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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    795801 8ki0:A (1.45) BS01 MQP ? N/A Q4K5N8 38495978
    795802 8ki0:A (1.45) BS02 MQP ? N/A Q4K5N8 38495978
    795803 8ki0:B (1.45) BS01 MQP ? N/A Q4K5N8 38495978
    795804 8ki0:B (1.45) BS02 MQP ? N/A Q4K5N8 38495978
    795805 8ki1:A (1.9) BS01 HEM ? N/A Q4K5N8 38495978
    795806 8ki1:B (1.9) BS01 HEM ? N/A Q4K5N8 38495978
    795807 8ki3:4 (2.89) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    795808 8ki3:5 (2.89) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    795809 8ki3:A (2.89) BS01 ATP ? GO:0001937 ... P25705 38961288
    795810 8ki3:B (2.89) BS01 ATP ? GO:0001937 ... P25705 38961288
    795811 8ki3:C (2.89) BS01 ATP ? GO:0001937 ... P25705 38961288
    795812 8ki3:D (2.89) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 38961288
    795813 8ki3:E (2.89) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 38961288
    795814 8ki3:F (2.89) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 38961288
    795815 8kme:2 (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10089309
    795816 8kme:2 (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10089309
    795817 8kme:2 (2.1) BS03 peptide 3.4.21.5 GO:0004252 ... P00734 10089309
    795818 8lpr:A (2.25) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    795819 8mht:A (2.76) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    795820 8mht:A (2.76) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    795821 8mht:A (2.76) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    795822 8nse:A (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    795823 8nse:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    795824 8nse:A (2.25) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    795825 8nse:A (2.25) BS04 NRG 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=1200nM, Ki=750nM
    795826 8nse:A (2.25) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    795827 8nse:B (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    795828 8nse:B (2.25) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    795829 8nse:B (2.25) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    795830 8nse:B (2.25) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    795831 8nse:B (2.25) BS05 NRG 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=1200nM, Ki=750nM
    795832 8odo:A (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795833 8odo:A (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795834 8odo:B (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795835 8odo:C (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795836 8odo:C (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795837 8odo:D (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795838 8odo:E (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795839 8odo:E (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795840 8odo:F (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795841 8odo:G (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795842 8odo:G (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795843 8odo:H (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795844 8odp:A (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795845 8odp:A (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795846 8odp:A (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795847 8odp:B (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795848 8odp:C (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795849 8odp:C (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795850 8odp:C (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795851 8odp:D (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795852 8odp:E (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795853 8odp:E (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795854 8odp:E (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795855 8odp:F (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795856 8odp:G (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795857 8odp:G (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795858 8odp:G (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    795859 8odp:H (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    795860 8odq:A (1.65) BS01 ZN ? GO:0005506 ... O53156 37238602
    795861 8odq:B (1.65) BS01 PLP 2.8.1.7 GO:0005515 ... P9WQ69 37238602
    795862 8odq:C (1.65) BS01 ZN ? GO:0005506 ... O53156 37238602
    795863 8odq:D (1.65) BS01 PLP 2.8.1.7 GO:0005515 ... P9WQ69 37238602
    795864 8odt:A (4.2) BS01 peptide ? GO:0005515 ... P0ABU9 37972066
    795865 8odt:B (4.2) BS01 peptide ? GO:0005515 ... P0ABU9 37972066
    795866 8odt:C (4.2) BS01 peptide ? GO:0005515 ... P0ABU9 37972066
    795867 8odt:C (4.2) BS02 peptide ? GO:0005515 ... P0ABU9 37972066
    795868 8odt:D (4.2) BS01 peptide ? GO:0005515 ... P0ABU9 37972066
    795869 8odt:E (4.2) BS01 peptide ? GO:0005515 ... P0ABU9 37972066
    795870 8odu:A (5.0) BS01 ZN 3.6.-.- GO:0005524 ... G0SFE0 37963916
    795871 8odw:A (3.07) BS01 FAD 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    795872 8odw:A (3.07) BS02 NAP 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    795873 8odw:A (3.07) BS03 GEE 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    795874 8odw:B (3.07) BS01 FAD 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    795875 8odw:B (3.07) BS02 NAP 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    795876 8oed:A (1.37) BS01 BYN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    795877 8oed:A (1.37) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    795878 8oeg:A (1.89) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 37561958
    795879 8oeg:A (1.89) BS02 VL9 3.1.4.53 GO:0004114 ... Q07343 37561958
    795880 8oeh:A (1.77) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    795881 8oeh:A (1.77) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    795882 8oei:A (1.65) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    795883 8oej:A (8.0) BS01 dna ? GO:0000724 ... G8ZHS0 37087464
    795884 8oej:A (8.0) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    795885 8oej:B (8.0) BS01 dna ? GO:0000781 ... Q9V1Z1 37087464
    795886 8oej:D (8.0) BS01 dna ? GO:0000724 ... G8ZHS0 37087464
    795887 8oej:D (8.0) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    795888 8oej:H (8.0) BS01 dna ? GO:0000781 ... Q9V1Z1 37087464
    795889 8oel:A (8.2) BS01 dna ? GO:0000724 ... G8ZHS0 37087464
    795890 8oel:A (8.2) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    795891 8oel:B (8.2) BS01 dna ? GO:0000781 ... Q9V1Z1 37087464
    795892 8oel:D (8.2) BS01 dna ? GO:0000724 ... G8ZHS0 37087464
    795893 8oel:D (8.2) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    795894 8oel:H (8.2) BS01 dna ? GO:0000781 ... Q9V1Z1 37087464
    795895 8oem:A (1.7) BS01 FE2 ? GO:0006826 ... Q7V0T9 38489389
    795896 8oeo:A (1.3) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    795897 8oeo:A (1.3) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    795898 8oep:A (1.87) BS01 peptide 3.1.3.48 N/A P26045 37200868
    795899 8oep:C (1.87) BS01 peptide 3.1.3.48 N/A P26045 37200868
    795900 8oer:A (3.0) BS01 CA ? N/A Q9HC84 N/A
    795901 8oer:A (3.0) BS02 CA ? N/A Q9HC84 N/A
    795902 8oer:B (3.0) BS01 CA ? N/A Q9HC84 N/A
    795903 8oer:B (3.0) BS02 CA ? N/A Q9HC84 N/A
    795904 8oer:C (3.0) BS01 CA ? N/A Q9HC84 N/A
    795905 8oer:D (3.0) BS01 CA ? N/A Q9HC84 N/A
    795906 8oer:I (3.0) BS01 CA ? N/A Q9HC84 N/A
    795907 8oer:J (3.0) BS01 CA ? N/A Q9HC84 N/A
    795908 8oes:A (3.0) BS01 CA ? N/A Q9HC84 N/A
    795909 8oes:A (3.0) BS02 CA ? N/A Q9HC84 N/A
    795910 8oes:A (3.0) BS03 CA ? N/A Q9HC84 N/A
    795911 8oes:B (3.0) BS01 CA ? N/A Q9HC84 N/A
    795912 8oes:B (3.0) BS02 CA ? N/A Q9HC84 N/A
    795913 8oes:B (3.0) BS03 CA ? N/A Q9HC84 N/A
    795914 8oes:C (3.0) BS01 CA ? N/A Q9HC84 N/A
    795915 8oes:C (3.0) BS02 CA ? N/A Q9HC84 N/A
    795916 8oes:C (3.0) BS03 CA ? N/A Q9HC84 N/A
    795917 8oes:D (3.0) BS01 CA ? N/A Q9HC84 N/A
    795918 8oes:D (3.0) BS02 CA ? N/A Q9HC84 N/A
    795919 8oes:D (3.0) BS03 CA ? N/A Q9HC84 N/A
    795920 8oes:E (3.0) BS01 CA ? N/A Q9HC84 N/A
    795921 8oes:E (3.0) BS02 CA ? N/A Q9HC84 N/A
    795922 8oes:F (3.0) BS01 CA ? N/A Q9HC84 N/A
    795923 8oes:F (3.0) BS02 CA ? N/A Q9HC84 N/A
    795924 8oes:G (3.0) BS01 CA ? N/A Q9HC84 N/A
    795925 8oes:H (3.0) BS01 CA ? N/A Q9HC84 N/A
    795926 8oes:I (3.0) BS01 CA ? N/A Q9HC84 N/A
    795927 8oes:J (3.0) BS01 CA ? N/A Q9HC84 N/A
    795928 8oes:K (3.0) BS01 CA ? N/A Q9HC84 N/A
    795929 8oes:L (3.0) BS01 CA ? N/A Q9HC84 N/A
    795930 8oes:M (3.0) BS01 CA ? N/A Q9HC84 N/A
    795931 8oes:N (3.0) BS01 CA ? N/A Q9HC84 N/A
    795932 8oet:A (2.11) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    795933 8oet:A (2.11) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    795934 8oet:A (2.11) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    795935 8oet:B (2.11) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    795936 8oet:B (2.11) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    795937 8oet:B (2.11) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    795938 8oeu:A (3.04) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795939 8oeu:A (3.04) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795940 8oeu:A (3.04) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795941 8oeu:A (3.04) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795942 8oeu:A (3.04) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795943 8oeu:A (3.04) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795944 8oeu:B (3.04) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795945 8oeu:B (3.04) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795946 8oeu:B (3.04) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795947 8oeu:C (3.04) BS01 ZN ? GO:0000428 ... I3LCH3 37932450
    795948 8oeu:E (3.04) BS01 dna ? GO:0001054 ... I3LSI7 37932450
    795949 8oeu:I (3.04) BS01 ZN ? GO:0000428 ... P60899 37932450
    795950 8oeu:I (3.04) BS02 ZN ? GO:0000428 ... P60899 37932450
    795951 8oeu:J (3.04) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 37932450
    795952 8oeu:L (3.04) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 37932450
    795953 8oev:A (2.86) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795954 8oev:A (2.86) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795955 8oev:A (2.86) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795956 8oev:A (2.86) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795957 8oev:A (2.86) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795958 8oev:A (2.86) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795959 8oev:B (2.86) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795960 8oev:B (2.86) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795961 8oev:B (2.86) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795962 8oev:C (2.86) BS01 ZN ? GO:0000428 ... I3LCH3 37932450
    795963 8oev:E (2.86) BS01 dna ? GO:0001054 ... I3LSI7 37932450
    795964 8oev:I (2.86) BS01 ZN ? GO:0000428 ... P60899 37932450
    795965 8oev:I (2.86) BS02 ZN ? GO:0000428 ... P60899 37932450
    795966 8oev:J (2.86) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 37932450
    795967 8oev:L (2.86) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 37932450
    795968 8oew:A (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795969 8oew:A (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795970 8oew:A (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795971 8oew:A (2.8) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795972 8oew:A (2.8) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795973 8oew:A (2.8) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795974 8oew:B (2.8) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795975 8oew:B (2.8) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795976 8oew:B (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795977 8oew:C (2.8) BS01 ZN ? GO:0000428 ... I3LCH3 37932450
    795978 8oew:E (2.8) BS01 dna ? GO:0001054 ... I3LSI7 37932450
    795979 8oew:I (2.8) BS01 ZN ? GO:0000428 ... P60899 37932450
    795980 8oew:I (2.8) BS02 ZN ? GO:0000428 ... P60899 37932450
    795981 8oew:J (2.8) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 37932450
    795982 8oew:L (2.8) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 37932450
    795983 8of0:A (3.05) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795984 8of0:A (3.05) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795985 8of0:A (3.05) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795986 8of0:A (3.05) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795987 8of0:A (3.05) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795988 8of0:A (3.05) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    795989 8of0:B (3.05) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795990 8of0:B (3.05) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795991 8of0:B (3.05) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37932450
    795992 8of0:C (3.05) BS01 ZN ? GO:0000428 ... I3LCH3 37932450
    795993 8of0:E (3.05) BS01 dna ? GO:0001054 ... I3LSI7 37932450
    795994 8of0:I (3.05) BS01 ZN ? GO:0000428 ... P60899 37932450
    795995 8of0:I (3.05) BS02 ZN ? GO:0000428 ... P60899 37932450
    795996 8of0:J (3.05) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 37932450
    795997 8of0:L (3.05) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 37932450
    795998 8of1:A (1.81) BS01 NAD 1.2.1.24 GO:0000166 ... A0A2K1ICJ7 N/A
    795999 8of1:B (1.81) BS01 NAD 1.2.1.24 GO:0000166 ... A0A2K1ICJ7 N/A
    796000 8of2:A (1.48) BS01 3AY 1.5.1.33 GO:0016491 ... Q581W1 38043491
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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