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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    799401 8ovj:B (2.4) BS04 rna ? GO:0003723 ... Q4Q2Q6 38722744
    799402 8ovj:C (2.4) BS01 rna ? GO:0003723 ... E9ADW5 38722744
    799403 8ovj:C (2.4) BS02 rna ? GO:0003723 ... E9ADW5 38722744
    799404 8ovj:C (2.4) BS03 rna ? GO:0003723 ... E9ADW5 38722744
    799405 8ovj:D (2.4) BS01 rna ? GO:0003723 ... P48157 38722744
    799406 8ovj:D (2.4) BS02 rna ? GO:0003723 ... P48157 38722744
    799407 8ovj:E (2.4) BS01 rna ? GO:0002181 ... Q4QC91 38722744
    799408 8ovj:E (2.4) BS02 rna ? GO:0002181 ... Q4QC91 38722744
    799409 8ovj:E (2.4) BS03 rna ? GO:0002181 ... Q4QC91 38722744
    799410 8ovj:F (2.4) BS01 rna ? GO:0000027 ... Q4Q4D3 38722744
    799411 8ovj:F (2.4) BS02 rna ? GO:0000027 ... Q4Q4D3 38722744
    799412 8ovj:G (2.4) BS01 rna ? GO:0000470 ... Q4QIP1 38722744
    799413 8ovj:G (2.4) BS02 rna ? GO:0000470 ... Q4QIP1 38722744
    799414 8ovj:G (2.4) BS03 rna ? GO:0000470 ... Q4QIP1 38722744
    799415 8ovj:H (2.4) BS01 rna ? GO:0003729 ... Q4QFG2 38722744
    799416 8ovj:H (2.4) BS02 rna ? GO:0003729 ... Q4QFG2 38722744
    799417 8ovj:H (2.4) BS03 rna ? GO:0003729 ... Q4QFG2 38722744
    799418 8ovj:H (2.4) BS04 rna ? GO:0003729 ... Q4QFG2 38722744
    799419 8ovj:I (2.4) BS01 rna ? GO:0003723 ... E9AEA8 38722744
    799420 8ovj:I (2.4) BS02 rna ? GO:0003723 ... E9AEA8 38722744
    799421 8ovj:J (2.4) BS01 rna ? GO:0003735 ... E9AFK3 38722744
    799422 8ovj:J (2.4) BS02 rna ? GO:0003735 ... E9AFK3 38722744
    799423 8ovj:K (2.4) BS01 rna ? GO:0003723 ... Q4QBJ1 38722744
    799424 8ovj:K (2.4) BS02 rna ? GO:0003723 ... Q4QBJ1 38722744
    799425 8ovj:K (2.4) BS03 rna ? GO:0003723 ... Q4QBJ1 38722744
    799426 8ovj:L (2.4) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    799427 8ovj:L (2.4) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    799428 8ovj:M (2.4) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    799429 8ovj:M (2.4) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    799430 8ovj:M (2.4) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    799431 8ovj:M (2.4) BS04 MG ? GO:0002181 ... Q4Q6S3 38722744
    799432 8ovj:N (2.4) BS01 rna ? GO:0000027 ... O97213 38722744
    799433 8ovj:N (2.4) BS02 rna ? GO:0000027 ... O97213 38722744
    799434 8ovj:N (2.4) BS03 rna ? GO:0000027 ... O97213 38722744
    799435 8ovj:O (2.4) BS01 rna ? GO:0000027 ... E9AF09 38722744
    799436 8ovj:O (2.4) BS02 rna ? GO:0000027 ... E9AF09 38722744
    799437 8ovj:O (2.4) BS03 rna ? GO:0000027 ... E9AF09 38722744
    799438 8ovj:P (2.4) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    799439 8ovj:P (2.4) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    799440 8ovj:Q (2.4) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    799441 8ovj:Q (2.4) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    799442 8ovj:Q (2.4) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    799443 8ovj:Q (2.4) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    799444 8ovj:Q (2.4) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    799445 8ovj:R (2.4) BS01 rna ? GO:0003735 ... Q4Q5J4 38722744
    799446 8ovj:R (2.4) BS02 rna ? GO:0003735 ... Q4Q5J4 38722744
    799447 8ovj:R (2.4) BS03 rna ? GO:0003735 ... Q4Q5J4 38722744
    799448 8ovj:S (2.4) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    799449 8ovj:S (2.4) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    799450 8ovj:S (2.4) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    799451 8ovj:SA (2.4) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    799452 8ovj:SB (2.4) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    799453 8ovj:SC (2.4) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    799454 8ovj:SD (2.4) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    799455 8ovj:SE (2.4) BS01 rna ? GO:0003723 ... Q4QG31 38722744
    799456 8ovj:SF (2.4) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    799457 8ovj:SG (2.4) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    799458 8ovj:SH (2.4) BS01 rna ? GO:0000028 ... Q868B1 38722744
    799459 8ovj:SH (2.4) BS02 MG ? GO:0000028 ... Q868B1 38722744
    799460 8ovj:SI (2.4) BS01 rna ? GO:0003735 ... E9AC32 38722744
    799461 8ovj:SJ (2.4) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    799462 8ovj:SK (2.4) BS01 rna ? GO:0000462 ... P25204 38722744
    799463 8ovj:SL (2.4) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    799464 8ovj:SM (2.4) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    799465 8ovj:SN (2.4) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    799466 8ovj:SO (2.4) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    799467 8ovj:SP (2.4) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    799468 8ovj:SQ (2.4) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    799469 8ovj:SR (2.4) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    799470 8ovj:SS (2.4) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    799471 8ovj:SS (2.4) BS02 ZN ? GO:0002181 ... Q4Q817 38722744
    799472 8ovj:SS (2.4) BS03 MG ? GO:0002181 ... Q4Q817 38722744
    799473 8ovj:ST (2.4) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    799474 8ovj:SV (2.4) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    799475 8ovj:SW (2.4) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    799476 8ovj:SX (2.4) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    799477 8ovj:SX (2.4) BS02 MG ? GO:0000028 ... E9AEE8 38722744
    799478 8ovj:SZ (2.4) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    799479 8ovj:Sa (2.4) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    799480 8ovj:Sb (2.4) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    799481 8ovj:Sb (2.4) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    799482 8ovj:Sc (2.4) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    799483 8ovj:Sd (2.4) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    799484 8ovj:Se (2.4) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    799485 8ovj:Sg (2.4) BS01 rna ? GO:0005080 ... Q4Q7Y7 38722744
    799486 8ovj:Sh (2.4) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    799487 8ovj:T (2.4) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    799488 8ovj:T (2.4) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    799489 8ovj:T (2.4) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    799490 8ovj:T (2.4) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    799491 8ovj:U (2.4) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    799492 8ovj:U (2.4) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    799493 8ovj:U (2.4) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    799494 8ovj:V (2.4) BS01 rna ? GO:0000027 ... Q4QJ20 38722744
    799495 8ovj:V (2.4) BS02 rna ? GO:0000027 ... Q4QJ20 38722744
    799496 8ovj:V (2.4) BS03 rna ? GO:0000027 ... Q4QJ20 38722744
    799497 8ovj:W (2.4) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    799498 8ovj:W (2.4) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    799499 8ovj:X (2.4) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    799500 8ovj:X (2.4) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    799501 8ovj:Y (2.4) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    799502 8ovj:Y (2.4) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    799503 8ovj:Z (2.4) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    799504 8ovj:a (2.4) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    799505 8ovj:a (2.4) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    799506 8ovj:b (2.4) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    799507 8ovj:b (2.4) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    799508 8ovj:c (2.4) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    799509 8ovj:c (2.4) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    799510 8ovj:d (2.4) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    799511 8ovj:e (2.4) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    799512 8ovj:e (2.4) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    799513 8ovj:e (2.4) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    799514 8ovj:e (2.4) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    799515 8ovj:f (2.4) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    799516 8ovj:g (2.4) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    799517 8ovj:g (2.4) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    799518 8ovj:g (2.4) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    799519 8ovj:h (2.4) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    799520 8ovj:h (2.4) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    799521 8ovj:h (2.4) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    799522 8ovj:i (2.4) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    799523 8ovj:i (2.4) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    799524 8ovj:j (2.4) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    799525 8ovj:j (2.4) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    799526 8ovj:j (2.4) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    799527 8ovj:j (2.4) BS04 ZN ? GO:0003723 ... E9AEH2 38722744
    799528 8ovj:k (2.4) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    799529 8ovj:k (2.4) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    799530 8ovj:k (2.4) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    799531 8ovj:l (2.4) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    799532 8ovj:l (2.4) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    799533 8ovj:l (2.4) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    799534 8ovj:m (2.4) BS01 rna ? GO:0003735 ... P69201 38722744
    799535 8ovj:m (2.4) BS02 rna ? GO:0003735 ... P69201 38722744
    799536 8ovj:m (2.4) BS03 rna ? GO:0003735 ... P69201 38722744
    799537 8ovj:o (2.4) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    799538 8ovj:o (2.4) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    799539 8ovj:o (2.4) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    799540 8ovj:o (2.4) BS04 ZN ? GO:0003735 ... Q4QC01 38722744
    799541 8ovj:p (2.4) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    799542 8ovj:p (2.4) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    799543 8ovj:p (2.4) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    799544 8ovj:p (2.4) BS04 ZN ? GO:0003735 ... Q4Q3L3 38722744
    799545 8ovo:A (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    799546 8ovo:B (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    799547 8ovp:A (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    799548 8ovp:B (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    799549 8ovr:A (1.6) BS01 PIN ? GO:0005975 ... F8UNI4 N/A
    799550 8ovv:A (2.26) BS01 B12 ? GO:0016020 ... Q3SFD8 N/A
    799551 8ovw:A (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    799552 8ovw:A (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    799553 8ovw:B (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    799554 8ovw:B (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    799555 8ovw:I (3.4) BS01 dna ? GO:0000775 ... Q12748 37506202
    799556 8ovw:L (3.4) BS01 dna ? GO:0000775 ... P38265 37506202
    799557 8ovw:N (3.4) BS01 dna ? GO:0000775 ... P38907 37506202
    799558 8ovw:N (3.4) BS02 dna ? GO:0000775 ... P38907 37506202
    799559 8ovz:A (2.206) BS01 W3N 2.7.10.1 GO:0004672 ... P08581 37343272
    799560 8ovz:B (2.206) BS01 W3N 2.7.10.1 GO:0004672 ... P08581 37343272
    799561 8ow0:A (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    799562 8ow0:A (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    799563 8ow0:B (3.4) BS01 dna ? GO:0000122 ... P17106 37506202
    799564 8ow0:B (3.4) BS02 dna ? GO:0000122 ... P17106 37506202
    799565 8ow0:a (3.4) BS01 dna ? GO:0000070 ... P36012 37506202
    799566 8ow0:a (3.4) BS02 dna ? GO:0000070 ... P36012 37506202
    799567 8ow0:b (3.4) BS01 dna ? GO:0000500 ... P02309 37506202
    799568 8ow0:b (3.4) BS02 dna ? GO:0000500 ... P02309 37506202
    799569 8ow0:c (3.4) BS01 dna ? GO:0000122 ... P04911 37506202
    799570 8ow0:c (3.4) BS02 dna ? GO:0000122 ... P04911 37506202
    799571 8ow0:d (3.4) BS01 dna ? GO:0000122 ... P02293 37506202
    799572 8ow0:e (3.4) BS01 dna ? GO:0000070 ... P36012 37506202
    799573 8ow0:e (3.4) BS02 dna ? GO:0000070 ... P36012 37506202
    799574 8ow0:f (3.4) BS01 dna ? GO:0000500 ... P02309 37506202
    799575 8ow0:f (3.4) BS02 dna ? GO:0000500 ... P02309 37506202
    799576 8ow0:g (3.4) BS01 dna ? GO:0000122 ... P04911 37506202
    799577 8ow0:g (3.4) BS02 dna ? GO:0000122 ... P04911 37506202
    799578 8ow0:h (3.4) BS01 dna ? GO:0000122 ... P02293 37506202
    799579 8ow1:A (3.7) BS01 dna ? GO:0000122 ... P17106 37506202
    799580 8ow1:A (3.7) BS02 dna ? GO:0000122 ... P17106 37506202
    799581 8ow1:B (3.7) BS01 dna ? GO:0000122 ... P17106 37506202
    799582 8ow1:B (3.7) BS02 dna ? GO:0000122 ... P17106 37506202
    799583 8ow1:CE (3.7) BS01 dna ? GO:0000775 ... P40969 37506202
    799584 8ow1:II (3.7) BS01 dna ? GO:0000775 ... Q12748 37506202
    799585 8ow1:N (3.7) BS01 dna ? GO:0000775 ... P38907 37506202
    799586 8ow1:N (3.7) BS02 dna ? GO:0000775 ... P38907 37506202
    799587 8ow1:QQ (3.7) BS01 dna ? GO:0000775 ... P53298 37506202
    799588 8ow1:a (3.7) BS01 dna ? GO:0000070 ... P36012 37506202
    799589 8ow1:a (3.7) BS02 dna ? GO:0000070 ... P36012 37506202
    799590 8ow1:b (3.7) BS01 dna ? GO:0000500 ... P02309 37506202
    799591 8ow1:c (3.7) BS01 dna ? GO:0000122 ... P04911 37506202
    799592 8ow1:c (3.7) BS02 dna ? GO:0000122 ... P04911 37506202
    799593 8ow1:e (3.7) BS01 dna ? GO:0000070 ... P36012 37506202
    799594 8ow1:e (3.7) BS02 dna ? GO:0000070 ... P36012 37506202
    799595 8ow1:f (3.7) BS01 dna ? GO:0000500 ... P02309 37506202
    799596 8ow1:f (3.7) BS02 dna ? GO:0000500 ... P02309 37506202
    799597 8ow1:g (3.7) BS01 dna ? GO:0000122 ... P04911 37506202
    799598 8ow1:g (3.7) BS02 dna ? GO:0000122 ... P04911 37506202
    799599 8ow1:h (3.7) BS01 dna ? GO:0000122 ... P02293 37506202
    799600 8ow2:A (2.57) BS01 QIH 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0016301 ... P42336 37225977
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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