Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 3978 3979 3980 3981 3982 3983 3984 3985 3986 3987 3988 3989 3990 3991 3992 3993 3994 3995 3996 3997 3998 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    797401 8om2:B (2.57) BS01 rna ? GO:0003735 ... P32902 38199006
    797402 8om2:B (2.57) BS02 MG ? GO:0003735 ... P32902 38199006
    797403 8om2:C (2.57) BS01 rna ? GO:0003735 ... P02381 38199006
    797404 8om2:D (2.57) BS01 rna ? GO:0003723 ... P27929 38199006
    797405 8om2:E (2.57) BS01 rna ? GO:0003723 ... P33759 38199006
    797406 8om2:F (2.57) BS01 rna ? GO:0003735 ... P28778 38199006
    797407 8om2:G (2.57) BS01 rna ? GO:0000028 ... P47150 38199006
    797408 8om2:H (2.57) BS01 rna ? GO:0003735 ... Q03799 38199006
    797409 8om2:I (2.57) BS01 rna ? GO:0003723 ... P38120 38199006
    797410 8om2:J (2.57) BS01 rna ? GO:0003735 ... Q03201 38199006
    797411 8om2:K (2.57) BS01 rna ? GO:0003735 ... P42847 38199006
    797412 8om2:L (2.57) BS01 rna ? GO:0003735 ... P53732 38199006
    797413 8om2:M (2.57) BS01 rna ? GO:0003676 ... P53937 38199006
    797414 8om2:N (2.57) BS01 rna ? GO:0003735 ... P10663 38199006
    797415 8om2:O (2.57) BS01 rna ? GO:0003735 ... P21771 38199006
    797416 8om2:P (2.57) BS01 rna ? GO:0003735 ... Q02608 38199006
    797417 8om2:Q (2.57) BS01 rna ? GO:0003735 ... Q03246 38199006
    797418 8om2:R (2.57) BS01 rna ? GO:0003735 ... P40033 38199006
    797419 8om2:S (2.57) BS01 rna ? GO:0000028 ... P53733 38199006
    797420 8om2:T (2.57) BS01 rna ? GO:0003735 ... P38175 38199006
    797421 8om2:U (2.57) BS01 rna ? GO:0003735 ... P40496 38199006
    797422 8om2:V (2.57) BS01 rna ? GO:0003735 ... P17558 38199006
    797423 8om2:W (2.57) BS01 rna ? GO:0003735 ... Q01163 38199006
    797424 8om2:W (2.57) BS02 ATP ? GO:0003735 ... Q01163 38199006
    797425 8om2:X (2.57) BS01 rna ? GO:0003735 ... P53305 38199006
    797426 8om2:Y (2.57) BS01 rna ? GO:0003735 ... Q03976 38199006
    797427 8om2:Z (2.57) BS01 rna ? GO:0003735 ... O75012 38199006
    797428 8om2:c (2.57) BS01 rna 2.1.1.- GO:0003735 ... P36056 38199006
    797429 8om2:c (2.57) BS02 SF4 2.1.1.- GO:0003735 ... P36056 38199006
    797430 8om3:1 (2.87) BS01 rna ? GO:0003735 ... P32344 38199006
    797431 8om3:2 (2.87) BS01 rna ? GO:0003735 ... P38783 38199006
    797432 8om3:3 (2.87) BS01 rna ? GO:0003735 ... P47141 38199006
    797433 8om3:5 (2.87) BS01 rna ? GO:0003735 ... P12686 38199006
    797434 8om3:6 (2.87) BS01 rna ? GO:0003735 ... P53292 38199006
    797435 8om3:A (2.87) BS01 rna ? GO:0003735 ... Q02950 38199006
    797436 8om3:B (2.87) BS01 rna ? GO:0003735 ... P32902 38199006
    797437 8om3:B (2.87) BS02 MG ? GO:0003735 ... P32902 38199006
    797438 8om3:C (2.87) BS01 rna ? GO:0003735 ... P02381 38199006
    797439 8om3:D (2.87) BS01 rna ? GO:0003723 ... P27929 38199006
    797440 8om3:E (2.87) BS01 rna ? GO:0003723 ... P33759 38199006
    797441 8om3:F (2.87) BS01 rna ? GO:0003735 ... P28778 38199006
    797442 8om3:G (2.87) BS01 rna ? GO:0000028 ... P47150 38199006
    797443 8om3:H (2.87) BS01 rna ? GO:0003735 ... Q03799 38199006
    797444 8om3:I (2.87) BS01 rna ? GO:0003723 ... P38120 38199006
    797445 8om3:J (2.87) BS01 rna ? GO:0003735 ... Q03201 38199006
    797446 8om3:K (2.87) BS01 rna ? GO:0003735 ... P42847 38199006
    797447 8om3:L (2.87) BS01 rna ? GO:0003735 ... P53732 38199006
    797448 8om3:M (2.87) BS01 rna ? GO:0003676 ... P53937 38199006
    797449 8om3:N (2.87) BS01 rna ? GO:0003735 ... P10663 38199006
    797450 8om3:O (2.87) BS01 rna ? GO:0003735 ... P21771 38199006
    797451 8om3:P (2.87) BS01 rna ? GO:0003735 ... Q02608 38199006
    797452 8om3:Q (2.87) BS01 rna ? GO:0003735 ... Q03246 38199006
    797453 8om3:R (2.87) BS01 rna ? GO:0003735 ... P40033 38199006
    797454 8om3:S (2.87) BS01 rna ? GO:0000028 ... P53733 38199006
    797455 8om3:T (2.87) BS01 rna ? GO:0003735 ... P38175 38199006
    797456 8om3:U (2.87) BS01 rna ? GO:0003735 ... P40496 38199006
    797457 8om3:V (2.87) BS01 rna ? GO:0003735 ... P17558 38199006
    797458 8om3:W (2.87) BS01 rna ? GO:0003735 ... Q01163 38199006
    797459 8om3:W (2.87) BS02 ATP ? GO:0003735 ... Q01163 38199006
    797460 8om3:X (2.87) BS01 rna ? GO:0003735 ... P53305 38199006
    797461 8om3:Y (2.87) BS01 rna ? GO:0003735 ... Q03976 38199006
    797462 8om3:Z (2.87) BS01 rna ? GO:0003735 ... O75012 38199006
    797463 8om3:d (2.87) BS01 rna ? GO:0003743 ... P47015 38199006
    797464 8om4:1 (2.32) BS01 rna ? GO:0003735 ... P32344 38199006
    797465 8om4:2 (2.32) BS01 rna ? GO:0003735 ... P38783 38199006
    797466 8om4:3 (2.32) BS01 rna ? GO:0003735 ... P47141 38199006
    797467 8om4:5 (2.32) BS01 rna ? GO:0003735 ... P12686 38199006
    797468 8om4:6 (2.32) BS01 rna ? GO:0003735 ... P53292 38199006
    797469 8om4:A (2.32) BS01 rna ? GO:0003735 ... Q02950 38199006
    797470 8om4:B (2.32) BS01 rna ? GO:0003735 ... P32902 38199006
    797471 8om4:B (2.32) BS02 MG ? GO:0003735 ... P32902 38199006
    797472 8om4:C (2.32) BS01 rna ? GO:0003735 ... P02381 38199006
    797473 8om4:D (2.32) BS01 rna ? GO:0003723 ... P27929 38199006
    797474 8om4:E (2.32) BS01 rna ? GO:0003723 ... P33759 38199006
    797475 8om4:F (2.32) BS01 rna ? GO:0003735 ... P28778 38199006
    797476 8om4:G (2.32) BS01 rna ? GO:0000028 ... P47150 38199006
    797477 8om4:H (2.32) BS01 rna ? GO:0003735 ... Q03799 38199006
    797478 8om4:I (2.32) BS01 rna ? GO:0003723 ... P38120 38199006
    797479 8om4:J (2.32) BS01 rna ? GO:0003735 ... Q03201 38199006
    797480 8om4:K (2.32) BS01 rna ? GO:0003735 ... P42847 38199006
    797481 8om4:L (2.32) BS01 rna ? GO:0003735 ... P53732 38199006
    797482 8om4:M (2.32) BS01 rna ? GO:0003676 ... P53937 38199006
    797483 8om4:N (2.32) BS01 rna ? GO:0003735 ... P10663 38199006
    797484 8om4:O (2.32) BS01 rna ? GO:0003735 ... P21771 38199006
    797485 8om4:P (2.32) BS01 rna ? GO:0003735 ... Q02608 38199006
    797486 8om4:Q (2.32) BS01 rna ? GO:0003735 ... Q03246 38199006
    797487 8om4:R (2.32) BS01 rna ? GO:0003735 ... P40033 38199006
    797488 8om4:S (2.32) BS01 rna ? GO:0000028 ... P53733 38199006
    797489 8om4:T (2.32) BS01 rna ? GO:0003735 ... P38175 38199006
    797490 8om4:U (2.32) BS01 rna ? GO:0003735 ... P40496 38199006
    797491 8om4:V (2.32) BS01 rna ? GO:0003735 ... P17558 38199006
    797492 8om4:W (2.32) BS01 rna ? GO:0003735 ... Q01163 38199006
    797493 8om4:W (2.32) BS02 ATP ? GO:0003735 ... Q01163 38199006
    797494 8om4:X (2.32) BS01 rna ? GO:0003735 ... P53305 38199006
    797495 8om4:Y (2.32) BS01 rna ? GO:0003735 ... Q03976 38199006
    797496 8om4:Z (2.32) BS01 rna ? GO:0003735 ... O75012 38199006
    797497 8om5:A (3.52) BS01 ADP ? GO:0000287 ... P43246 N/A
    797498 8om5:A (3.52) BS02 MG ? GO:0000287 ... P43246 N/A
    797499 8om5:B (3.52) BS01 ADP ? GO:0003677 ... P20585 N/A
    797500 8om5:B (3.52) BS02 MG ? GO:0003677 ... P20585 N/A
    797501 8om7:A (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797502 8om7:B (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797503 8om7:C (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797504 8om7:D (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797505 8om7:E (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797506 8om7:F (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797507 8om8:AAA (1.08) BS01 VSU 3.2.1.17 GO:0003796 ... P00698 37195003
    797508 8om8:AAA (1.08) BS02 VTZ 3.2.1.17 GO:0003796 ... P00698 37195003
    797509 8om9:A (3.32) BS01 ADP ? GO:0000287 ... P43246 N/A
    797510 8om9:B (3.32) BS01 dna ? GO:0003677 ... P20585 N/A
    797511 8om9:B (3.32) BS02 dna ? GO:0003677 ... P20585 N/A
    797512 8om9:B (3.32) BS03 ADP ? GO:0003677 ... P20585 N/A
    797513 8oma:A (3.29) BS01 dna ? GO:0000287 ... P43246 N/A
    797514 8oma:A (3.29) BS02 dna ? GO:0000287 ... P43246 N/A
    797515 8oma:A (3.29) BS03 ATP ? GO:0000287 ... P43246 N/A
    797516 8oma:A (3.29) BS04 ATP ? GO:0000287 ... P43246 N/A
    797517 8oma:B (3.29) BS01 ATP ? GO:0003677 ... P20585 N/A
    797518 8oma:B (3.29) BS02 ATP ? GO:0003677 ... P20585 N/A
    797519 8oma:B (3.29) BS03 MG ? GO:0003677 ... P20585 N/A
    797520 8omb:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797521 8omb:A (1.35) BS02 VRN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797522 8omc:A (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    797523 8omc:B (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    797524 8omd:A (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797525 8omd:A (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797526 8omd:B (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797527 8omd:B (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797528 8omd:C (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797529 8omd:C (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797530 8omd:D (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    797531 8ome:A (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797532 8ome:A (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797533 8ome:B (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797534 8ome:B (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797535 8ome:C (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797536 8ome:C (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797537 8ome:D (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797538 8ome:D (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797539 8omf:A (2.14) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797540 8omf:B (2.14) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    797541 8omh:A (1.45) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797542 8omh:A (1.45) BS02 VS9 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797543 8omi:A (1.77) BS01 ATP 2.7.-.- GO:0000828 ... C4M387 37843983
    797544 8omk:A (2.48) BS01 F1X 2.7.1.3 GO:0004454 ... P50053 39179180
    797545 8omk:A (2.48) BS02 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    797546 8omk:B (2.48) BS01 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    797547 8omm:A (2.15) BS01 HT9 4.99.1.9 GO:0004325 ... A0A3T2BSC5 37743577
    797548 8omm:A (2.15) BS02 FE2 4.99.1.9 GO:0004325 ... A0A3T2BSC5 37743577
    797549 8omn:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797550 8omn:A (1.4) BS02 A1H69 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797551 8omo:A (3.43) BS01 ATP ? GO:0000287 ... P43246 N/A
    797552 8omo:A (3.43) BS02 MG ? GO:0000287 ... P43246 N/A
    797553 8omo:A (3.43) BS03 ATP ? GO:0000287 ... P43246 N/A
    797554 8omo:B (3.43) BS01 ATP ? GO:0003677 ... P20585 N/A
    797555 8omo:B (3.43) BS02 ATP ? GO:0003677 ... P20585 N/A
    797556 8omo:B (3.43) BS03 MG ? GO:0003677 ... P20585 N/A
    797557 8omp:A (1.41) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797558 8omp:A (1.41) BS02 VQW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    797559 8omq:A (3.11) BS01 ATP ? GO:0000287 ... P43246 N/A
    797560 8omq:A (3.11) BS02 ATP ? GO:0000287 ... P43246 N/A
    797561 8omq:A (3.11) BS03 MG ? GO:0000287 ... P43246 N/A
    797562 8omq:B (3.11) BS01 ATP ? GO:0003677 ... P20585 N/A
    797563 8omq:B (3.11) BS02 MG ? GO:0003677 ... P20585 N/A
    797564 8omq:B (3.11) BS03 ATP ? GO:0003677 ... P20585 N/A
    797565 8omr:A (3.3) BS01 rna 2.4.2.64 GO:0005515 ... Q9BXR0 38181786
    797566 8omr:A (3.3) BS02 ZN 2.4.2.64 GO:0005515 ... Q9BXR0 38181786
    797567 8omr:A (3.3) BS03 9DG 2.4.2.64 GO:0005515 ... Q9BXR0 38181786
    797568 8omr:B (3.3) BS01 rna ? GO:0000049 ... Q9H974 38181786
    797569 8omr:B (3.3) BS02 ZN ? GO:0000049 ... Q9H974 38181786
    797570 8oms:AAA (1.1) BS01 VTU 3.2.1.17 GO:0003796 ... P00698 37195003
    797571 8omt:AAA (1.097) BS01 VTU 3.2.1.17 GO:0003796 ... P00698 37195003
    797572 8omt:AAA (1.097) BS02 VTZ 3.2.1.17 GO:0003796 ... P00698 37195003
    797573 8omx:X (1.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797574 8omx:X (1.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797575 8omx:X (1.5) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797576 8omx:X (1.5) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797577 8omy:X (1.37) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797578 8omy:X (1.37) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797579 8omy:X (1.37) BS03 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797580 8omy:X (1.37) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797581 8omy:X (1.37) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797582 8omy:X (1.37) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797583 8omz:A (3.5) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    797584 8omz:A (3.5) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    797585 8omz:A (3.5) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    797586 8omz:C (3.5) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    797587 8omz:C (3.5) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    797588 8on0:X (1.29) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797589 8on0:X (1.29) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797590 8on0:X (1.29) BS03 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797591 8on0:X (1.29) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797592 8on0:X (1.29) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797593 8on0:X (1.29) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797594 8on1:X (1.37) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797595 8on1:X (1.37) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797596 8on1:X (1.37) BS03 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797597 8on1:X (1.37) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797598 8on1:X (1.37) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797599 8on1:X (1.37) BS06 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    797600 8on2:X (1.58) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218