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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    797001 8oj0:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38383785
    797002 8oj0:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38383785
    797003 8oj0:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38383785
    797004 8oj0:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38383785
    797005 8oj0:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38383785
    797006 8oj0:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38383785
    797007 8oj0:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38383785
    797008 8oj0:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38383785
    797009 8oj0:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38383785
    797010 8oj0:Lo (3.3) BS02 ZN ? GO:0002181 ... P83881 38383785
    797011 8oj0:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38383785
    797012 8oj0:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38383785
    797013 8oj0:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38383785
    797014 8oj0:Lz (3.3) BS01 rna ? GO:0002181 ... P62906 38383785
    797015 8oj1:A (2.57) BS01 dna ? GO:0003677 ... A0A0G3FH20 N/A
    797016 8oj2:A (2.56) BS01 dna ? GO:0003677 ... A0A176WDW1 N/A
    797017 8oj5:A (2.9) BS01 rna 2.3.2.- GO:0000077 ... O94874 38383785
    797018 8oj5:B (2.9) BS01 rna ? GO:0000079 ... Q96JB5 38383785
    797019 8oj5:C (2.9) BS01 rna ? GO:0005515 ... Q96HY6 38383785
    797020 8oj5:LA (2.9) BS01 rna ? GO:0002181 ... P62917 38383785
    797021 8oj5:LB (2.9) BS01 rna ? GO:0002181 ... P39023 38383785
    797022 8oj5:LC (2.9) BS01 rna ? GO:0002181 ... P36578 38383785
    797023 8oj5:LC (2.9) BS02 rna ? GO:0002181 ... P36578 38383785
    797024 8oj5:LD (2.9) BS01 rna ? GO:0000027 ... P46777 38383785
    797025 8oj5:LD (2.9) BS02 rna ? GO:0000027 ... P46777 38383785
    797026 8oj5:LE (2.9) BS01 rna ? GO:0000027 ... Q02878 38383785
    797027 8oj5:LF (2.9) BS01 rna ? GO:0000463 ... P18124 38383785
    797028 8oj5:LF (2.9) BS02 rna ? GO:0000463 ... P18124 38383785
    797029 8oj5:LG (2.9) BS01 rna ? GO:0000470 ... P62424 38383785
    797030 8oj5:LG (2.9) BS02 rna ? GO:0000470 ... P62424 38383785
    797031 8oj5:LH (2.9) BS01 rna ? GO:0002181 ... P32969 38383785
    797032 8oj5:LI (2.9) BS01 rna ? GO:0000027 ... Q96L21 38383785
    797033 8oj5:LI (2.9) BS02 rna ? GO:0000027 ... Q96L21 38383785
    797034 8oj5:LJ (2.9) BS01 rna ? GO:0000027 ... P62913 38383785
    797035 8oj5:LJ (2.9) BS02 rna ? GO:0000027 ... P62913 38383785
    797036 8oj5:LL (2.9) BS01 rna ? GO:0001824 ... P26373 38383785
    797037 8oj5:LL (2.9) BS02 rna ? GO:0001824 ... P26373 38383785
    797038 8oj5:LM (2.9) BS01 rna ? GO:0002181 ... P50914 38383785
    797039 8oj5:LN (2.9) BS01 rna ? GO:0002181 ... P61313 38383785
    797040 8oj5:LN (2.9) BS02 rna ? GO:0002181 ... P61313 38383785
    797041 8oj5:LO (2.9) BS01 rna ? GO:0002181 ... P40429 38383785
    797042 8oj5:LP (2.9) BS01 rna ? GO:0002181 ... P18621 38383785
    797043 8oj5:LP (2.9) BS02 rna ? GO:0002181 ... P18621 38383785
    797044 8oj5:LQ (2.9) BS01 rna ? GO:0002181 ... Q07020 38383785
    797045 8oj5:LR (2.9) BS01 rna ? GO:0002181 ... P84098 38383785
    797046 8oj5:LS (2.9) BS01 rna ? GO:0002181 ... Q02543 38383785
    797047 8oj5:LS (2.9) BS02 rna ? GO:0002181 ... Q02543 38383785
    797048 8oj5:LT (2.9) BS01 rna ? GO:0002181 ... P46778 38383785
    797049 8oj5:LT (2.9) BS02 rna ? GO:0002181 ... P46778 38383785
    797050 8oj5:LU (2.9) BS01 rna ? GO:0002181 ... P35268 38383785
    797051 8oj5:LV (2.9) BS01 rna ? GO:0000122 ... P62829 38383785
    797052 8oj5:LW (2.9) BS01 rna ? GO:0000027 ... P83731 38383785
    797053 8oj5:LX (2.9) BS01 rna ? GO:0000027 ... P62750 38383785
    797054 8oj5:LX (2.9) BS02 rna ? GO:0000027 ... P62750 38383785
    797055 8oj5:LY (2.9) BS01 rna ? GO:0002181 ... P61254 38383785
    797056 8oj5:LY (2.9) BS02 rna ? GO:0002181 ... P61254 38383785
    797057 8oj5:LZ (2.9) BS01 rna ? GO:0002181 ... P61353 38383785
    797058 8oj5:La (2.9) BS01 rna ? GO:0002181 ... P46776 38383785
    797059 8oj5:Lb (2.9) BS01 rna ? GO:0002181 ... P47914 38383785
    797060 8oj5:Lc (2.9) BS01 rna ? GO:0002181 ... P62888 38383785
    797061 8oj5:Ld (2.9) BS01 rna ? GO:0002181 ... P62899 38383785
    797062 8oj5:Le (2.9) BS01 rna ? GO:0002181 ... P62910 38383785
    797063 8oj5:Lf (2.9) BS01 rna ? GO:0000049 ... P18077 38383785
    797064 8oj5:Lg (2.9) BS01 rna ? GO:0002181 ... P49207 38383785
    797065 8oj5:Lg (2.9) BS02 ZN ? GO:0002181 ... P49207 38383785
    797066 8oj5:Lh (2.9) BS01 rna ? GO:0000463 ... P42766 38383785
    797067 8oj5:Lh (2.9) BS02 rna ? GO:0000463 ... P42766 38383785
    797068 8oj5:Li (2.9) BS01 rna ? GO:0002181 ... Q9Y3U8 38383785
    797069 8oj5:Lj (2.9) BS01 rna ? GO:0002181 ... P61927 38383785
    797070 8oj5:Lj (2.9) BS02 rna ? GO:0002181 ... P61927 38383785
    797071 8oj5:Lj (2.9) BS03 ZN ? GO:0002181 ... P61927 38383785
    797072 8oj5:Lk (2.9) BS01 rna ? GO:0001501 ... P63173 38383785
    797073 8oj5:Ll (2.9) BS01 rna ? GO:0002181 ... P62891 38383785
    797074 8oj5:Ll (2.9) BS02 rna ? GO:0002181 ... P62891 38383785
    797075 8oj5:Lm (2.9) BS01 rna ? GO:0002181 ... P62987 38383785
    797076 8oj5:Lm (2.9) BS02 ZN ? GO:0002181 ... P62987 38383785
    797077 8oj5:Lo (2.9) BS01 rna ? GO:0002181 ... P83881 38383785
    797078 8oj5:Lo (2.9) BS02 ZN ? GO:0002181 ... P83881 38383785
    797079 8oj5:Lp (2.9) BS01 rna ? GO:0002181 ... P61513 38383785
    797080 8oj5:Lp (2.9) BS02 ZN ? GO:0002181 ... P61513 38383785
    797081 8oj5:Lr (2.9) BS01 rna ? GO:0002181 ... P46779 38383785
    797082 8oj5:Lz (2.9) BS01 rna ? GO:0002181 ... P62906 38383785
    797083 8oj6:A (2.41) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797084 8oj6:A (2.41) BS02 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797085 8oj6:A (2.41) BS03 MG 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797086 8oj6:B (2.41) BS01 dna ? GO:0003677 ... P10226 38806233
    797087 8oj7:A (2.46) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797088 8oj7:A (2.46) BS02 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797089 8oj7:A (2.46) BS03 MG 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797090 8oj7:A (2.46) BS04 DTP 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797091 8oj7:B (2.46) BS01 dna ? GO:0003677 ... P10226 38806233
    797092 8oj8:1 (3.3) BS01 peptide ? GO:0005048 ... P38377 38383785
    797093 8oj8:1 (3.3) BS02 rna ? GO:0005048 ... P38377 38383785
    797094 8oj8:A (3.3) BS01 rna 2.3.2.- GO:0000077 ... O94874 38383785
    797095 8oj8:K (3.3) BS01 rna ? GO:0000054 ... P56537 38383785
    797096 8oj8:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38383785
    797097 8oj8:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38383785
    797098 8oj8:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38383785
    797099 8oj8:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38383785
    797100 8oj8:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38383785
    797101 8oj8:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38383785
    797102 8oj8:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38383785
    797103 8oj8:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38383785
    797104 8oj8:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38383785
    797105 8oj8:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38383785
    797106 8oj8:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38383785
    797107 8oj8:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38383785
    797108 8oj8:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38383785
    797109 8oj8:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38383785
    797110 8oj8:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38383785
    797111 8oj8:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38383785
    797112 8oj8:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38383785
    797113 8oj8:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38383785
    797114 8oj8:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38383785
    797115 8oj8:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38383785
    797116 8oj8:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38383785
    797117 8oj8:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38383785
    797118 8oj8:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38383785
    797119 8oj8:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38383785
    797120 8oj8:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38383785
    797121 8oj8:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38383785
    797122 8oj8:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38383785
    797123 8oj8:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38383785
    797124 8oj8:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38383785
    797125 8oj8:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38383785
    797126 8oj8:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38383785
    797127 8oj8:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38383785
    797128 8oj8:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38383785
    797129 8oj8:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38383785
    797130 8oj8:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38383785
    797131 8oj8:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38383785
    797132 8oj8:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38383785
    797133 8oj8:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38383785
    797134 8oj8:La (3.3) BS01 rna ? GO:0002181 ... P46776 38383785
    797135 8oj8:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38383785
    797136 8oj8:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38383785
    797137 8oj8:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38383785
    797138 8oj8:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38383785
    797139 8oj8:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38383785
    797140 8oj8:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38383785
    797141 8oj8:Lg (3.3) BS02 ZN ? GO:0002181 ... P49207 38383785
    797142 8oj8:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38383785
    797143 8oj8:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38383785
    797144 8oj8:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38383785
    797145 8oj8:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38383785
    797146 8oj8:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38383785
    797147 8oj8:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38383785
    797148 8oj8:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38383785
    797149 8oj8:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38383785
    797150 8oj8:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38383785
    797151 8oj8:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38383785
    797152 8oj8:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38383785
    797153 8oj8:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38383785
    797154 8oj8:Lo (3.3) BS02 ZN ? GO:0002181 ... P83881 38383785
    797155 8oj8:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38383785
    797156 8oj8:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38383785
    797157 8oj8:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38383785
    797158 8oj8:Lz (3.3) BS01 rna ? GO:0002181 ... P62906 38383785
    797159 8oja:A (1.87) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797160 8oja:A (1.87) BS02 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797161 8oja:A (1.87) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797162 8oja:A (1.87) BS04 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797163 8oja:B (1.87) BS01 dna ? GO:0003677 ... P10226 38806233
    797164 8ojb:A (1.9) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797165 8ojb:A (1.9) BS02 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797166 8ojb:A (1.9) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797167 8ojc:A (2.08) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797168 8ojc:A (2.08) BS02 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797169 8ojc:A (2.08) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797170 8ojd:A (2.46) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797171 8ojd:A (2.46) BS02 dna 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797172 8ojd:A (2.46) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    797173 8ojh:B (2.72) BS01 ZN ? GO:0005515 ... Q96SW2 37418539
    797174 8ojh:B (2.72) BS02 VP9 ? GO:0005515 ... Q96SW2 37418539
    797175 8oji:A (1.75) BS01 YIO ? GO:0030246 ... P17931 37658813
    797176 8oji:A (1.75) BS02 VPH ? GO:0030246 ... P17931 37658813
    797177 8ojk:A (1.8) BS01 YIO ? GO:0030246 ... P17931 37658813
    797178 8ojk:A (1.8) BS02 VPL ? GO:0030246 ... P17931 37658813
    797179 8ojl:A (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797180 8ojl:B (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797181 8ojl:C (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797182 8ojl:D (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797183 8ojl:E (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797184 8ojl:F (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    797185 8ojm:A (1.8) BS01 VPQ ? GO:0030246 ... P17931 37658813
    797186 8ojm:A (1.8) BS02 YIO ? GO:0030246 ... P17931 37658813
    797187 8ojm:A (1.8) BS03 MG ? GO:0030246 ... P17931 37658813
    797188 8ojm:A (1.8) BS04 MG ? GO:0030246 ... P17931 37658813
    797189 8ojo:A (1.8) BS01 MG ? GO:0030246 ... P17931 37658813
    797190 8ojo:A (1.8) BS02 AH2 ? GO:0030246 ... P17931 37658813
    797191 8ojo:A (1.8) BS03 YIO ? GO:0030246 ... P17931 37658813
    797192 8ojp:A (1.71) BS01 VPZ ? GO:0002317 ... P09382 38059452
    797193 8ojp:B (1.71) BS01 VPZ ? GO:0002317 ... P09382 38059452
    797194 8ojw:A (1.484) BS01 0OD ? GO:0009374 ... P22629 N/A
    797195 8ojx:A (1.6) BS01 0OD ? GO:0009374 ... P22629 N/A
    797196 8ok0:A (1.6) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37726177
    797197 8ok0:B (1.6) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37726177
    797198 8ok0:C (1.6) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37726177
    797199 8ok0:D (1.6) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 37726177
    797200 8ok4:A (1.23) BS01 BMA ? GO:0005886 ... B3GVS7 37656766
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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