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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800401 8p17:v (2.78) BS01 rna ? GO:0000028 ... P0AG63 N/A
    800402 8p17:w (2.78) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    800403 8p17:x (2.78) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    800404 8p17:y (2.78) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    800405 8p17:z (2.78) BS01 rna ? GO:0000028 ... P68679 N/A
    800406 8p17:z (2.78) BS02 rna ? GO:0000028 ... P68679 N/A
    800407 8p18:6 (2.77) BS01 rna ? GO:0005737 ... P07012 N/A
    800408 8p18:6 (2.77) BS02 rna ? GO:0005737 ... P07012 N/A
    800409 8p18:6 (2.77) BS03 rna ? GO:0005737 ... P07012 N/A
    800410 8p18:6 (2.77) BS04 rna ? GO:0005737 ... P07012 N/A
    800411 8p18:B (2.77) BS01 rna ? GO:0000027 ... P60422 N/A
    800412 8p18:C (2.77) BS01 rna ? GO:0000027 ... P60438 N/A
    800413 8p18:D (2.77) BS01 rna ? GO:0001070 ... P60723 N/A
    800414 8p18:E (2.77) BS01 rna ? GO:0000027 ... P62399 N/A
    800415 8p18:E (2.77) BS02 rna ? GO:0000027 ... P62399 N/A
    800416 8p18:E (2.77) BS03 rna ? GO:0000027 ... P62399 N/A
    800417 8p18:F (2.77) BS01 rna ? GO:0000027 ... P0AG55 N/A
    800418 8p18:G (2.77) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    800419 8p18:I (2.77) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    800420 8p18:J (2.77) BS01 rna ? GO:0002181 ... P0AA10 N/A
    800421 8p18:K (2.77) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    800422 8p18:K (2.77) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    800423 8p18:L (2.77) BS01 rna ? GO:0002181 ... P02413 N/A
    800424 8p18:M (2.77) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    800425 8p18:M (2.77) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    800426 8p18:N (2.77) BS01 rna ? GO:0000027 ... P0AG44 N/A
    800427 8p18:O (2.77) BS01 rna ? GO:0002181 ... P0C018 N/A
    800428 8p18:O (2.77) BS02 rna ? GO:0002181 ... P0C018 N/A
    800429 8p18:P (2.77) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    800430 8p18:P (2.77) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    800431 8p18:Q (2.77) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    800432 8p18:R (2.77) BS01 rna ? GO:0002181 ... P0AG48 N/A
    800433 8p18:S (2.77) BS01 rna ? GO:0002181 ... P61175 N/A
    800434 8p18:T (2.77) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    800435 8p18:U (2.77) BS01 rna ? GO:0000027 ... P60624 N/A
    800436 8p18:V (2.77) BS01 rna ? GO:0000027 ... P68919 N/A
    800437 8p18:V (2.77) BS02 rna ? GO:0000027 ... P68919 N/A
    800438 8p18:W (2.77) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    800439 8p18:W (2.77) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    800440 8p18:X (2.77) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    800441 8p18:Y (2.77) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    800442 8p18:Z (2.77) BS01 rna ? GO:0000027 ... P0AG51 N/A
    800443 8p18:Z (2.77) BS02 rna ? GO:0000027 ... P0AG51 N/A
    800444 8p18:a (2.77) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    800445 8p18:a (2.77) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    800446 8p18:a (2.77) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    800447 8p18:b (2.77) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    800448 8p18:c (2.77) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    800449 8p18:d (2.77) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    800450 8p18:e (2.77) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    800451 8p18:f (2.77) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    800452 8p18:f (2.77) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    800453 8p18:g (2.77) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    800454 8p18:h (2.77) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    800455 8p18:i (2.77) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    800456 8p18:j (2.77) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    800457 8p18:j (2.77) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    800458 8p18:k (2.77) BS01 rna ? GO:0002181 ... P02358 N/A
    800459 8p18:l (2.77) BS01 rna ? GO:0000028 ... P02359 N/A
    800460 8p18:l (2.77) BS02 rna ? GO:0000028 ... P02359 N/A
    800461 8p18:m (2.77) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    800462 8p18:n (2.77) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    800463 8p18:n (2.77) BS02 rna ? GO:0000049 ... P0A7X3 N/A
    800464 8p18:o (2.77) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    800465 8p18:p (2.77) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    800466 8p18:q (2.77) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    800467 8p18:r (2.77) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    800468 8p18:r (2.77) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    800469 8p18:s (2.77) BS01 rna ? GO:0000028 ... P0AG59 N/A
    800470 8p18:t (2.77) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    800471 8p18:t (2.77) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    800472 8p18:u (2.77) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    800473 8p18:v (2.77) BS01 rna ? GO:0000028 ... P0AG63 N/A
    800474 8p18:w (2.77) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    800475 8p18:x (2.77) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    800476 8p18:y (2.77) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    800477 8p18:z (2.77) BS01 rna ? GO:0000028 ... P68679 N/A
    800478 8p18:z (2.77) BS02 rna ? GO:0000028 ... P68679 N/A
    800479 8p1c:A (1.58) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    800480 8p1d:A (1.6) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    800481 8p1e:D (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    800482 8p1e:E (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    800483 8p1e:I (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    800484 8p1e:J (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    800485 8p1f:A (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    800486 8p1f:E (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    800487 8p1f:G (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    800488 8p1f:H (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    800489 8p1f:I (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    800490 8p1h:A (1.95) BS01 AZI ? N/A P36544
    P63104    		 37804592
    800491 8p1i:A (2.97) BS01 WQW ? GO:0005886 ... A0A332Z023 38177534
    800492 8p1i:B (2.97) BS01 WR6 ? GO:0005886 ... A0A332Z023 38177534
    800493 8p1m:A (3.23) BS01 rna 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    800494 8p1m:A (3.23) BS02 ATP 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    800495 8p1m:A (3.23) BS03 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    800496 8p1m:A (3.23) BS04 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    800497 8p1n:A (2.79) BS01 rna 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    800498 8p1o:A (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    800499 8p1o:B (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    800500 8p1p:A (2.76) BS01 WF0 3.4.19.12 N/A Q96RU2 N/A
    800501 8p1p:B (2.76) BS01 WF0 3.4.19.12 N/A Q96RU2 N/A
    800502 8p1q:A (2.79) BS01 WFT 3.4.19.12 N/A Q96RU2 N/A
    800503 8p1q:B (2.79) BS01 WFT 3.4.19.12 N/A Q96RU2 N/A
    800504 8p1t:AAA (1.442) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    800505 8p1t:AAA (1.442) BS02 WJL 2.5.1.6 GO:0004478 ... P31153 37591318
    800506 8p1v:AAA (1.54) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    800507 8p1v:AAA (1.54) BS02 WIV 2.5.1.6 GO:0004478 ... P31153 37591318
    800508 8p1w:AAA (1.15) BS01 MTA 2.5.1.6 GO:0004478 ... P31153 37591318
    800509 8p1w:AAA (1.15) BS02 WK5 2.5.1.6 GO:0004478 ... P31153 37591318
    800510 8p22:A (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800511 8p22:A (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800512 8p22:B (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800513 8p22:B (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800514 8p22:C (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800515 8p22:C (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800516 8p22:D (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800517 8p22:E (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800518 8p22:E (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800519 8p22:F (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800520 8p22:G (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800521 8p22:H (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800522 8p22:H (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800523 8p22:I (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800524 8p22:I (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800525 8p22:J (2.2) BS01 WNO ? GO:0004888 ... P58154 N/A
    800526 8p22:J (2.2) BS02 WNO ? GO:0004888 ... P58154 N/A
    800527 8p23:A (3.17) BS01 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800528 8p23:A (3.17) BS02 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800529 8p23:B (3.17) BS01 CTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800530 8p23:B (3.17) BS02 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800531 8p23:B (3.17) BS03 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800532 8p23:B (3.17) BS04 ZN 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800533 8p27:A (2.73) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800534 8p27:A (2.73) BS02 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800535 8p27:A (2.73) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800536 8p27:B (2.73) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800537 8p27:B (2.73) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800538 8p27:B (2.73) BS03 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800539 8p28:A (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800540 8p28:A (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800541 8p28:A (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800542 8p28:A (2.77) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800543 8p28:A (2.77) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800544 8p28:B (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800545 8p28:B (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800546 8p28:B (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800547 8p28:B (2.77) BS04 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800548 8p28:B (2.77) BS05 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800549 8p28:C (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800550 8p28:C (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800551 8p28:C (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800552 8p28:C (2.77) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800553 8p28:C (2.77) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800554 8p28:D (2.77) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800555 8p28:D (2.77) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800556 8p28:D (2.77) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800557 8p29:A (2.06) BS01 WJC ? N/A Q15562 37770003
    800558 8p2a:A (2.0) BS01 FMN ? GO:0010181 ... A0A0K8PVQ4 37455753
    800559 8p2c:A (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800560 8p2c:A (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800561 8p2c:A (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800562 8p2c:A (2.59) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800563 8p2c:A (2.59) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800564 8p2c:B (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800565 8p2c:B (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800566 8p2c:B (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800567 8p2c:B (2.59) BS04 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800568 8p2c:B (2.59) BS05 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800569 8p2c:C (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800570 8p2c:C (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800571 8p2c:C (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800572 8p2c:C (2.59) BS04 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800573 8p2c:C (2.59) BS05 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800574 8p2c:D (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800575 8p2c:D (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800576 8p2c:D (2.59) BS03 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800577 8p2c:D (2.59) BS04 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800578 8p2c:D (2.59) BS05 MG 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800579 8p2d:A (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800580 8p2d:A (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800581 8p2d:B (2.59) BS01 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800582 8p2d:B (2.59) BS02 DTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    800583 8p2f:1 (2.44) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    800584 8p2f:2 (2.44) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    800585 8p2f:3 (2.44) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    800586 8p2f:3 (2.44) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    800587 8p2f:4 (2.44) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    800588 8p2f:4 (2.44) BS02 rna ? GO:0003735 ... Q2FWD8 38902339
    800589 8p2f:5 (2.44) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    800590 8p2f:5 (2.44) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    800591 8p2f:6 (2.44) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    800592 8p2f:7 (2.44) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    800593 8p2f:8 (2.44) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    800594 8p2f:8 (2.44) BS02 MG ? GO:0003735 ... Q2FXQ0 38902339
    800595 8p2f:9 (2.44) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    800596 8p2f:9 (2.44) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    800597 8p2f:E (2.44) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    800598 8p2f:E (2.44) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    800599 8p2f:E (2.44) BS03 rna ? GO:0003746 ... Q2G0N1 38902339
    800600 8p2f:E (2.44) BS04 rna ? GO:0003746 ... Q2G0N1 38902339
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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