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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    793801 8jpz:B (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    793802 8jq3:A (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793803 8jq3:A (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793804 8jq3:B (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793805 8jq3:B (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793806 8jq3:C (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793807 8jq3:C (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793808 8jq3:D (1.9) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793809 8jq3:D (1.9) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793810 8jq4:A (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793811 8jq4:A (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793812 8jq4:A (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793813 8jq4:A (1.61) BS04 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793814 8jq4:B (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793815 8jq4:B (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793816 8jq4:B (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793817 8jq4:C (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793818 8jq4:C (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793819 8jq4:C (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793820 8jq4:D (1.61) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793821 8jq4:D (1.61) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793822 8jq4:D (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793823 8jq4:D (1.61) BS04 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793824 8jq4:D (1.61) BS05 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793825 8jq5:A (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793826 8jq5:A (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793827 8jq5:A (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793828 8jq5:A (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793829 8jq5:B (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793830 8jq5:B (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793831 8jq5:B (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793832 8jq5:C (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793833 8jq5:C (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793834 8jq5:C (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793835 8jq5:C (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793836 8jq5:C (1.73) BS05 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793837 8jq5:D (1.73) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793838 8jq5:D (1.73) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793839 8jq5:D (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793840 8jq5:D (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793841 8jq6:A (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793842 8jq6:A (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793843 8jq6:A (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793844 8jq6:A (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793845 8jq6:B (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793846 8jq6:B (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793847 8jq6:B (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793848 8jq6:C (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793849 8jq6:C (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793850 8jq6:C (1.71) BS03 AFD 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793851 8jq6:D (1.71) BS01 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793852 8jq6:D (1.71) BS02 MN 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793853 8jq6:D (1.71) BS03 AFD 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793854 8jq6:D (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793855 8jq6:D (1.71) BS05 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    793856 8jqe:A (2.31) BS01 MN ? GO:0005975 ... G0J5L4 38141024
    793857 8jqe:B (2.31) BS01 MN ? GO:0005975 ... G0J5L4 38141024
    793858 8jqz:A (3.05) BS01 GNP ? GO:0003924 ... U5NFV2 37705969
    793859 8jqz:B (3.05) BS01 GNP ? GO:0003924 ... U5NFV2 37705969
    793860 8jr0:1 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793861 8jr0:2 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793862 8jr0:4 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793863 8jr0:5 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793864 8jr0:5 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793865 8jr0:6 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793866 8jr0:6 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793867 8jr0:7 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793868 8jr0:7 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793869 8jr0:8 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793870 8jr0:8 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793871 8jr0:9 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793872 8jr0:9 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793873 8jr0:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    793874 8jr0:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    793875 8jr0:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    793876 8jr0:C (2.8) BS02 ADP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    793877 8jr0:D (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    793878 8jr0:F (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    793879 8jr0:F (2.8) BS02 MG 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    793880 8jr0:a (2.8) BS01 UTI ? GO:0005886 ... P9WPV7 38961288
    793881 8jr1:1 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793882 8jr1:2 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793883 8jr1:4 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793884 8jr1:5 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793885 8jr1:5 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793886 8jr1:6 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793887 8jr1:7 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793888 8jr1:7 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793889 8jr1:8 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793890 8jr1:8 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793891 8jr1:9 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    793892 8jr1:9 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    793893 8jr1:a (3.17) BS01 UTI ? GO:0005886 ... P9WPV7 38961288
    793894 8jr9:A (2.57) BS01 KHF ? GO:0003924 ... P63092
    P63096
    37524305
    793895 8jr9:R (2.57) BS01 KHF ? GO:0004888 ... Q03431 37524305
    793896 8jrl:A (2.07) BS01 HEM ? GO:0004497 ... A0A077KEB8 N/A
    793897 8jrl:A (2.07) BS02 V3X ? GO:0004497 ... A0A077KEB8 N/A
    793898 8jrn:B (2.6) BS01 ZN ? GO:0003677 ... P03126 38670961
    793899 8jrn:B (2.6) BS02 ZN ? GO:0003677 ... P03126 38670961
    793900 8jrn:D (2.6) BS01 ZN ? GO:0003677 ... P03126 38670961
    793901 8jrn:D (2.6) BS02 ZN ? GO:0003677 ... P03126 38670961
    793902 8jro:B (3.01) BS01 ZN ? GO:0003677 ... P03126 38670961
    793903 8jro:B (3.01) BS02 ZN ? GO:0003677 ... P03126 38670961
    793904 8jro:D (3.01) BS01 ZN ? GO:0003677 ... P03126 38670961
    793905 8jro:D (3.01) BS02 ZN ? GO:0003677 ... P03126 38670961
    793906 8jrp:B (3.58) BS01 ZN ? N/A P03126 38670961
    793907 8jrp:B (3.58) BS02 ZN ? N/A P03126 38670961
    793908 8jrp:D (3.58) BS01 ZN ? N/A P03126 38670961
    793909 8jrp:D (3.58) BS02 ZN ? N/A P03126 38670961
    793910 8jrq:B (4.15) BS01 ZN ? GO:0003677 ... P03126 38670961
    793911 8jrq:B (4.15) BS02 ZN ? GO:0003677 ... P03126 38670961
    793912 8jrq:D (4.15) BS01 ZN ? GO:0003677 ... P03126 38670961
    793913 8jrq:D (4.15) BS02 ZN ? GO:0003677 ... P03126 38670961
    793914 8jrr:B (4.35) BS01 ZN ? N/A P03126 38670961
    793915 8jrr:D (4.35) BS01 ZN ? N/A P03126 38670961
    793916 8jru:R (3.5) BS01 PIO ?
    3.4.21.69
    GO:0004888 ... P03435
    P04070
    P30518
    P47871
    37558880
    793917 8jrv:A (3.3) BS01 PIO ? GO:0000139 ... P49407 37558880
    793918 8jrv:R (3.3) BS01 peptide ?
    3.4.21.69
    GO:0004888 ... P03435
    P04070
    P30518
    P47871
    37558880
    793919 8js8:A (2.88) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    793920 8js9:B (3.01) BS01 FUC ? GO:0005576 ... D2KCK3 38637505
    793921 8jsc:C (2.16) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 37739993
    793922 8jsc:C (2.16) BS02 NAP 1.6.5.- GO:0003677 ... Q9BRQ8 37739993
    793923 8jsg:1 (4.6) BS01 rna ? GO:0002181 ... P0A7T7 38148682
    793924 8jsg:2 (4.6) BS01 rna ? GO:0003735 ... P68679 38148682
    793925 8jsg:3 (4.6) BS01 rna ? GO:0000028 ... P0A7U7 38148682
    793926 8jsg:A (4.6) BS01 rna ? GO:0003723 ... P0A707 38148682
    793927 8jsg:P (4.6) BS01 rna ? GO:0000028 ... P0AG63 38148682
    793928 8jsg:h (4.6) BS01 rna ? GO:0003676 ... P0A7V3 38148682
    793929 8jsg:j (4.6) BS01 rna ? GO:0000028 ... P0A7V0 38148682
    793930 8jsg:k (4.6) BS01 rna ? GO:0000028 ... P0A7W1 38148682
    793931 8jsg:l (4.6) BS01 rna ? GO:0000028 ... P0A7V8 38148682
    793932 8jsg:m (4.6) BS01 rna ? GO:0003723 ... P02359 38148682
    793933 8jsg:n (4.6) BS01 rna ? GO:0003735 ... P02358 38148682
    793934 8jsg:o (4.6) BS01 rna ? GO:0000049 ... P0A7X3 38148682
    793935 8jsg:p (4.6) BS01 rna ? GO:0000028 ... P0A7W7 38148682
    793936 8jsg:q (4.6) BS01 rna ? GO:0002181 ... P0A7R9 38148682
    793937 8jsg:r (4.6) BS01 rna ? GO:0000049 ... P0A7R5 38148682
    793938 8jsg:s (4.6) BS01 rna ? GO:0000049 ... P0A7S9 38148682
    793939 8jsg:t (4.6) BS01 rna ? GO:0000049 ... P0A7S3 38148682
    793940 8jsg:u (4.6) BS01 rna ? GO:0000028 ... P0ADZ4 38148682
    793941 8jsg:w (4.6) BS01 rna ? GO:0000028 ... P0AG59 38148682
    793942 8jsg:y (4.6) BS01 rna ? GO:0000028 ... P0A7T3 38148682
    793943 8jsg:z (4.6) BS01 rna ? GO:0003723 ... P0A7U3 38148682
    793944 8jsh:1 (4.4) BS01 rna ? GO:0002181 ... P0A7T7 38148682
    793945 8jsh:2 (4.4) BS01 rna ? GO:0000028 ... P68679 38148682
    793946 8jsh:3 (4.4) BS01 rna ? GO:0000028 ... P0A7U7 38148682
    793947 8jsh:A (4.4) BS01 rna ? GO:0003743 ... C3T7P7 38148682
    793948 8jsh:P (4.4) BS01 rna ? GO:0000028 ... P0AG63 38148682
    793949 8jsh:k (4.4) BS01 rna ? GO:0000028 ... P0A7W1 38148682
    793950 8jsh:l (4.4) BS01 rna ? GO:0000028 ... P0A7V8 38148682
    793951 8jsh:n (4.4) BS01 rna ? GO:0002181 ... P02358 38148682
    793952 8jsh:p (4.4) BS01 rna ? GO:0000028 ... P0A7W7 38148682
    793953 8jsh:q (4.4) BS01 rna ? GO:0002181 ... P0A7R9 38148682
    793954 8jsh:t (4.4) BS01 rna ? GO:0000049 ... P0A7S3 38148682
    793955 8jsh:u (4.4) BS01 rna ? GO:0000028 ... P0ADZ4 38148682
    793956 8jsh:y (4.4) BS01 rna ? GO:0000028 ... P0A7T3 38148682
    793957 8jsl:A (2.95) BS01 rna 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    793958 8jsl:A (2.95) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    793959 8jsm:A (3.3) BS01 rna 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    793960 8jsm:A (3.3) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    793961 8jsn:A (3.4) BS01 rna 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    793962 8jsn:A (3.4) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... A0A1C4HDB0 37699521
    793963 8jso:R (3.4) BS01 1WE ? GO:0001594 ... P0ABE7
    Q96RJ0
    37935376
    793964 8jsp:R (3.65) BS01 UJL ? GO:0001586 ... P08908 37935376
    793965 8jsw:A (2.84) BS01 SRO ? GO:0016020 ... Q05940 38081299
    793966 8jsx:A (3.16) BS01 E5E ? GO:0016020 ... Q05940 N/A
    793967 8jt1:A (2.0) BS01 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793968 8jt1:A (2.0) BS02 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793969 8jt1:A (2.0) BS03 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793970 8jt1:A (2.0) BS04 ZN 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793971 8jt1:A (2.0) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793972 8jt1:A (2.0) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793973 8jt1:A (2.0) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793974 8jt1:A (2.0) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793975 8jt1:B (2.0) BS01 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793976 8jt1:B (2.0) BS02 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793977 8jt1:B (2.0) BS03 peptide 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793978 8jt1:B (2.0) BS04 ZN 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793979 8jt1:B (2.0) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793980 8jt1:B (2.0) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793981 8jt1:B (2.0) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793982 8jt1:B (2.0) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 37698340
    793983 8jt3:A (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793984 8jt3:A (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793985 8jt3:B (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793986 8jt3:B (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793987 8jt3:C (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793988 8jt3:C (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793989 8jt3:D (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793990 8jt3:D (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    793991 8jt5:A (3.06) BS01 HSM ? GO:0016020 ... Q05940 N/A
    793992 8jt6:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7
    38552625
    793993 8jt6:R (3.0) BS02 CLR ? GO:0001586 ... P08908
    P0ABE7
    38552625
    793994 8jt6:R (3.0) BS03 J40 ? GO:0001586 ... P08908
    P0ABE7
    38552625
    793995 8jt6:R (3.0) BS04 EZX ? GO:0001586 ... P08908
    P0ABE7
    38552625
    793996 8jt8:A (2.7) BS01 MG ? GO:0004930 ... P0ABE7
    P28223
    38552625
    793997 8jt8:A (2.7) BS02 EZX ? GO:0004930 ... P0ABE7
    P28223
    38552625
    793998 8jt8:A (2.7) BS03 CLR ? GO:0004930 ... P0ABE7
    P28223
    38552625
    793999 8jt8:A (2.7) BS04 CLR ? GO:0004930 ... P0ABE7
    P28223
    38552625
    794000 8jt9:A (2.97) BS01 UYX ? GO:0016020 ... Q05940 38081299

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218