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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800601 8p2f:E (2.44) BS05 GDP ? GO:0003746 ... Q2G0N1 38902339
    800602 8p2f:E (2.44) BS06 WUX ? GO:0003746 ... Q2G0N1 38902339
    800603 8p2f:G (2.44) BS01 rna ? GO:0002181 ... P60430 38902339
    800604 8p2f:H (2.44) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    800605 8p2f:I (2.44) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    800606 8p2f:J (2.44) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    800607 8p2f:J (2.44) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    800608 8p2f:J (2.44) BS03 rna ? GO:0000049 ... Q2FW18 38902339
    800609 8p2f:K (2.44) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    800610 8p2f:M (2.44) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    800611 8p2f:N (2.44) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    800612 8p2f:N (2.44) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    800613 8p2f:O (2.44) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    800614 8p2f:P (2.44) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    800615 8p2f:P (2.44) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    800616 8p2f:Q (2.44) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    800617 8p2f:R (2.44) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    800618 8p2f:R (2.44) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    800619 8p2f:S (2.44) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    800620 8p2f:S (2.44) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    800621 8p2f:T (2.44) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    800622 8p2f:U (2.44) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    800623 8p2f:V (2.44) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    800624 8p2f:W (2.44) BS01 rna ? GO:0000027 ... Q2FW08 38902339
    800625 8p2f:X (2.44) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    800626 8p2f:Y (2.44) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    800627 8p2f:Z (2.44) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    800628 8p2f:Z (2.44) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    800629 8p2f:c (2.44) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    800630 8p2f:d (2.44) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    800631 8p2f:e (2.44) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    800632 8p2f:f (2.44) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    800633 8p2f:g (2.44) BS01 rna ? GO:0003735 ... Q2G113 38902339
    800634 8p2f:h (2.44) BS01 rna ? GO:0000028 ... P48940 38902339
    800635 8p2f:h (2.44) BS02 rna ? GO:0000028 ... P48940 38902339
    800636 8p2f:i (2.44) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    800637 8p2f:j (2.44) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    800638 8p2f:j (2.44) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    800639 8p2f:k (2.44) BS01 rna ? GO:0000049 ... A0A0D1JTN2 38902339
    800640 8p2f:l (2.44) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    800641 8p2f:m (2.44) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    800642 8p2f:n (2.44) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    800643 8p2f:o (2.44) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    800644 8p2f:o (2.44) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    800645 8p2f:p (2.44) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    800646 8p2f:p (2.44) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    800647 8p2f:q (2.44) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    800648 8p2f:r (2.44) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    800649 8p2f:s (2.44) BS01 rna ? GO:0003735 ... Q2G111 38902339
    800650 8p2f:t (2.44) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    800651 8p2f:u (2.44) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    800652 8p2g:1 (2.02) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    800653 8p2g:2 (2.02) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    800654 8p2g:3 (2.02) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    800655 8p2g:3 (2.02) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    800656 8p2g:4 (2.02) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    800657 8p2g:5 (2.02) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    800658 8p2g:5 (2.02) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    800659 8p2g:6 (2.02) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    800660 8p2g:7 (2.02) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    800661 8p2g:8 (2.02) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    800662 8p2g:9 (2.02) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    800663 8p2g:9 (2.02) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    800664 8p2g:E (2.02) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    800665 8p2g:E (2.02) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    800666 8p2g:E (2.02) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    800667 8p2g:E (2.02) BS04 WUX ? GO:0003746 ... Q2G0N1 38902339
    800668 8p2g:G (2.02) BS01 rna ? GO:0002181 ... P60430 38902339
    800669 8p2g:H (2.02) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    800670 8p2g:I (2.02) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    800671 8p2g:J (2.02) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    800672 8p2g:J (2.02) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    800673 8p2g:K (2.02) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    800674 8p2g:M (2.02) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    800675 8p2g:N (2.02) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    800676 8p2g:N (2.02) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    800677 8p2g:O (2.02) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    800678 8p2g:P (2.02) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    800679 8p2g:P (2.02) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    800680 8p2g:Q (2.02) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    800681 8p2g:R (2.02) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    800682 8p2g:R (2.02) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    800683 8p2g:S (2.02) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    800684 8p2g:S (2.02) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    800685 8p2g:T (2.02) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    800686 8p2g:U (2.02) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    800687 8p2g:V (2.02) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    800688 8p2g:W (2.02) BS01 rna ? GO:0000027 ... Q2FW08 38902339
    800689 8p2g:X (2.02) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    800690 8p2g:Y (2.02) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    800691 8p2g:Z (2.02) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    800692 8p2g:Z (2.02) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    800693 8p2g:c (2.02) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    800694 8p2g:d (2.02) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    800695 8p2g:e (2.02) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    800696 8p2g:f (2.02) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    800697 8p2g:g (2.02) BS01 rna ? GO:0003735 ... Q2G113 38902339
    800698 8p2g:h (2.02) BS01 rna ? GO:0000028 ... P48940 38902339
    800699 8p2g:i (2.02) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    800700 8p2g:j (2.02) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    800701 8p2g:j (2.02) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    800702 8p2g:k (2.02) BS01 rna ? GO:0000049 ... A5IV35 38902339
    800703 8p2g:l (2.02) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    800704 8p2g:m (2.02) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    800705 8p2g:n (2.02) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    800706 8p2g:o (2.02) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    800707 8p2g:o (2.02) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    800708 8p2g:p (2.02) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    800709 8p2g:p (2.02) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    800710 8p2g:q (2.02) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    800711 8p2g:r (2.02) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    800712 8p2g:s (2.02) BS01 rna ? GO:0003735 ... Q2G111 38902339
    800713 8p2g:t (2.02) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    800714 8p2g:u (2.02) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    800715 8p2h:1 (2.49) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    800716 8p2h:2 (2.49) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    800717 8p2h:3 (2.49) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    800718 8p2h:3 (2.49) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    800719 8p2h:4 (2.49) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    800720 8p2h:5 (2.49) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    800721 8p2h:5 (2.49) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    800722 8p2h:6 (2.49) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    800723 8p2h:7 (2.49) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    800724 8p2h:8 (2.49) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    800725 8p2h:9 (2.49) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    800726 8p2h:9 (2.49) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    800727 8p2h:E (2.49) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    800728 8p2h:E (2.49) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    800729 8p2h:E (2.49) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    800730 8p2h:E (2.49) BS04 FUA ? GO:0003746 ... Q2G0N1 38902339
    800731 8p2h:G (2.49) BS01 rna ? GO:0002181 ... P60430 38902339
    800732 8p2h:G (2.49) BS02 MG ? GO:0002181 ... P60430 38902339
    800733 8p2h:H (2.49) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    800734 8p2h:I (2.49) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    800735 8p2h:J (2.49) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    800736 8p2h:J (2.49) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    800737 8p2h:K (2.49) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    800738 8p2h:M (2.49) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    800739 8p2h:N (2.49) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    800740 8p2h:N (2.49) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    800741 8p2h:O (2.49) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    800742 8p2h:P (2.49) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    800743 8p2h:P (2.49) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    800744 8p2h:Q (2.49) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    800745 8p2h:R (2.49) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    800746 8p2h:R (2.49) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    800747 8p2h:S (2.49) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    800748 8p2h:S (2.49) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    800749 8p2h:T (2.49) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    800750 8p2h:U (2.49) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    800751 8p2h:V (2.49) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    800752 8p2h:W (2.49) BS01 rna ? GO:0000027 ... Q2FW08 38902339
    800753 8p2h:X (2.49) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    800754 8p2h:Y (2.49) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    800755 8p2h:Z (2.49) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    800756 8p2h:Z (2.49) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    800757 8p2h:c (2.49) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    800758 8p2h:d (2.49) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    800759 8p2h:e (2.49) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    800760 8p2h:f (2.49) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    800761 8p2h:g (2.49) BS01 rna ? GO:0003735 ... Q2G113 38902339
    800762 8p2h:h (2.49) BS01 rna ? GO:0000028 ... P48940 38902339
    800763 8p2h:i (2.49) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    800764 8p2h:j (2.49) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    800765 8p2h:j (2.49) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    800766 8p2h:k (2.49) BS01 rna ? GO:0000049 ... A5IV35 38902339
    800767 8p2h:l (2.49) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    800768 8p2h:m (2.49) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    800769 8p2h:n (2.49) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    800770 8p2h:o (2.49) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    800771 8p2h:o (2.49) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    800772 8p2h:p (2.49) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    800773 8p2h:p (2.49) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    800774 8p2h:q (2.49) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    800775 8p2h:r (2.49) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    800776 8p2h:s (2.49) BS01 rna ? GO:0003735 ... Q2G111 38902339
    800777 8p2h:t (2.49) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    800778 8p2h:u (2.49) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    800779 8p2i:A (3.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    800780 8p2i:A (3.4) BS02 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    800781 8p2i:A (3.4) BS03 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    800782 8p2i:B (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    800783 8p2i:I (3.4) BS01 ZN ? GO:0005515 ... Q8U440 38709902
    800784 8p2i:N (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    800785 8p2i:P (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... Q8TZI3 38709902
    800786 8p2j:A (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800787 8p2j:B (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800788 8p2j:C (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800789 8p2j:C (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    800790 8p2j:D (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800791 8p2j:E (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800792 8p2j:F (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800793 8p2j:F (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    800794 8p2j:G (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800795 8p2j:G (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    800796 8p2j:H (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800797 8p2j:I (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    800798 8p2k:AA (2.9) BS01 rna ? GO:0000028 ... G1TZ76 37347872
    800799 8p2k:AB (2.9) BS01 rna ? GO:0000028 ... G1TIB4 37347872
    800800 8p2k:AC (2.9) BS01 rna ? GO:0003723 ... G1SK22 37347872
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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