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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800201 8p0j:A (2.39) BS04 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    800202 8p0j:A (2.39) BS05 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    800203 8p0j:B (2.39) BS01 dna 2.7.7.6 GO:0000428 ... P68694 N/A
    800204 8p0j:B (2.39) BS02 ZN 2.7.7.6 GO:0000428 ... P68694 N/A
    800205 8p0j:H (2.39) BS01 dna ? N/A P20998 N/A
    800206 8p0j:H (2.39) BS02 dna ? N/A P20998 N/A
    800207 8p0j:I (2.39) BS01 dna ? N/A P20986 N/A
    800208 8p0j:I (2.39) BS02 dna ? N/A P20986 N/A
    800209 8p0j:J (2.39) BS01 ZN 2.7.7.6 GO:0000428 ... P68315 N/A
    800210 8p0k:A (2.64) BS01 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    800211 8p0k:A (2.64) BS02 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    800212 8p0k:A (2.64) BS03 MG 2.7.7.6 GO:0000428 ... P20504 N/A
    800213 8p0k:A (2.64) BS04 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    800214 8p0k:A (2.64) BS05 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    800215 8p0k:B (2.64) BS01 dna 2.7.7.6 GO:0000428 ... P68694 N/A
    800216 8p0k:B (2.64) BS02 ZN 2.7.7.6 GO:0000428 ... P68694 N/A
    800217 8p0k:H (2.64) BS01 dna ? N/A P20998 N/A
    800218 8p0k:H (2.64) BS02 dna ? N/A P20998 N/A
    800219 8p0k:I (2.64) BS01 dna ? N/A P20986 N/A
    800220 8p0k:I (2.64) BS02 dna ? N/A P20986 N/A
    800221 8p0k:J (2.64) BS01 ZN 2.7.7.6 GO:0000428 ... P68315 N/A
    800222 8p0m:A (1.961) BS01 WCF ? N/A Q99594 38565920
    800223 8p0m:B (1.961) BS01 WCF ? N/A Q99594 38565920
    800224 8p0n:A (2.58) BS01 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    800225 8p0n:A (2.58) BS02 dna 2.7.7.6 GO:0000428 ... P20504 N/A
    800226 8p0n:A (2.58) BS03 MG 2.7.7.6 GO:0000428 ... P20504 N/A
    800227 8p0n:A (2.58) BS04 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    800228 8p0n:A (2.58) BS05 ZN 2.7.7.6 GO:0000428 ... P20504 N/A
    800229 8p0n:B (2.58) BS01 dna 2.7.7.6 GO:0000428 ... P68694 N/A
    800230 8p0n:B (2.58) BS02 ZN 2.7.7.6 GO:0000428 ... P68694 N/A
    800231 8p0n:H (2.58) BS01 dna ? N/A P20998 N/A
    800232 8p0n:H (2.58) BS02 dna ? N/A P20998 N/A
    800233 8p0n:I (2.58) BS01 dna ? N/A P20986 N/A
    800234 8p0n:I (2.58) BS02 dna ? N/A P20986 N/A
    800235 8p0n:J (2.58) BS01 ZN 2.7.7.6 GO:0000428 ... P68315 N/A
    800236 8p0t:I (2.65) BS01 X5C 3.4.25.1 N/A A2F2T6 N/A
    800237 8p0t:J (2.65) BS01 X5C ? GO:0000502 ... A2F3H9 N/A
    800238 8p0t:L (2.65) BS01 X5C 3.4.25.1 N/A A2DD57 N/A
    800239 8p0t:M (2.65) BS01 X5C ? GO:0000502 ... A2F716 N/A
    800240 8p0t:W (2.65) BS01 X5C 3.4.25.1 N/A A2F2T6 N/A
    800241 8p0t:X (2.65) BS01 X5C ? GO:0000502 ... A2F3H9 N/A
    800242 8p0t:Z (2.65) BS01 X5C 3.4.25.1 N/A A2DD57 N/A
    800243 8p0t:a (2.65) BS01 X5C ? GO:0000502 ... A2F716 N/A
    800244 8p0u:A (2.92) BS01 rna ? GO:0042025 ... P27194 N/A
    800245 8p0u:A (2.92) BS02 rna ? GO:0042025 ... P27194 N/A
    800246 8p0u:B (2.92) BS01 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    800247 8p0u:B (2.92) BS02 rna 2.7.7.48 GO:0000166 ... O41353 N/A
    800248 8p0u:B (2.92) BS03 MG 2.7.7.48 GO:0000166 ... O41353 N/A
    800249 8p0y:A (4.12) BS01 peptide ? GO:0019013 ... A0A1Q1NMU1 37888996
    800250 8p10:L (3.26) BS01 peptide ? GO:0019013 ... A0A1Q1NMU1 37888996
    800251 8p11:D (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    800252 8p11:E (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    800253 8p11:F (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    800254 8p11:G (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    800255 8p11:G (1.9) BS02 WD5 ? GO:0004888 ... P58154 N/A
    800256 8p11:H (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    800257 8p11:H (1.9) BS02 WD5 ? GO:0004888 ... P58154 N/A
    800258 8p11:I (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    800259 8p14:A (2.57) BS01 VIS 3.4.19.12 N/A Q96RU2 N/A
    800260 8p16:6 (2.77) BS01 rna ? GO:0005737 ... P07012 N/A
    800261 8p16:6 (2.77) BS02 rna ? GO:0005737 ... P07012 N/A
    800262 8p16:6 (2.77) BS03 rna ? GO:0005737 ... P07012 N/A
    800263 8p16:6 (2.77) BS04 rna ? GO:0005737 ... P07012 N/A
    800264 8p16:B (2.77) BS01 rna ? GO:0000027 ... P60422 N/A
    800265 8p16:B (2.77) BS02 rna ? GO:0000027 ... P60422 N/A
    800266 8p16:C (2.77) BS01 rna ? GO:0000027 ... P60438 N/A
    800267 8p16:D (2.77) BS01 rna ? GO:0001070 ... P60723 N/A
    800268 8p16:E (2.77) BS01 rna ? GO:0000027 ... P62399 N/A
    800269 8p16:E (2.77) BS02 rna ? GO:0000027 ... P62399 N/A
    800270 8p16:E (2.77) BS03 rna ? GO:0000027 ... P62399 N/A
    800271 8p16:F (2.77) BS01 rna ? GO:0000027 ... P0AG55 N/A
    800272 8p16:G (2.77) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    800273 8p16:I (2.77) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    800274 8p16:J (2.77) BS01 rna ? GO:0002181 ... P0AA10 N/A
    800275 8p16:K (2.77) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    800276 8p16:K (2.77) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    800277 8p16:L (2.77) BS01 rna ? GO:0002181 ... P02413 N/A
    800278 8p16:M (2.77) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    800279 8p16:M (2.77) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    800280 8p16:N (2.77) BS01 rna ? GO:0000027 ... P0AG44 N/A
    800281 8p16:O (2.77) BS01 rna ? GO:0002181 ... P0C018 N/A
    800282 8p16:O (2.77) BS02 rna ? GO:0002181 ... P0C018 N/A
    800283 8p16:P (2.77) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    800284 8p16:P (2.77) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    800285 8p16:Q (2.77) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    800286 8p16:R (2.77) BS01 rna ? GO:0002181 ... P0AG48 N/A
    800287 8p16:S (2.77) BS01 rna ? GO:0002181 ... P61175 N/A
    800288 8p16:T (2.77) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    800289 8p16:U (2.77) BS01 rna ? GO:0000027 ... P60624 N/A
    800290 8p16:V (2.77) BS01 rna ? GO:0000027 ... P68919 N/A
    800291 8p16:V (2.77) BS02 rna ? GO:0000027 ... P68919 N/A
    800292 8p16:W (2.77) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    800293 8p16:W (2.77) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    800294 8p16:X (2.77) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    800295 8p16:Y (2.77) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    800296 8p16:Z (2.77) BS01 rna ? GO:0000027 ... P0AG51 N/A
    800297 8p16:Z (2.77) BS02 rna ? GO:0000027 ... P0AG51 N/A
    800298 8p16:a (2.77) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    800299 8p16:a (2.77) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    800300 8p16:a (2.77) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    800301 8p16:b (2.77) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    800302 8p16:c (2.77) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    800303 8p16:d (2.77) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    800304 8p16:e (2.77) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    800305 8p16:f (2.77) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    800306 8p16:f (2.77) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    800307 8p16:g (2.77) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    800308 8p16:h (2.77) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    800309 8p16:h (2.77) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    800310 8p16:i (2.77) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    800311 8p16:j (2.77) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    800312 8p16:j (2.77) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    800313 8p16:k (2.77) BS01 rna ? GO:0002181 ... P02358 N/A
    800314 8p16:l (2.77) BS01 rna ? GO:0000028 ... P02359 N/A
    800315 8p16:l (2.77) BS02 rna ? GO:0000028 ... P02359 N/A
    800316 8p16:m (2.77) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    800317 8p16:n (2.77) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    800318 8p16:n (2.77) BS02 rna ? GO:0000049 ... P0A7X3 N/A
    800319 8p16:o (2.77) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    800320 8p16:p (2.77) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    800321 8p16:q (2.77) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    800322 8p16:r (2.77) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    800323 8p16:r (2.77) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    800324 8p16:s (2.77) BS01 rna ? GO:0000028 ... P0AG59 N/A
    800325 8p16:t (2.77) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    800326 8p16:t (2.77) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    800327 8p16:u (2.77) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    800328 8p16:v (2.77) BS01 rna ? GO:0000028 ... P0AG63 N/A
    800329 8p16:w (2.77) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    800330 8p16:x (2.77) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    800331 8p16:y (2.77) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    800332 8p16:z (2.77) BS01 rna ? GO:0000028 ... P68679 N/A
    800333 8p16:z (2.77) BS02 rna ? GO:0000028 ... P68679 N/A
    800334 8p17:6 (2.78) BS01 rna ? GO:0005737 ... P07012 N/A
    800335 8p17:6 (2.78) BS02 rna ? GO:0005737 ... P07012 N/A
    800336 8p17:6 (2.78) BS03 rna ? GO:0005737 ... P07012 N/A
    800337 8p17:6 (2.78) BS04 rna ? GO:0005737 ... P07012 N/A
    800338 8p17:B (2.78) BS01 rna ? GO:0000027 ... P60422 N/A
    800339 8p17:B (2.78) BS02 rna ? GO:0000027 ... P60422 N/A
    800340 8p17:C (2.78) BS01 rna ? GO:0000027 ... P60438 N/A
    800341 8p17:D (2.78) BS01 rna ? GO:0001070 ... P60723 N/A
    800342 8p17:E (2.78) BS01 rna ? GO:0000027 ... P62399 N/A
    800343 8p17:E (2.78) BS02 rna ? GO:0000027 ... P62399 N/A
    800344 8p17:E (2.78) BS03 rna ? GO:0000027 ... P62399 N/A
    800345 8p17:F (2.78) BS01 rna ? GO:0000027 ... P0AG55 N/A
    800346 8p17:G (2.78) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    800347 8p17:I (2.78) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    800348 8p17:J (2.78) BS01 rna ? GO:0002181 ... P0AA10 N/A
    800349 8p17:K (2.78) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    800350 8p17:K (2.78) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    800351 8p17:L (2.78) BS01 rna ? GO:0002181 ... P02413 N/A
    800352 8p17:M (2.78) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    800353 8p17:M (2.78) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    800354 8p17:N (2.78) BS01 rna ? GO:0000027 ... P0AG44 N/A
    800355 8p17:O (2.78) BS01 rna ? GO:0002181 ... P0C018 N/A
    800356 8p17:O (2.78) BS02 rna ? GO:0002181 ... P0C018 N/A
    800357 8p17:P (2.78) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    800358 8p17:P (2.78) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    800359 8p17:Q (2.78) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    800360 8p17:R (2.78) BS01 rna ? GO:0002181 ... P0AG48 N/A
    800361 8p17:S (2.78) BS01 rna ? GO:0002181 ... P61175 N/A
    800362 8p17:T (2.78) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    800363 8p17:U (2.78) BS01 rna ? GO:0000027 ... P60624 N/A
    800364 8p17:V (2.78) BS01 rna ? GO:0000027 ... P68919 N/A
    800365 8p17:W (2.78) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    800366 8p17:W (2.78) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    800367 8p17:X (2.78) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    800368 8p17:Y (2.78) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    800369 8p17:Z (2.78) BS01 rna ? GO:0000027 ... P0AG51 N/A
    800370 8p17:Z (2.78) BS02 rna ? GO:0000027 ... P0AG51 N/A
    800371 8p17:a (2.78) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    800372 8p17:a (2.78) BS02 rna ? GO:0002181 ... P0A7M9 N/A
    800373 8p17:a (2.78) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    800374 8p17:b (2.78) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    800375 8p17:c (2.78) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    800376 8p17:d (2.78) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    800377 8p17:e (2.78) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    800378 8p17:f (2.78) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    800379 8p17:f (2.78) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    800380 8p17:g (2.78) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    800381 8p17:h (2.78) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    800382 8p17:h (2.78) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    800383 8p17:i (2.78) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    800384 8p17:j (2.78) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    800385 8p17:j (2.78) BS02 rna ? GO:0000028 ... P0A7W1 N/A
    800386 8p17:k (2.78) BS01 rna ? GO:0002181 ... P02358 N/A
    800387 8p17:l (2.78) BS01 rna ? GO:0000028 ... P02359 N/A
    800388 8p17:l (2.78) BS02 rna ? GO:0000028 ... P02359 N/A
    800389 8p17:m (2.78) BS01 rna ? GO:0000028 ... P0A7W7 N/A
    800390 8p17:n (2.78) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    800391 8p17:n (2.78) BS02 rna ? GO:0000049 ... P0A7X3 N/A
    800392 8p17:o (2.78) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    800393 8p17:p (2.78) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    800394 8p17:q (2.78) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    800395 8p17:r (2.78) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    800396 8p17:r (2.78) BS02 rna ? GO:0000049 ... P0A7S9 N/A
    800397 8p17:s (2.78) BS01 rna ? GO:0000028 ... P0AG59 N/A
    800398 8p17:t (2.78) BS01 rna ? GO:0000028 ... P0ADZ4 N/A
    800399 8p17:t (2.78) BS02 rna ? GO:0000028 ... P0ADZ4 N/A
    800400 8p17:u (2.78) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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