8p8n:QS (2.15) BS02 rna ? GO:0002181 ... P0CX23 N/A
    801913 8p8n:QT (2.15) BS01 rna ? GO:0002181 ... Q02753 N/A
    801914 8p8n:QT (2.15) BS02 rna ? GO:0002181 ... Q02753 N/A
    801915 8p8n:QU (2.15) BS01 rna ? GO:0002181 ... P05749 N/A
    801916 8p8n:QV (2.15) BS01 rna ? GO:0002181 ... P0CX41 N/A
    801917 8p8n:QW (2.15) BS01 rna ? GO:0002181 ... P04449 N/A
    801918 8p8n:QX (2.15) BS01 rna ? GO:0000027 ... P04456 N/A
    801919 8p8n:QX (2.15) BS02 rna ? GO:0000027 ... P04456 N/A
    801920 8p8n:QY (2.15) BS01 rna ? GO:0002181 ... P05743 N/A
    801921 8p8n:QY (2.15) BS02 rna ? GO:0002181 ... P05743 N/A
    801922 8p8n:QZ (2.15) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    801923 8p8n:RA (2.15) BS01 rna ? GO:0002181 ... P02406 N/A
    801924 8p8n:RB (2.15) BS01 rna ? GO:0002181 ... P05747 N/A
    801925 8p8n:RC (2.15) BS01 rna ? GO:0002181 ... P14120 N/A
    801926 8p8n:RD (2.15) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    801927 8p8n:RE (2.15) BS01 rna ? GO:0002181 ... P38061 N/A
    801928 8p8n:RF (2.15) BS01 rna ? GO:0000027 ... P05744 N/A
    801929 8p8n:RG (2.15) BS01 rna ? GO:0002181 ... P87262 N/A
    801930 8p8n:RG (2.15) BS02 ZN ? GO:0002181 ... P87262 N/A
    801931 8p8n:RH (2.15) BS01 rna ? GO:0000463 ... P0CX84 N/A
    801932 8p8n:RH (2.15) BS02 rna ? GO:0000463 ... P0CX84 N/A
    801933 8p8n:RI (2.15) BS01 rna ? GO:0002181 ... P05745 N/A
    801934 8p8n:RI (2.15) BS02 MG ? GO:0002181 ... P05745 N/A
    801935 8p8n:RJ (2.15) BS01 rna ? GO:0000448 ... P49166 N/A
    801936 8p8n:RJ (2.15) BS02 rna ? GO:0000448 ... P49166 N/A
    801937 8p8n:RJ (2.15) BS03 ZN ? GO:0000448 ... P49166 N/A
    801938 8p8n:RM (2.15) BS01 rna ? GO:0002181 ... P49167 N/A
    801939 8p8n:RO (2.15) BS01 rna ? GO:0000027 ... P0CH08 N/A
    801940 8p8n:RO (2.15) BS02 ZN ? GO:0000027 ... P0CH08 N/A
    801941 8p8n:RQ (2.15) BS01 rna ? GO:0002181 ... P0CX27 N/A
    801942 8p8n:RQ (2.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    801943 8p8n:RT (2.15) BS01 rna ? GO:0002181 ... P0CX25 N/A
    801944 8p8n:RT (2.15) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    801945 8p8p:A (1.9) BS01 X7I 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    801946 8p8u:2 (2.23) BS01 rna ? GO:0002181 ... P04650 N/A
    801947 8p8u:2 (2.23) BS02 rna ? GO:0002181 ... P04650 N/A
    801948 8p8u:JT (2.23) BS01 rna ? GO:0002181 ... Q12690 N/A
    801949 8p8u:JT (2.23) BS02 rna ? GO:0002181 ... Q12690 N/A
    801950 8p8u:JU (2.23) BS01 rna ? GO:0000027 ... P36105 N/A
    801951 8p8u:JV (2.23) BS01 rna ? GO:0002181 ... P05748 N/A
    801952 8p8u:JV (2.23) BS02 rna ? GO:0002181 ... P05748 N/A
    801953 8p8u:JW (2.23) BS01 rna ? GO:0000470 ... P26784 N/A
    801954 8p8u:LF (2.23) BS01 rna ? GO:0002181 ... P0CX45 N/A
    801955 8p8u:LG (2.23) BS01 rna ? GO:0000027 ... P14126 N/A
    801956 8p8u:LH (2.23) BS01 rna ? GO:0002181 ... P10664 N/A
    801957 8p8u:LH (2.23) BS02 rna ? GO:0002181 ... P10664 N/A
    801958 8p8u:LI (2.23) BS01 rna ? GO:0000027 ... P26321 N/A
    801959 8p8u:LI (2.23) BS02 rna ? GO:0000027 ... P26321 N/A
    801960 8p8u:LJ (2.23) BS01 rna ? GO:0000027 ... Q02326 N/A
    801961 8p8u:LK (2.23) BS01 rna ? GO:0000463 ... P05737 N/A
    801962 8p8u:LK (2.23) BS02 rna ? GO:0000463 ... P05737 N/A
    801963 8p8u:LL (2.23) BS01 rna ? GO:0000470 ... P17076 N/A
    801964 8p8u:LL (2.23) BS02 rna ? GO:0000470 ... P17076 N/A
    801965 8p8u:LM (2.23) BS01 rna ? GO:0002181 ... P05738 N/A
    801966 8p8u:LN (2.23) BS01 rna ? GO:0000027 ... P41805 N/A
    801967 8p8u:LN (2.23) BS02 rna ? GO:0000027 ... P41805 N/A
    801968 8p8u:LO (2.23) BS01 rna ? GO:0000027 ... P0C0W9 N/A
    801969 8p8u:LO (2.23) BS02 rna ? GO:0000027 ... P0C0W9 N/A
    801970 8p8u:QO (2.23) BS01 rna ? GO:0000448 ... P05740 N/A
    801971 8p8u:QO (2.23) BS02 rna ? GO:0000448 ... P05740 N/A
    801972 8p8u:QP (2.23) BS01 rna ? GO:0002181 ... P0CX49 N/A
    801973 8p8u:QQ (2.23) BS01 rna ? GO:0002181 ... P0CX82 N/A
    801974 8p8u:QS (2.23) BS01 rna ? GO:0002181 ... P0CX23 N/A
    801975 8p8u:QS (2.23) BS02 rna ? GO:0002181 ... P0CX23 N/A
    801976 8p8u:QT (2.23) BS01 rna ? GO:0002181 ... Q02753 N/A
    801977 8p8u:QT (2.23) BS02 rna ? GO:0002181 ... Q02753 N/A
    801978 8p8u:QU (2.23) BS01 rna ? GO:0002181 ... P05749 N/A
    801979 8p8u:QV (2.23) BS01 rna ? GO:0002181 ... P0CX41 N/A
    801980 8p8u:QW (2.23) BS01 rna ? GO:0002181 ... P04449 N/A
    801981 8p8u:QX (2.23) BS01 rna ? GO:0000027 ... P04456 N/A
    801982 8p8u:QX (2.23) BS02 rna ? GO:0000027 ... P04456 N/A
    801983 8p8u:QY (2.23) BS01 rna ? GO:0002181 ... P05743 N/A
    801984 8p8u:QY (2.23) BS02 rna ? GO:0002181 ... P05743 N/A
    801985 8p8u:QZ (2.23) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    801986 8p8u:RA (2.23) BS01 rna ? GO:0002181 ... P02406 N/A
    801987 8p8u:RB (2.23) BS01 rna ? GO:0002181 ... P05747 N/A
    801988 8p8u:RC (2.23) BS01 rna ? GO:0002181 ... P14120 N/A
    801989 8p8u:RD (2.23) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    801990 8p8u:RE (2.23) BS01 rna ? GO:0002181 ... P38061 N/A
    801991 8p8u:RF (2.23) BS01 rna ? GO:0000027 ... P05744 N/A
    801992 8p8u:RG (2.23) BS01 rna ? GO:0002181 ... P87262 N/A
    801993 8p8u:RG (2.23) BS02 ZN ? GO:0002181 ... P87262 N/A
    801994 8p8u:RH (2.23) BS01 rna ? GO:0000463 ... P0CX84 N/A
    801995 8p8u:RH (2.23) BS02 rna ? GO:0000463 ... P0CX84 N/A
    801996 8p8u:RI (2.23) BS01 rna ? GO:0002181 ... P05745 N/A
    801997 8p8u:RJ (2.23) BS01 rna ? GO:0000448 ... P49166 N/A
    801998 8p8u:RJ (2.23) BS02 rna ? GO:0000448 ... P49166 N/A
    801999 8p8u:RJ (2.23) BS03 ZN ? GO:0000448 ... P49166 N/A
    802000 8p8u:RM (2.23) BS01 rna ? GO:0002181 ... P49167 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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