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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801601 8p60:RL0 (14.3) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    801602 8p60:RM0 (14.3) BS01 rna ? GO:0003735 ... S7W7D2 37709902
    801603 8p60:RN0 (14.3) BS01 rna ? GO:0003735 ... S7XVZ9 37709902
    801604 8p60:RO0 (14.3) BS01 rna ? GO:0000028 ... S7W6I0 37709902
    801605 8p60:RP0 (14.3) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    801606 8p60:RQ0 (14.3) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    801607 8p60:RS0 (14.3) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    801608 8p60:RT0 (14.3) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    801609 8p60:RU0 (14.3) BS01 rna ? GO:0005840 ... S7W986 37709902
    801610 8p60:RW0 (14.3) BS01 rna ? GO:0003735 ... S7XK92 37709902
    801611 8p60:RY0 (14.3) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    801612 8p60:SA0 (14.3) BS01 rna ? GO:0000028 ... S7W8R1 37709902
    801613 8p60:SAA (14.3) BS01 rna ? GO:0003729 ... S7W9M7 37709902
    801614 8p60:SAA (14.3) BS02 ZN ? GO:0003729 ... S7W9M7 37709902
    801615 8p60:SC0 (14.3) BS01 rna ? GO:0003723 ... S7W7R5 37709902
    801616 8p60:SD0 (14.3) BS01 rna ? GO:0003723 ... S7WAW0 37709902
    801617 8p60:SDD (14.3) BS01 rna ? GO:0003735 ... S7XJB1 37709902
    801618 8p60:SDD (14.3) BS02 ZN ? GO:0003735 ... S7XJB1 37709902
    801619 8p60:SE0 (14.3) BS01 rna ? GO:0003723 ... S7XG51 37709902
    801620 8p60:SF0 (14.3) BS01 rna ? GO:0000028 ... S7W4M9 37709902
    801621 8p60:SFF (14.3) BS01 rna ? GO:0003735 ... S7W9X5 37709902
    801622 8p60:SFF (14.3) BS02 rna ? GO:0003735 ... S7W9X5 37709902
    801623 8p60:SGG (14.3) BS01 rna ? GO:0001934 ... S7XVG3 37709902
    801624 8p60:SH0 (14.3) BS01 rna ? GO:0003735 ... S7XV29 37709902
    801625 8p60:SI0 (14.3) BS01 rna ? GO:0000462 ... S7XGW2 37709902
    801626 8p60:SJ0 (14.3) BS01 rna ? GO:0003723 ... S7W8E3 37709902
    801627 8p60:SK0 (14.3) BS01 rna ? GO:0003723 ... S7XU48 37709902
    801628 8p60:SL0 (14.3) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    801629 8p60:SM0 (14.3) BS01 rna ? GO:0003735 ... S7W7D2 37709902
    801630 8p60:SN0 (14.3) BS01 rna ? GO:0003735 ... S7XVZ9 37709902
    801631 8p60:SO0 (14.3) BS01 rna ? GO:0000028 ... S7W6I0 37709902
    801632 8p60:SP0 (14.3) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    801633 8p60:SQ0 (14.3) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    801634 8p60:SS0 (14.3) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    801635 8p60:ST0 (14.3) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    801636 8p60:SU0 (14.3) BS01 rna ? GO:0005840 ... S7W986 37709902
    801637 8p60:SW0 (14.3) BS01 rna ? GO:0003735 ... S7XK92 37709902
    801638 8p60:SY0 (14.3) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    801639 8p62:2 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    801640 8p62:2 (3.9) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 38760633
    801641 8p62:2 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    801642 8p62:3 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38760633
    801643 8p62:3 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    801644 8p62:3 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    801645 8p62:4 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    801646 8p62:4 (3.9) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 38760633
    801647 8p62:4 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    801648 8p62:5 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38760633
    801649 8p62:5 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    801650 8p62:5 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    801651 8p62:6 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38760633
    801652 8p62:6 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    801653 8p62:6 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    801654 8p62:6 (3.9) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 38760633
    801655 8p62:7 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    801656 8p62:7 (3.9) BS02 ZN 3.6.4.12 GO:0000727 ... P38132 38760633
    801657 8p62:G (3.9) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0000278 ... P21951 38760633
    801658 8p62:G (3.9) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0000278 ... P21951 38760633
    801659 8p63:2 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29469 38760633
    801660 8p63:2 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    801661 8p63:2 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P29469 38760633
    801662 8p63:2 (3.7) BS04 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    801663 8p63:3 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38760633
    801664 8p63:3 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    801665 8p63:4 (3.7) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 38760633
    801666 8p63:4 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    801667 8p63:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    801668 8p63:5 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38760633
    801669 8p63:5 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    801670 8p63:5 (3.7) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    801671 8p63:6 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38760633
    801672 8p63:6 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    801673 8p63:6 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    801674 8p63:6 (3.7) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 38760633
    801675 8p63:7 (3.7) BS01 ZN 3.6.4.12 GO:0000727 ... P38132 38760633
    801676 8p63:7 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    801677 8p63:G (3.7) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0000278 ... P21951 38760633
    801678 8p63:G (3.7) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0000278 ... P21951 38760633
    801679 8p64:A (3.312) BS01 X1Q ? N/A Q9NZQ7 38665826
    801680 8p64:B (3.312) BS01 X1Q ? N/A Q9NZQ7 38665826
    801681 8p66:B (-1.00) BS01 ZN ? N/A A0A7M2ZW85 37827289
    801682 8p67:A (1.37) BS01 XYP 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801683 8p67:A (1.37) BS02 XYP 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801684 8p67:A (1.37) BS03 XYP 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801685 8p67:A (1.37) BS04 GCV 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801686 8p67:B (1.37) BS01 XYP 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801687 8p67:B (1.37) BS02 XYP 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801688 8p67:B (1.37) BS03 XYP 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801689 8p67:B (1.37) BS04 GCV 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    801690 8p6f:A (2.0) BS01 MG ? GO:0000160 ... A0A1M5SPD1 38503809
    801691 8p6f:A (2.0) BS02 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    801692 8p6f:A (2.0) BS03 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    801693 8p6f:B (2.0) BS01 MG ? GO:0000160 ... A0A1M5SPD1 38503809
    801694 8p6f:B (2.0) BS02 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    801695 8p6f:B (2.0) BS03 ZN ? GO:0000160 ... A0A1M5SPD1 38503809
    801696 8p6j:BBB (2.324) BS01 peptide ? N/A A0A0H2UWN1 N/A
    801697 8p6j:BBB (2.324) BS02 peptide ? N/A A0A0H2UWN1 N/A
    801698 8p6j:CCC (2.324) BS01 peptide ? N/A A0A0H2UWN1 N/A
    801699 8p6j:CCC (2.324) BS02 peptide ? N/A A0A0H2UWN1 N/A
    801700 8p6j:CCC (2.324) BS03 peptide ? N/A A0A0H2UWN1 N/A
    801701 8p6j:FFF (2.324) BS01 peptide ? N/A A0A0H2UWN1 N/A
    801702 8p6j:FFF (2.324) BS02 peptide ? N/A A0A0H2UWN1 N/A
    801703 8p6o:A (1.05) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    801704 8p6o:A (1.05) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    801705 8p6o:A (1.05) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    801706 8p6o:A (1.05) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    801707 8p6u:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 38358125
    801708 8p6v:J (1.9) BS01 I74 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801709 8p6w:J (1.9) BS01 X2H 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801710 8p6x:J (1.9) BS01 NS9 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801711 8p6y:J (1.9) BS01 AGS 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801712 8p6y:J (1.9) BS02 MG 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801713 8p6z:J (2.1) BS01 X4L 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801714 8p70:J (2.0) BS01 X4Q 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801715 8p71:J (2.0) BS01 X4F 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801716 8p72:J (1.9) BS01 X2Z 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801717 8p73:J (2.0) BS01 X50 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801718 8p73:J (2.0) BS02 X58 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801719 8p74:J (2.2) BS01 X3Z 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801720 8p75:J (2.0) BS01 X3Z 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801721 8p76:J (2.0) BS01 X1W 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801722 8p77:J (1.8) BS01 I73 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801723 8p78:J (1.9) BS01 1QK 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801724 8p7b:A (2.42) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801725 8p7b:A (2.42) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801726 8p7b:B (2.42) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801727 8p7b:B (2.42) BS02 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801728 8p7b:D (2.42) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801729 8p7b:D (2.42) BS02 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801730 8p7c:A (3.7) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801731 8p7c:A (3.7) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801732 8p7c:B (3.7) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801733 8p7c:C (3.7) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801734 8p7c:C (3.7) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801735 8p7c:D (3.7) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801736 8p7d:A (4.2) BS01 rna 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801737 8p7d:A (4.2) BS02 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    801738 8p7d:B (4.2) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801739 8p7d:D (4.2) BS01 rna 6.1.1.11 GO:0000049 ... P49591 38918637
    801740 8p7f:A (2.0) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801741 8p7h:A (1.774) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801742 8p7h:A (1.774) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801743 8p7h:A (1.774) BS03 X3B 3.1.8.1 GO:0004063 ... P0A434 37860961
    801744 8p7i:A (1.7) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801745 8p7i:A (1.7) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801746 8p7i:A (1.7) BS03 X3E 3.1.8.1 GO:0004063 ... P0A434 37860961
    801747 8p7i:B (1.7) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801748 8p7i:B (1.7) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801749 8p7i:B (1.7) BS03 X3E 3.1.8.1 GO:0004063 ... P0A434 37860961
    801750 8p7j:A (2.4) BS01 X3K 2.7.12.2 GO:0004672 ... P52564 N/A
    801751 8p7j:B (2.4) BS01 X3K 2.7.12.2 GO:0004672 ... P52564 N/A
    801752 8p7k:A (1.929) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801753 8p7k:A (1.929) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801754 8p7k:A (1.929) BS03 E5N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801755 8p7k:B (1.929) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801756 8p7k:B (1.929) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801757 8p7k:B (1.929) BS03 E5N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801758 8p7l:J (2.1) BS01 peptide 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801759 8p7l:J (2.1) BS02 WD9 2.7.11.22
    2.7.11.23
    GO:0000307 ... P50613 38480681
    801760 8p7m:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801761 8p7m:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801762 8p7m:A (1.85) BS03 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    801763 8p7n:A (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801764 8p7n:A (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801765 8p7n:B (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801766 8p7n:B (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801767 8p7n:C (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801768 8p7n:C (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801769 8p7n:D (3.2) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801770 8p7n:D (3.2) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801771 8p7o:A (1.7) BS01 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    801772 8p7o:A (1.7) BS02 X5L 1.21.3.1 GO:0005737 ... P05326 N/A
    801773 8p7p:A (1.8) BS01 X2R 1.21.3.1 GO:0005737 ... P05326 N/A
    801774 8p7p:A (1.8) BS02 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    801775 8p7q:A (1.77) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801776 8p7q:A (1.77) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801777 8p7q:A (1.77) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801778 8p7q:A (1.77) BS04 UCJ 3.1.8.1 GO:0004063 ... P0A434 37860961
    801779 8p7r:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801780 8p7r:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801781 8p7r:A (1.85) BS03 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    801782 8p7r:A (1.85) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801783 8p7s:A (1.77) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801784 8p7s:A (1.77) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801785 8p7s:A (1.77) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801786 8p7s:A (1.77) BS04 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    801787 8p7t:A (1.8) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801788 8p7t:A (1.8) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801789 8p7t:A (1.8) BS03 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    801790 8p7t:A (1.8) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801791 8p7t:A (1.8) BS05 VX 3.1.8.1 GO:0004063 ... P0A434 37860961
    801792 8p7u:A (1.38) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801793 8p7u:A (1.38) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801794 8p7u:A (1.38) BS03 X3T 3.1.8.1 GO:0004063 ... P0A434 37860961
    801795 8p7u:A (1.38) BS04 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801796 8p7v:A (1.737) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801797 8p7v:A (1.737) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 37860961
    801798 8p7v:A (1.737) BS03 E8N 3.1.8.1 GO:0004063 ... P0A434 37860961
    801799 8p7v:A (1.737) BS04 GB 3.1.8.1 GO:0004063 ... P0A434 37860961
    801800 8p81:A (2.68) BS01 RMF 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 38016516

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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