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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    797601 8on2:X (1.58) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797602 8on2:X (1.58) BS03 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797603 8on2:X (1.58) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797604 8on2:X (1.58) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797605 8on2:X (1.58) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797606 8on3:X (1.74) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797607 8on3:X (1.74) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797608 8on3:X (1.74) BS03 VV2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797609 8on3:X (1.74) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797610 8one:A (2.3) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    797611 8one:A (2.3) BS02 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    797612 8one:A (2.3) BS03 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    797613 8one:A (2.3) BS04 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    797614 8one:A (2.3) BS05 UPG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    797615 8onh:A (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797616 8onh:A (2.59) BS02 MAN ? N/A B3GVS7 37656766
    797617 8onh:A (2.59) BS03 GLC ? N/A B3GVS7 37656766
    797618 8onh:B (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797619 8onh:B (2.59) BS02 MAN ? N/A B3GVS7 37656766
    797620 8onh:B (2.59) BS03 MAN ? N/A B3GVS7 37656766
    797621 8onh:B (2.59) BS04 GLC ? N/A B3GVS7 37656766
    797622 8onh:C (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797623 8onh:C (2.59) BS02 GLC ? N/A B3GVS7 37656766
    797624 8onh:D (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797625 8onh:E (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797626 8onh:F (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797627 8onh:G (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797628 8onh:G (2.59) BS02 MAN ? N/A B3GVS7 37656766
    797629 8onh:G (2.59) BS03 MAN ? N/A B3GVS7 37656766
    797630 8onh:H (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797631 8onh:I (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797632 8onh:I (2.59) BS02 GLC ? N/A B3GVS7 37656766
    797633 8onh:J (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797634 8onh:J (2.59) BS02 MAN ? N/A B3GVS7 37656766
    797635 8onh:J (2.59) BS03 GLC ? N/A B3GVS7 37656766
    797636 8onh:K (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797637 8onh:K (2.59) BS02 GLC ? N/A B3GVS7 37656766
    797638 8onh:L (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797639 8onh:L (2.59) BS02 GLC ? N/A B3GVS7 37656766
    797640 8onh:M (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797641 8onh:N (2.59) BS01 BMA ? N/A B3GVS7 37656766
    797642 8onh:N (2.59) BS02 MAN ? N/A B3GVS7 37656766
    797643 8onh:N (2.59) BS03 GLC ? N/A B3GVS7 37656766
    797644 8onh:O (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797645 8onh:P (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797646 8onh:Q (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797647 8onh:R (2.59) BS01 GLC ? N/A B3GVS7 37656766
    797648 8onj:A (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    797649 8onj:B (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    797650 8onl:A (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    797651 8onl:B (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    797652 8onm:A (1.85) BS01 PMP ? GO:0003824 ... D5EHC5 N/A
    797653 8onm:B (1.85) BS01 PW0 ? GO:0003824 ... D5EHC5 N/A
    797654 8onm:B (1.85) BS02 PMP ? GO:0003824 ... D5EHC5 N/A
    797655 8onn:A (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    797656 8onn:B (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    797657 8onn:C (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    797658 8onn:D (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    797659 8onu:A (-1.00) BS01 peptide ? GO:0001530 ... V5VEZ9 37298811
    797660 8onv:A (1.01) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    797661 8onv:A (1.01) BS02 VU6 3.6.5.2 GO:0003924 ... P01116 37258666
    797662 8onx:A (1.3) BS01 MN 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    797663 8onx:A (1.3) BS02 MN 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    797664 8ony:A (2.92) BS01 rna 3.4.11.18 GO:0003723 ... P50579 38267453
    797665 8ony:A (2.92) BS02 CO 3.4.11.18 GO:0003723 ... P50579 38267453
    797666 8ony:A (2.92) BS03 CO 3.4.11.18 GO:0003723 ... P50579 38267453
    797667 8ony:LR (2.92) BS01 rna ? GO:0002181 ... P84098 38267453
    797668 8ony:LX (2.92) BS01 rna ? GO:0000027 ... P62750 38267453
    797669 8ony:LX (2.92) BS02 rna ? GO:0000027 ... P62750 38267453
    797670 8ony:LY (2.92) BS01 rna ? GO:0002181 ... P61254 38267453
    797671 8ony:LY (2.92) BS02 rna ? GO:0002181 ... P61254 38267453
    797672 8ony:Lh (2.92) BS01 rna ? GO:0000463 ... P42766 38267453
    797673 8ony:Lk (2.92) BS01 rna ? GO:0001501 ... P63173 38267453
    797674 8onz:A (2.94) BS01 rna 3.4.11.18 GO:0004177 ... G0SEA9 38267453
    797675 8onz:LR (2.94) BS01 rna ? GO:0003735 ... G0S9T3 38267453
    797676 8onz:LX (2.94) BS01 rna ? GO:0000027 ... G0S507 38267453
    797677 8onz:LX (2.94) BS02 rna ? GO:0000027 ... G0S507 38267453
    797678 8onz:LY (2.94) BS01 rna ? GO:0002181 ... G0RYN9 38267453
    797679 8onz:LY (2.94) BS02 rna ? GO:0002181 ... G0RYN9 38267453
    797680 8onz:Lh (2.94) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 38267453
    797681 8onz:Lk (2.94) BS01 rna ? GO:0003735 ... G0SG89 38267453
    797682 8oo0:A (3.1) BS01 rna ? GO:0001934 ... G0S9U0 38267453
    797683 8oo0:B (3.1) BS01 rna ? GO:0003676 ... G0S428 38267453
    797684 8oo0:C (3.1) BS01 rna 3.6.4.10 GO:0005524 ... G0SCU5 38267453
    797685 8oo0:D (3.1) BS01 rna 3.4.11.18 GO:0006508 ... G0SEA9 38267453
    797686 8oo0:LA (3.1) BS01 rna ? GO:0002181 ... G0S4P8 38267453
    797687 8oo0:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 38267453
    797688 8oo0:LC (3.1) BS01 rna ? GO:0003723 ... G0SFC3 38267453
    797689 8oo0:LC (3.1) BS02 rna ? GO:0003723 ... G0SFC3 38267453
    797690 8oo0:LD (3.1) BS01 rna ? GO:0000027 ... G0SEG2 38267453
    797691 8oo0:LD (3.1) BS02 rna ? GO:0000027 ... G0SEG2 38267453
    797692 8oo0:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 38267453
    797693 8oo0:LF (3.1) BS01 rna ? GO:0000463 ... G0SFL0 38267453
    797694 8oo0:LG (3.1) BS01 rna ? GO:0000470 ... G0SAJ9 38267453
    797695 8oo0:LG (3.1) BS02 rna ? GO:0000470 ... G0SAJ9 38267453
    797696 8oo0:LH (3.1) BS01 rna ? GO:0003735 ... G0S0E5 38267453
    797697 8oo0:LI (3.1) BS01 rna ? GO:0000027 ... G0SEI1 38267453
    797698 8oo0:LI (3.1) BS02 rna ? GO:0000027 ... G0SEI1 38267453
    797699 8oo0:LJ (3.1) BS01 rna ? GO:0003723 ... G0SHQ2 38267453
    797700 8oo0:LJ (3.1) BS02 rna ? GO:0003723 ... G0SHQ2 38267453
    797701 8oo0:LK (3.1) BS01 rna ? GO:0003735 ... G0SGH8 38267453
    797702 8oo0:LL (3.1) BS01 rna ? GO:0003723 ... G0S992 38267453
    797703 8oo0:LM (3.1) BS01 rna ? GO:0003723 ... G0S1R0 38267453
    797704 8oo0:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 38267453
    797705 8oo0:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 38267453
    797706 8oo0:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 38267453
    797707 8oo0:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 38267453
    797708 8oo0:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 38267453
    797709 8oo0:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 38267453
    797710 8oo0:LR (3.1) BS01 rna ? GO:0003723 ... G0S9T3 38267453
    797711 8oo0:LR (3.1) BS02 rna ? GO:0003723 ... G0S9T3 38267453
    797712 8oo0:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 38267453
    797713 8oo0:LS (3.1) BS02 rna ? GO:0003735 ... G0SCE2 38267453
    797714 8oo0:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 38267453
    797715 8oo0:LT (3.1) BS02 rna ? GO:0003735 ... G0S0Z3 38267453
    797716 8oo0:LU (3.1) BS01 rna ? GO:0002181 ... G0SDS8 38267453
    797717 8oo0:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 38267453
    797718 8oo0:LW (3.1) BS01 rna ? GO:0002181 ... G2Q623 38267453
    797719 8oo0:LW (3.1) BS02 rna ? GO:0002181 ... G2Q623 38267453
    797720 8oo0:LX (3.1) BS01 rna ? GO:0000027 ... G0S507 38267453
    797721 8oo0:LX (3.1) BS02 rna ? GO:0000027 ... G0S507 38267453
    797722 8oo0:LY (3.1) BS01 rna ? GO:0002181 ... G0RYN9 38267453
    797723 8oo0:LY (3.1) BS02 rna ? GO:0002181 ... G0RYN9 38267453
    797724 8oo0:LZ (3.1) BS01 rna ? GO:0003735 ... G0RZE9 38267453
    797725 8oo0:La (3.1) BS01 rna ? GO:0003735 ... G2QB77 38267453
    797726 8oo0:Lb (3.1) BS01 rna ? GO:0002181 ... Q2H9W4 38267453
    797727 8oo0:Lc (3.1) BS01 rna ? GO:0003723 ... G0SEI0 38267453
    797728 8oo0:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 38267453
    797729 8oo0:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 38267453
    797730 8oo0:Lf (3.1) BS01 rna ? GO:0002181 ... G0SCL3 38267453
    797731 8oo0:Lg (3.1) BS01 rna ? GO:0003735 ... G0SFN0 38267453
    797732 8oo0:Lg (3.1) BS02 ZN ? GO:0003735 ... G0SFN0 38267453
    797733 8oo0:Lh (3.1) BS01 rna 2.4.99.18 GO:0000463 ... G0S0D7 38267453
    797734 8oo0:Lh (3.1) BS02 rna 2.4.99.18 GO:0000463 ... G0S0D7 38267453
    797735 8oo0:Li (3.1) BS01 rna ? GO:0002181 ... G0SBN1 38267453
    797736 8oo0:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 38267453
    797737 8oo0:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 38267453
    797738 8oo0:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 38267453
    797739 8oo0:Lk (3.1) BS01 rna ? GO:0003735 ... G2Q8J4 38267453
    797740 8oo0:Ll (3.1) BS01 rna ? GO:0003735 ... Q2H9R2 38267453
    797741 8oo0:Ll (3.1) BS02 rna ? GO:0003735 ... Q2H9R2 38267453
    797742 8oo0:Lm (3.1) BS01 rna ? GO:0003735 ... A0A2A9PNA8 38267453
    797743 8oo0:Lm (3.1) BS02 ZN ? GO:0003735 ... A0A2A9PNA8 38267453
    797744 8oo0:Lo (3.1) BS01 rna ? GO:0003735 ... G0SBZ6 38267453
    797745 8oo0:Lo (3.1) BS02 ZN ? GO:0003735 ... G0SBZ6 38267453
    797746 8oo0:Lp (3.1) BS01 rna ? GO:0003735 ... G0S6B0 38267453
    797747 8oo0:Lp (3.1) BS02 ZN ? GO:0003735 ... G0S6B0 38267453
    797748 8oo0:Lq (3.1) BS01 rna ? GO:0003735 ... G0SHJ6 38267453
    797749 8oo0:Ls (3.1) BS01 rna ? GO:0000027 ... G0SGP3 38267453
    797750 8oo0:SA (3.1) BS01 rna ? GO:0000028 ... G0RYF9 38267453
    797751 8oo0:SB (3.1) BS01 rna ? GO:0003735 ... G0S7T8 38267453
    797752 8oo0:SC (3.1) BS01 rna ? GO:0003723 ... G0SAV4 38267453
    797753 8oo0:SD (3.1) BS01 rna ? GO:0003723 ... G0S6I7 38267453
    797754 8oo0:SE (3.1) BS01 rna ? GO:0003723 ... G0S1A6 38267453
    797755 8oo0:SF (3.1) BS01 rna ? GO:0000028 ... G0S1Z0 38267453
    797756 8oo0:SG (3.1) BS01 rna ? GO:0003735 ... G0RY43 38267453
    797757 8oo0:SH (3.1) BS01 rna ? GO:0003735 ... G0S8C4 38267453
    797758 8oo0:SI (3.1) BS01 rna ? GO:0000462 ... G0RY45 38267453
    797759 8oo0:SI (3.1) BS02 rna ? GO:0000462 ... G0RY45 38267453
    797760 8oo0:SJ (3.1) BS01 rna ? GO:0003723 ... G0S0Z4 38267453
    797761 8oo0:SK (3.1) BS01 rna ? GO:0003723 ... G0RZD8 38267453
    797762 8oo0:SL (3.1) BS01 rna ? GO:0003735 ... G0SF00 38267453
    797763 8oo0:SM (3.1) BS01 rna ? GO:0003735 ... G0SHH9 38267453
    797764 8oo0:SN (3.1) BS01 rna ? GO:0003735 ... G0RZM9 38267453
    797765 8oo0:SO (3.1) BS01 rna ? GO:0000028 ... G0SFL1 38267453
    797766 8oo0:SP (3.1) BS01 rna ? GO:0000028 ... G0S084 38267453
    797767 8oo0:SQ (3.1) BS01 rna ? GO:0000462 ... G0SBR7 38267453
    797768 8oo0:SR (3.1) BS01 rna ? GO:0003735 ... G0S871 38267453
    797769 8oo0:SS (3.1) BS01 rna ? GO:0003676 ... G0S6J7 38267453
    797770 8oo0:ST (3.1) BS01 rna ? GO:0000028 ... G0SFK8 38267453
    797771 8oo0:SU (3.1) BS01 rna ? GO:0003723 ... G0S379 38267453
    797772 8oo0:SW (3.1) BS01 rna ? GO:0003735 ... G0SHI0 38267453
    797773 8oo0:SX (3.1) BS01 rna ? GO:0003735 ... G0RY17 38267453
    797774 8oo0:SY (3.1) BS01 rna ? GO:0003735 ... P0CU28 38267453
    797775 8oo0:SZ (3.1) BS01 rna ? GO:0003735 ... G0S1Y9 38267453
    797776 8oo0:Sa (3.1) BS01 rna ? GO:0003729 ... G0S2X4 38267453
    797777 8oo0:Sa (3.1) BS02 ZN ? GO:0003729 ... G0S2X4 38267453
    797778 8oo0:Sb (3.1) BS01 rna ? GO:0000028 ... G0S1S4 38267453
    797779 8oo0:Sb (3.1) BS02 ZN ? GO:0000028 ... G0S1S4 38267453
    797780 8oo0:Sc (3.1) BS01 rna ? GO:0000028 ... G0S9M9 38267453
    797781 8oo0:Sd (3.1) BS01 rna ? GO:0003735 ... Q2HB68 38267453
    797782 8oo0:Sd (3.1) BS02 ZN ? GO:0003735 ... Q2HB68 38267453
    797783 8oo0:Se (3.1) BS01 rna ? GO:0003735 ... Q2H4C5 38267453
    797784 8oo0:Sf (3.1) BS01 rna ? GO:0003735 ... G0S2X5 38267453
    797785 8oo1:A (3.7) BS01 URA ? GO:0005886 ... P0AGM7 39209842
    797786 8oo1:A (3.7) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    797787 8oo1:A (3.7) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    797788 8oo1:C (3.7) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    797789 8oo1:C (3.7) BS02 URA ? GO:0005886 ... P0AGM7 39209842
    797790 8oo1:C (3.7) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    797791 8oo2:A (1.85) BS01 AV8 ? GO:0000976 ... V9XTV0 37466921
    797792 8oo2:B (1.85) BS01 AV8 ? GO:0000976 ... V9XTV0 37466921
    797793 8oo5:P (2.25) BS01 VUF 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    797794 8oo5:P (2.25) BS02 VUF 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    797795 8oo6:A (4.3) BS01 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    797796 8oo6:A (4.3) BS02 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    797797 8oo6:A (4.3) BS03 dna 2.7.7.7 GO:0003676 ... P00582 37620586
    797798 8oo7:A (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797799 8oo7:B (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    797800 8oo7:C (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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