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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    797801 8oo7:D (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797802 8oo7:E (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797803 8oo7:F (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797804 8oo7:J (2.8) BS01 dna ? N/A G0S589 37384673
    797805 8oo7:J (2.8) BS02 dna ? N/A G0S589 37384673
    797806 8oo7:J (2.8) BS03 ATP ? N/A G0S589 37384673
    797807 8oo7:M (2.8) BS01 dna ? GO:0000786 ... P68431 37384673
    797808 8oo7:M (2.8) BS02 dna ? GO:0000786 ... P68431 37384673
    797809 8oo7:N (2.8) BS01 dna ? GO:0000781 ... P62805 37384673
    797810 8oo7:N (2.8) BS02 dna ? GO:0000781 ... P62805 37384673
    797811 8oo7:O (2.8) BS01 dna ? GO:0000786 ... Q93077 37384673
    797812 8oo7:O (2.8) BS02 dna ? GO:0000786 ... Q93077 37384673
    797813 8oo7:P (2.8) BS01 dna ? GO:0000786 ... P62807 37384673
    797814 8oo7:P (2.8) BS02 dna ? GO:0000786 ... P62807 37384673
    797815 8oo7:Q (2.8) BS01 dna ? GO:0000786 ... P68431 37384673
    797816 8oo7:Q (2.8) BS02 dna ? GO:0000786 ... P68431 37384673
    797817 8oo7:R (2.8) BS01 dna ? GO:0000781 ... P62805 37384673
    797818 8oo7:R (2.8) BS02 dna ? GO:0000781 ... P62805 37384673
    797819 8oo8:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    797820 8oo8:A (1.4) BS02 VV8 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    797821 8ooa:M (3.18) BS01 dna ? GO:0000786 ... P68431 37384673
    797822 8ooa:M (3.18) BS02 dna ? GO:0000786 ... P68431 37384673
    797823 8ooa:N (3.18) BS01 dna ? GO:0000781 ... P62805 37384673
    797824 8ooa:N (3.18) BS02 dna ? GO:0000781 ... P62805 37384673
    797825 8ooa:O (3.18) BS01 dna ? GO:0000786 ... Q93077 37384673
    797826 8ooa:O (3.18) BS02 dna ? GO:0000786 ... Q93077 37384673
    797827 8ooa:P (3.18) BS01 dna ? GO:0000786 ... P62807 37384673
    797828 8ooa:P (3.18) BS02 dna ? GO:0000786 ... P62807 37384673
    797829 8ooa:Q (3.18) BS01 dna ? GO:0000786 ... P68431 37384673
    797830 8ooa:Q (3.18) BS02 dna ? GO:0000786 ... P68431 37384673
    797831 8ooa:R (3.18) BS01 dna ? GO:0000781 ... P62805 37384673
    797832 8ooa:R (3.18) BS02 dna ? GO:0000781 ... P62805 37384673
    797833 8ooc:A (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797834 8ooc:B (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797835 8ooc:C (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797836 8ooc:D (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797837 8ooc:E (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797838 8ooc:F (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797839 8ooc:J (2.93) BS01 ATP ? N/A G0S589 37384673
    797840 8ood:A (1.497) BS01 MG 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    797841 8ood:A (1.497) BS02 VY3 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    797842 8ood:A (1.497) BS03 VY3 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    797843 8oof:J (2.9) BS01 ATP ? N/A G0S589 37384673
    797844 8oog:A (1.384) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37389247
    797845 8oog:A (1.384) BS02 VUO 2.5.1.6 GO:0004478 ... P31153 37389247
    797846 8ooi:A (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    797847 8ooi:A (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    797848 8ooi:A (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    797849 8ooi:B (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    797850 8ooi:B (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    797851 8ooi:B (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    797852 8ooi:C (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    797853 8ooi:C (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    797854 8ooi:C (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    797855 8ooi:D (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    797856 8ooi:D (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    797857 8ooi:D (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    797858 8ooi:E (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    797859 8ooi:E (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    797860 8ooi:E (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    797861 8ooi:F (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    797862 8ooi:F (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    797863 8ooi:F (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    797864 8ooj:A (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797865 8ooj:A (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797866 8ooj:B (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797867 8ooj:B (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797868 8ooj:C (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797869 8ooj:C (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797870 8ooj:D (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797871 8ooj:D (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 38064712
    797872 8oom:A (1.82) BS01 PNY ? GO:0016407 ... Q84G21 N/A
    797873 8oop:A (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797874 8oop:B (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797875 8oop:C (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797876 8oop:D (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797877 8oop:E (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797878 8oop:F (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797879 8oop:I (2.7) BS01 dna ? GO:0005634 ... G0S590 37384673
    797880 8oop:J (2.7) BS01 dna ? N/A G0S589 37384673
    797881 8oop:J (2.7) BS02 ATP ? N/A G0S589 37384673
    797882 8oop:M (2.7) BS01 dna ? GO:0000786 ... P68431 37384673
    797883 8oop:M (2.7) BS02 dna ? GO:0000786 ... P68431 37384673
    797884 8oop:N (2.7) BS01 dna ? GO:0000781 ... P62805 37384673
    797885 8oop:N (2.7) BS02 dna ? GO:0000781 ... P62805 37384673
    797886 8oop:O (2.7) BS01 dna ? GO:0000786 ... Q93077 37384673
    797887 8oop:O (2.7) BS02 dna ? GO:0000786 ... Q93077 37384673
    797888 8oop:P (2.7) BS01 dna ? GO:0000786 ... P62807 37384673
    797889 8oop:P (2.7) BS02 dna ? GO:0000786 ... P62807 37384673
    797890 8oop:Q (2.7) BS01 dna ? GO:0000786 ... P68431 37384673
    797891 8oop:Q (2.7) BS02 dna ? GO:0000786 ... P68431 37384673
    797892 8oop:R (2.7) BS01 dna ? GO:0000781 ... P62805 37384673
    797893 8oop:R (2.7) BS02 dna ? GO:0000781 ... P62805 37384673
    797894 8oor:A (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797895 8oor:B (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797896 8oor:C (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797897 8oor:D (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797898 8oor:E (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797899 8oor:F (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    797900 8oor:J (2.87) BS01 ATP ? N/A G0S589 37384673
    797901 8oos:M (3.29) BS01 dna ? GO:0000786 ... P68431 37384673
    797902 8oos:M (3.29) BS02 dna ? GO:0000786 ... P68431 37384673
    797903 8oos:N (3.29) BS01 dna ? GO:0000781 ... P62805 37384673
    797904 8oos:N (3.29) BS02 dna ? GO:0000781 ... P62805 37384673
    797905 8oos:O (3.29) BS01 dna ? GO:0000786 ... Q93077 37384673
    797906 8oos:O (3.29) BS02 dna ? GO:0000786 ... Q93077 37384673
    797907 8oos:P (3.29) BS01 dna ? GO:0000786 ... P62807 37384673
    797908 8oos:P (3.29) BS02 dna ? GO:0000786 ... P62807 37384673
    797909 8oos:Q (3.29) BS01 dna ? GO:0000786 ... P68431 37384673
    797910 8oos:Q (3.29) BS02 dna ? GO:0000786 ... P68431 37384673
    797911 8oos:R (3.29) BS01 dna ? GO:0000781 ... P62805 37384673
    797912 8oos:R (3.29) BS02 dna ? GO:0000781 ... P62805 37384673
    797913 8oot:J (2.85) BS01 ATP ? N/A G0S589 37384673
    797914 8oou:A (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797915 8oou:B (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797916 8oou:C (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797917 8oou:D (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797918 8oou:E (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797919 8oou:F (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797920 8oou:G (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797921 8oou:H (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797922 8oou:I (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797923 8oou:J (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797924 8oou:K (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797925 8oou:L (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797926 8oou:M (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797927 8oou:N (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797928 8oou:O (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797929 8oou:P (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797930 8oou:Q (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797931 8oou:R (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797932 8oou:S (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797933 8oou:T (2.9) BS01 rna ? GO:0003723 ... P03418 37714861
    797934 8oov:A (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    797935 8oov:B (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    797936 8oov:C (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    797937 8oow:A (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797938 8oow:B (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797939 8oow:C (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797940 8oow:D (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797941 8oow:E (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797942 8oow:F (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797943 8oow:G (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797944 8oow:H (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797945 8oow:I (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797946 8oow:J (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797947 8oow:K (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797948 8oow:L (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797949 8oox:A (3.09) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797950 8oox:B (3.09) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797951 8ooy:A (4.0) BS01 rna 2.7.7.7 GO:0003676 ... P00582 37620586
    797952 8ooy:A (4.0) BS02 rna 2.7.7.7 GO:0003676 ... P00582 37620586
    797953 8ooy:A (4.0) BS03 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    797954 8ooz:A (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797955 8ooz:A (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797956 8ooz:B (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797957 8ooz:B (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797958 8ooz:C (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797959 8ooz:C (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797960 8ooz:C (2.7) BS03 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797961 8ooz:D (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797962 8ooz:D (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797963 8ooz:E (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797964 8ooz:E (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797965 8ooz:F (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797966 8ooz:F (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797967 8ooz:F (2.7) BS03 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797968 8ooz:G (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797969 8ooz:G (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797970 8ooz:H (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797971 8ooz:H (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797972 8ooz:I (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797973 8ooz:I (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797974 8ooz:J (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797975 8ooz:J (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797976 8ooz:K (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797977 8ooz:K (2.7) BS02 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797978 8ooz:K (2.7) BS03 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797979 8ooz:L (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797980 8ooz:L (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    797981 8op1:A (3.5) BS01 rna ? GO:0003723 ... P03418 37714861
    797982 8op1:A (3.5) BS02 rna ? GO:0003723 ... P03418 37714861
    797983 8op1:B (3.5) BS01 rna ? GO:0003723 ... P03418 37714861
    797984 8op1:B (3.5) BS02 rna ? GO:0003723 ... P03418 37714861
    797985 8op1:C (3.5) BS01 rna ? GO:0003723 ... P03418 37714861
    797986 8op1:D (3.5) BS01 rna ? GO:0003723 ... P03418 37714861
    797987 8op1:D (3.5) BS02 rna ? GO:0003723 ... P03418 37714861
    797988 8op1:E (3.5) BS01 rna ? GO:0003723 ... P03418 37714861
    797989 8op1:E (3.5) BS02 rna ? GO:0003723 ... P03418 37714861
    797990 8op2:A (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797991 8op2:B (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797992 8op2:D (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797993 8op2:E (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797994 8op2:G (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797995 8op2:H (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797996 8op2:J (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797997 8op2:K (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797998 8op2:M (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    797999 8op2:N (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798000 8op2:P (2.8) BS01 rna ? GO:0003723 ... P03418 37714861

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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