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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    799201 8ova:Bk (2.47) BS01 rna ? GO:0000463 ... Q38FW8 37985661
    799202 8ova:Bk (2.47) BS02 rna ? GO:0000463 ... Q38FW8 37985661
    799203 8ova:Bl (2.47) BS01 rna ? GO:0002181 ... Q584G9 37985661
    799204 8ova:Bl (2.47) BS02 rna ? GO:0002181 ... Q584G9 37985661
    799205 8ova:Bl (2.47) BS03 rna ? GO:0002181 ... Q584G9 37985661
    799206 8ova:Bm (2.47) BS01 rna ? GO:0002181 ... Q38CY6 37985661
    799207 8ova:Bm (2.47) BS02 rna ? GO:0002181 ... Q38CY6 37985661
    799208 8ova:Bn (2.47) BS01 rna ? GO:0003723 ... Q386L1 37985661
    799209 8ova:Bn (2.47) BS02 rna ? GO:0003723 ... Q386L1 37985661
    799210 8ova:Bn (2.47) BS03 rna ? GO:0003723 ... Q386L1 37985661
    799211 8ova:Bn (2.47) BS04 ZN ? GO:0003723 ... Q386L1 37985661
    799212 8ova:Bo (2.47) BS01 rna ? GO:0003735 ... Q38AW9 37985661
    799213 8ova:Bo (2.47) BS02 rna ? GO:0003735 ... Q38AW9 37985661
    799214 8ova:Bo (2.47) BS03 rna ? GO:0003735 ... Q38AW9 37985661
    799215 8ova:Bo (2.47) BS04 ZN ? GO:0003735 ... Q38AW9 37985661
    799216 8ova:Bp (2.47) BS01 rna ? GO:0003735 ... Q38FV6 37985661
    799217 8ova:Bp (2.47) BS02 rna ? GO:0003735 ... Q38FV6 37985661
    799218 8ova:Bq (2.47) BS01 rna ? GO:0003735 ... Q57UJ8 37985661
    799219 8ova:Bq (2.47) BS02 rna ? GO:0003735 ... Q57UJ8 37985661
    799220 8ova:Bq (2.47) BS03 rna ? GO:0003735 ... Q57UJ8 37985661
    799221 8ova:Br (2.47) BS01 rna ? GO:0003723 ... Q582N2 37985661
    799222 8ova:Br (2.47) BS02 rna ? GO:0003723 ... Q582N2 37985661
    799223 8ova:Br (2.47) BS03 rna ? GO:0003723 ... Q582N2 37985661
    799224 8ova:Bs (2.47) BS01 rna ? GO:0003735 ... P21899 37985661
    799225 8ova:Bs (2.47) BS02 rna ? GO:0003735 ... P21899 37985661
    799226 8ova:Bs (2.47) BS03 ZN ? GO:0003735 ... P21899 37985661
    799227 8ova:Bt (2.47) BS01 rna ? GO:0003735 ... P17843 37985661
    799228 8ova:Bt (2.47) BS02 rna ? GO:0003735 ... P17843 37985661
    799229 8ova:Bt (2.47) BS03 rna ? GO:0003735 ... P17843 37985661
    799230 8ova:Bu (2.47) BS01 rna ? GO:0000027 ... Q38CY8 37985661
    799231 8ova:Bu (2.47) BS02 rna ? GO:0000027 ... Q38CY8 37985661
    799232 8ova:Bu (2.47) BS03 rna ? GO:0000027 ... Q38CY8 37985661
    799233 8ova:Bv (2.47) BS01 rna ? GO:0000027 ... Q389K1 37985661
    799234 8ova:Bv (2.47) BS02 rna ? GO:0000027 ... Q389K1 37985661
    799235 8ova:Bw (2.47) BS01 rna ? GO:0000463 ... Q57V35 37985661
    799236 8ova:Bw (2.47) BS02 rna ? GO:0000463 ... Q57V35 37985661
    799237 8ova:Bx (2.47) BS01 rna ? GO:0000470 ... Q57VM1 37985661
    799238 8ova:Bx (2.47) BS02 rna ? GO:0000470 ... Q57VM1 37985661
    799239 8ova:Bx (2.47) BS03 rna ? GO:0000470 ... Q57VM1 37985661
    799240 8ova:By (2.47) BS01 rna ? GO:0002181 ... Q38CD0 37985661
    799241 8ova:By (2.47) BS02 rna ? GO:0002181 ... Q38CD0 37985661
    799242 8ova:By (2.47) BS03 rna ? GO:0002181 ... Q38CD0 37985661
    799243 8ove:A0 (2.6) BS01 rna ? GO:0003729 ... Q38BK6 37985661
    799244 8ove:A1 (2.6) BS01 rna ? GO:0003723 ... Q386F2 37985661
    799245 8ove:A2 (2.6) BS01 rna ? GO:0000028 ... Q385D9 37985661
    799246 8ove:A3 (2.6) BS01 rna ? GO:0001558 ... Q38CL9 37985661
    799247 8ove:A4 (2.6) BS01 rna ? GO:0003735 ... Q38FD9 37985661
    799248 8ove:A5 (2.6) BS01 rna ? GO:0000462 ... Q57YL6 37985661
    799249 8ove:A5 (2.6) BS02 rna ? GO:0000462 ... Q57YL6 37985661
    799250 8ove:A5 (2.6) BS03 MG ? GO:0000462 ... Q57YL6 37985661
    799251 8ove:A6 (2.6) BS01 rna ? GO:0003723 ... P17959 37985661
    799252 8ove:A7 (2.6) BS01 rna ? GO:0001934 ... P69103 37985661
    799253 8ove:AC (2.6) BS01 rna ? GO:0000028 ... Q383I8 37985661
    799254 8ove:AD (2.6) BS01 rna ? GO:0003723 ... Q38B66 37985661
    799255 8ove:AE (2.6) BS01 rna ? GO:0000314 ... Q38CI4 37985661
    799256 8ove:AG (2.6) BS01 rna ? GO:0003735 ... Q586C2 37985661
    799257 8ove:AH (2.6) BS01 rna ? GO:0000028 ... P19800 37985661
    799258 8ove:AI (2.6) BS01 rna ? GO:0000028 ... Q57XN7 37985661
    799259 8ove:AJ (2.6) BS01 rna ? GO:0000314 ... Q580K6 37985661
    799260 8ove:AK (2.6) BS01 rna ? GO:0000462 ... Q57VV0 37985661
    799261 8ove:AL (2.6) BS01 rna ? GO:0003735 ... Q382Z8 37985661
    799262 8ove:AM (2.6) BS01 rna ? GO:0000314 ... Q38B69 37985661
    799263 8ove:AO (2.6) BS01 rna ? GO:0000028 ... Q583K7 37985661
    799264 8ove:AP (2.6) BS01 rna ? GO:0003723 ... Q388D3 37985661
    799265 8ove:AS (2.6) BS01 rna ? GO:0003735 ... Q38CD1 37985661
    799266 8ove:AT (2.6) BS01 rna ? GO:0003735 ... Q38AM9 37985661
    799267 8ove:AU (2.6) BS01 rna ? GO:0003735 ... Q57XX0 37985661
    799268 8ove:AV (2.6) BS01 rna ? GO:0003729 ... Q384J9 37985661
    799269 8ove:AW (2.6) BS01 rna ? GO:0000028 ... Q383V7 37985661
    799270 8ove:AX (2.6) BS01 rna ? GO:0003723 ... Q38EW1 37985661
    799271 8ove:AY (2.6) BS01 rna ? GO:0003735 ... Q584U5 37985661
    799272 8ove:AZ (2.6) BS01 rna ? GO:0000028 ... Q57U30 37985661
    799273 8ove:Az (2.6) BS01 rna ? GO:0003676 ... Q382D5 37985661
    799274 8ove:BI (2.6) BS01 rna ? GO:0003723 ... P50885 37985661
    799275 8ove:BI (2.6) BS02 rna ? GO:0003723 ... P50885 37985661
    799276 8ove:BK (2.6) BS01 rna ? GO:0000027 ... Q38EC5 37985661
    799277 8ove:BK (2.6) BS02 rna ? GO:0000027 ... Q38EC5 37985661
    799278 8ove:BK (2.6) BS03 rna ? GO:0000027 ... Q38EC5 37985661
    799279 8ove:BL (2.6) BS01 rna ? GO:0003723 ... Q38EI9 37985661
    799280 8ove:BL (2.6) BS02 rna ? GO:0003723 ... Q38EI9 37985661
    799281 8ove:BN (2.6) BS01 rna ? GO:0003723 ... Q57V55 37985661
    799282 8ove:BN (2.6) BS02 rna ? GO:0003723 ... Q57V55 37985661
    799283 8ove:BN (2.6) BS03 rna ? GO:0003723 ... Q57V55 37985661
    799284 8ove:BO (2.6) BS01 rna ? GO:0003729 ... Q585J5 37985661
    799285 8ove:BO (2.6) BS02 rna ? GO:0003729 ... Q585J5 37985661
    799286 8ove:BO (2.6) BS03 rna ? GO:0003729 ... Q585J5 37985661
    799287 8ove:BO (2.6) BS04 rna ? GO:0003729 ... Q585J5 37985661
    799288 8ove:BP (2.6) BS01 rna ? GO:0003723 ... Q383F5 37985661
    799289 8ove:BP (2.6) BS02 rna ? GO:0003723 ... Q383F5 37985661
    799290 8ove:BP (2.6) BS03 rna ? GO:0003723 ... Q383F5 37985661
    799291 8ove:BQ (2.6) BS01 rna ? GO:0002181 ... Q38CY7 37985661
    799292 8ove:BQ (2.6) BS02 rna ? GO:0002181 ... Q38CY7 37985661
    799293 8ove:BQ (2.6) BS03 rna ? GO:0002181 ... Q38CY7 37985661
    799294 8ove:BR (2.6) BS01 rna ? GO:0002181 ... Q385T6 37985661
    799295 8ove:BR (2.6) BS02 rna ? GO:0002181 ... Q385T6 37985661
    799296 8ove:BR (2.6) BS03 rna ? GO:0002181 ... Q385T6 37985661
    799297 8ove:BR (2.6) BS04 rna ? GO:0002181 ... Q385T6 37985661
    799298 8ove:BR (2.6) BS05 rna ? GO:0002181 ... Q385T6 37985661
    799299 8ove:BS (2.6) BS01 rna ? GO:0003729 ... Q382C4 37985661
    799300 8ove:BS (2.6) BS02 rna ? GO:0003729 ... Q382C4 37985661
    799301 8ove:BS (2.6) BS03 rna ? GO:0003729 ... Q382C4 37985661
    799302 8ove:BT (2.6) BS01 rna ? GO:0003723 ... Q57ZI7 37985661
    799303 8ove:BT (2.6) BS02 rna ? GO:0003723 ... Q57ZI7 37985661
    799304 8ove:BT (2.6) BS03 rna ? GO:0003723 ... Q57ZI7 37985661
    799305 8ove:BT (2.6) BS04 rna ? GO:0003723 ... Q57ZI7 37985661
    799306 8ove:BT (2.6) BS05 rna ? GO:0003723 ... Q57ZI7 37985661
    799307 8ove:BU (2.6) BS01 rna ? GO:0003735 ... Q4FKD4 37985661
    799308 8ove:BU (2.6) BS02 rna ? GO:0003735 ... Q4FKD4 37985661
    799309 8ove:BU (2.6) BS03 rna ? GO:0003735 ... Q4FKD4 37985661
    799310 8ove:BV (2.6) BS01 rna ? GO:0002181 ... Q383R3 37985661
    799311 8ove:BV (2.6) BS02 rna ? GO:0002181 ... Q383R3 37985661
    799312 8ove:BV (2.6) BS03 rna ? GO:0002181 ... Q383R3 37985661
    799313 8ove:BW (2.6) BS01 rna ? GO:0003735 ... Q38DP2 37985661
    799314 8ove:BW (2.6) BS02 rna ? GO:0003735 ... Q38DP2 37985661
    799315 8ove:BX (2.6) BS01 rna ? GO:0000027 ... P41165 37985661
    799316 8ove:BX (2.6) BS02 rna ? GO:0000027 ... P41165 37985661
    799317 8ove:BX (2.6) BS03 rna ? GO:0000027 ... P41165 37985661
    799318 8ove:BY (2.6) BS01 rna ? GO:0002181 ... O77067 37985661
    799319 8ove:BY (2.6) BS02 rna ? GO:0002181 ... O77067 37985661
    799320 8ove:BZ (2.6) BS01 rna ? GO:0002181 ... Q38D25 37985661
    799321 8ove:BZ (2.6) BS02 rna ? GO:0002181 ... Q38D25 37985661
    799322 8ove:Ba (2.6) BS01 rna ? GO:0003735 ... Q381J6 37985661
    799323 8ove:Ba (2.6) BS02 rna ? GO:0003735 ... Q381J6 37985661
    799324 8ove:Bb (2.6) BS01 rna ? GO:0003735 ... Q38DN9 37985661
    799325 8ove:Bb (2.6) BS02 rna ? GO:0003735 ... Q38DN9 37985661
    799326 8ove:Bc (2.6) BS01 rna ? GO:0003729 ... Q385E9 37985661
    799327 8ove:Bd (2.6) BS01 rna ? GO:0002181 ... Q383S6 37985661
    799328 8ove:Bd (2.6) BS02 rna ? GO:0002181 ... Q383S6 37985661
    799329 8ove:Be (2.6) BS01 rna ? GO:0002181 ... Q57W56 37985661
    799330 8ove:Be (2.6) BS02 rna ? GO:0002181 ... Q57W56 37985661
    799331 8ove:Be (2.6) BS03 rna ? GO:0002181 ... Q57W56 37985661
    799332 8ove:Bf (2.6) BS01 rna ? GO:0003723 ... Q581Q1 37985661
    799333 8ove:Bf (2.6) BS02 rna ? GO:0003723 ... Q581Q1 37985661
    799334 8ove:Bf (2.6) BS03 rna ? GO:0003723 ... Q581Q1 37985661
    799335 8ove:Bf (2.6) BS04 rna ? GO:0003723 ... Q581Q1 37985661
    799336 8ove:Bg (2.6) BS01 rna ? GO:0003723 ... P49153 37985661
    799337 8ove:Bh (2.6) BS01 rna ? GO:0002181 ... Q38DH8 37985661
    799338 8ove:Bh (2.6) BS02 rna ? GO:0002181 ... Q38DH8 37985661
    799339 8ove:Bh (2.6) BS03 rna ? GO:0002181 ... Q38DH8 37985661
    799340 8ove:Bh (2.6) BS04 rna ? GO:0002181 ... Q38DH8 37985661
    799341 8ove:Bi (2.6) BS01 rna ? GO:0003735 ... Q38CL1 37985661
    799342 8ove:Bj (2.6) BS01 rna ? GO:0003735 ... Q383V6 37985661
    799343 8ove:Bj (2.6) BS02 rna ? GO:0003735 ... Q383V6 37985661
    799344 8ove:Bj (2.6) BS03 rna ? GO:0003735 ... Q383V6 37985661
    799345 8ove:Bk (2.6) BS01 rna ? GO:0000463 ... Q38FW8 37985661
    799346 8ove:Bk (2.6) BS02 rna ? GO:0000463 ... Q38FW8 37985661
    799347 8ove:Bl (2.6) BS01 rna ? GO:0002181 ... Q584G9 37985661
    799348 8ove:Bl (2.6) BS02 rna ? GO:0002181 ... Q584G9 37985661
    799349 8ove:Bl (2.6) BS03 rna ? GO:0002181 ... Q584G9 37985661
    799350 8ove:Bm (2.6) BS01 rna ? GO:0002181 ... Q38CY6 37985661
    799351 8ove:Bm (2.6) BS02 rna ? GO:0002181 ... Q38CY6 37985661
    799352 8ove:Bn (2.6) BS01 rna ? GO:0003723 ... Q386L1 37985661
    799353 8ove:Bn (2.6) BS02 rna ? GO:0003723 ... Q386L1 37985661
    799354 8ove:Bn (2.6) BS03 rna ? GO:0003723 ... Q386L1 37985661
    799355 8ove:Bo (2.6) BS01 rna ? GO:0003735 ... Q38AW9 37985661
    799356 8ove:Bo (2.6) BS02 rna ? GO:0003735 ... Q38AW9 37985661
    799357 8ove:Bo (2.6) BS03 rna ? GO:0003735 ... Q38AW9 37985661
    799358 8ove:Bp (2.6) BS01 rna ? GO:0003735 ... Q38FV6 37985661
    799359 8ove:Bp (2.6) BS02 rna ? GO:0003735 ... Q38FV6 37985661
    799360 8ove:Bp (2.6) BS03 rna ? GO:0003735 ... Q38FV6 37985661
    799361 8ove:Bq (2.6) BS01 rna ? GO:0003735 ... Q57UJ8 37985661
    799362 8ove:Bq (2.6) BS02 rna ? GO:0003735 ... Q57UJ8 37985661
    799363 8ove:Bq (2.6) BS03 rna ? GO:0003735 ... Q57UJ8 37985661
    799364 8ove:Br (2.6) BS01 rna ? GO:0003723 ... Q582N2 37985661
    799365 8ove:Br (2.6) BS02 rna ? GO:0003723 ... Q582N2 37985661
    799366 8ove:Br (2.6) BS03 rna ? GO:0003723 ... Q582N2 37985661
    799367 8ove:Bs (2.6) BS01 rna ? GO:0003735 ... P21899 37985661
    799368 8ove:Bt (2.6) BS01 rna ? GO:0003735 ... P17843 37985661
    799369 8ove:Bt (2.6) BS02 rna ? GO:0003735 ... P17843 37985661
    799370 8ove:Bt (2.6) BS03 rna ? GO:0003735 ... P17843 37985661
    799371 8ove:Bu (2.6) BS01 rna ? GO:0000027 ... Q38CY8 37985661
    799372 8ove:Bu (2.6) BS02 rna ? GO:0000027 ... Q38CY8 37985661
    799373 8ove:Bu (2.6) BS03 rna ? GO:0000027 ... Q38CY8 37985661
    799374 8ove:Bv (2.6) BS01 rna ? GO:0000027 ... Q389K1 37985661
    799375 8ove:Bv (2.6) BS02 rna ? GO:0000027 ... Q389K1 37985661
    799376 8ove:Bw (2.6) BS01 rna ? GO:0000463 ... Q57V35 37985661
    799377 8ove:Bw (2.6) BS02 rna ? GO:0000463 ... Q57V35 37985661
    799378 8ove:Bx (2.6) BS01 rna ? GO:0000470 ... Q57VM1 37985661
    799379 8ove:Bx (2.6) BS02 rna ? GO:0000470 ... Q57VM1 37985661
    799380 8ove:Bx (2.6) BS03 rna ? GO:0000470 ... Q57VM1 37985661
    799381 8ove:By (2.6) BS01 rna ? GO:0002181 ... Q38CD0 37985661
    799382 8ove:By (2.6) BS02 rna ? GO:0002181 ... Q38CD0 37985661
    799383 8ove:By (2.6) BS03 rna ? GO:0002181 ... Q38CD0 37985661
    799384 8ovf:A (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    799385 8ovf:B (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    799386 8ovf:C (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    799387 8ovf:D (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    799388 8ovf:E (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    799389 8ovf:F (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    799390 8ovh:A (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    799391 8ovh:B (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    799392 8ovh:C (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    799393 8ovh:D (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    799394 8ovj:A (2.4) BS01 rna ? GO:0002181 ... Q4FWX5 38722744
    799395 8ovj:A (2.4) BS02 rna ? GO:0002181 ... Q4FWX5 38722744
    799396 8ovj:A (2.4) BS03 rna ? GO:0002181 ... Q4FWX5 38722744
    799397 8ovj:A (2.4) BS04 rna ? GO:0002181 ... Q4FWX5 38722744
    799398 8ovj:B (2.4) BS01 rna ? GO:0003723 ... Q4Q2Q6 38722744
    799399 8ovj:B (2.4) BS02 rna ? GO:0003723 ... Q4Q2Q6 38722744
    799400 8ovj:B (2.4) BS03 rna ? GO:0003723 ... Q4Q2Q6 38722744
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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