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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    793001 8jiu:R (2.76) BS02 D6M ? GO:0004888 ... P47871 37549266
    793002 8jiv:CA (2.84) BS01 rna ? GO:0002181 ... W5ECL2 38458197
    793003 8jiv:CB (2.84) BS01 rna ? GO:0003723 ... Q7X744 38458197
    793004 8jiv:CD (2.84) BS01 rna ? GO:0000027 ... A0A3B6DD91 38458197
    793005 8jiv:CD (2.84) BS02 rna ? GO:0000027 ... A0A3B6DD91 38458197
    793006 8jiv:CE (2.84) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38458197
    793007 8jiv:CF (2.84) BS01 rna ? GO:0000463 ... A0A3B6DM38 38458197
    793008 8jiv:CF (2.84) BS02 rna ? GO:0000463 ... A0A3B6DM38 38458197
    793009 8jiv:CG (2.84) BS01 rna ? GO:0000470 ... A0A3B6RED0 38458197
    793010 8jiv:CG (2.84) BS02 rna ? GO:0000470 ... A0A3B6RED0 38458197
    793011 8jiv:CH (2.84) BS01 rna ? GO:0002181 ... A0A077RTE5 38458197
    793012 8jiv:CI (2.84) BS01 rna ? GO:0000027 ... A0A3B6HUM3 38458197
    793013 8jiv:CI (2.84) BS02 rna ? GO:0000027 ... A0A3B6HUM3 38458197
    793014 8jiv:CJ (2.84) BS01 rna ? GO:0003723 ... A0A3B5XX39 38458197
    793015 8jiv:CJ (2.84) BS02 rna ? GO:0003723 ... A0A3B5XX39 38458197
    793016 8jiv:CL (2.84) BS01 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    793017 8jiv:CL (2.84) BS02 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    793018 8jiv:CM (2.84) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38458197
    793019 8jiv:CN (2.84) BS01 rna ? GO:0002181 ... W5FEX7 38458197
    793020 8jiv:CN (2.84) BS02 rna ? GO:0002181 ... W5FEX7 38458197
    793021 8jiv:CO (2.84) BS01 rna ? GO:0003729 ... Q5I7L1 38458197
    793022 8jiv:CP (2.84) BS01 rna ? GO:0002181 ... W5FSM8 38458197
    793023 8jiv:CP (2.84) BS02 rna ? GO:0002181 ... W5FSM8 38458197
    793024 8jiv:CQ (2.84) BS01 rna ? GO:0003723 ... A0A3B5ZQE8 38458197
    793025 8jiv:CR (2.84) BS01 rna ? GO:0003723 ... A0A3B6C2W3 38458197
    793026 8jiv:CS (2.84) BS01 rna ? GO:0003735 ... A0A3B5Z5M6 38458197
    793027 8jiv:CS (2.84) BS02 rna ? GO:0003735 ... A0A3B5Z5M6 38458197
    793028 8jiv:CT (2.84) BS01 rna ? GO:0003735 ... F4YWL9 38458197
    793029 8jiv:CT (2.84) BS02 rna ? GO:0003735 ... F4YWL9 38458197
    793030 8jiv:CU (2.84) BS01 rna ? GO:0002181 ... W5C5N9 38458197
    793031 8jiv:CV (2.84) BS01 rna ? GO:0003735 ... Q5I7K4 38458197
    793032 8jiv:CW (2.84) BS01 rna ? GO:0002181 ... A0A3B6ELC9 38458197
    793033 8jiv:CX (2.84) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    793034 8jiv:CX (2.84) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    793035 8jiv:CY (2.84) BS01 rna ? GO:0003723 ... A0A3B6GQI2 38458197
    793036 8jiv:CY (2.84) BS02 rna ? GO:0003723 ... A0A3B6GQI2 38458197
    793037 8jiv:CZ (2.84) BS01 rna ? GO:0003735 ... A0A341XZK6 38458197
    793038 8jiv:Ca (2.84) BS01 rna ? GO:0003729 ... A0A3B6AUW8 38458197
    793039 8jiv:Cb (2.84) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38458197
    793040 8jiv:Cc (2.84) BS01 rna ? GO:0003723 ... W4ZRU3 38458197
    793041 8jiv:Cd (2.84) BS01 rna ? GO:0002181 ... W5G990 38458197
    793042 8jiv:Ce (2.84) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38458197
    793043 8jiv:Cg (2.84) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38458197
    793044 8jiv:Ch (2.84) BS01 rna ? GO:0000463 ... Q8L805 38458197
    793045 8jiv:Ch (2.84) BS02 rna ? GO:0000463 ... Q8L805 38458197
    793046 8jiv:Ci (2.84) BS01 rna ? GO:0002181 ... A0A1D5S805 38458197
    793047 8jiv:Cj (2.84) BS01 rna ? GO:0003723 ... A0A1D6BC85 38458197
    793048 8jiv:Cj (2.84) BS02 rna ? GO:0003723 ... A0A1D6BC85 38458197
    793049 8jiv:Cj (2.84) BS03 ZN ? GO:0003723 ... A0A1D6BC85 38458197
    793050 8jiv:Ck (2.84) BS01 rna ? GO:0003735 ... A0A1D5W6Q2 38458197
    793051 8jiv:Cl (2.84) BS01 rna ? GO:0003735 ... Q5I7K7 38458197
    793052 8jiv:Cl (2.84) BS02 rna ? GO:0003735 ... Q5I7K7 38458197
    793053 8jiv:Cm (2.84) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38458197
    793054 8jiv:Cm (2.84) BS02 ZN ? GO:0003729 ... A0A1D5XNC2 38458197
    793055 8jiv:Co (2.84) BS01 rna ? GO:0003735 ... W5HX73 38458197
    793056 8jiv:Co (2.84) BS02 ZN ? GO:0003735 ... W5HX73 38458197
    793057 8jiv:Cp (2.84) BS01 rna ? GO:0003735 ... D8L9P6 38458197
    793058 8jiv:Cr (2.84) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38458197
    793059 8jiw:BA (2.88) BS01 rna ? GO:0000028 ... A0A3B6AV88 38458197
    793060 8jiw:BB (2.88) BS01 rna ? GO:0003735 ... A0A3B6IU74 38458197
    793061 8jiw:BC (2.88) BS01 rna ? GO:0003723 ... A0A3B6N0N5 38458197
    793062 8jiw:BD (2.88) BS01 rna ? GO:0003723 ... W5I1R7 38458197
    793063 8jiw:BE (2.88) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38458197
    793064 8jiw:BF (2.88) BS01 rna ? GO:0000028 ... W5D067 38458197
    793065 8jiw:BG (2.88) BS01 rna ? GO:0003735 ... W5C8N6 38458197
    793066 8jiw:BH (2.88) BS01 rna ? GO:0003735 ... Q5I7K2 38458197
    793067 8jiw:BI (2.88) BS01 rna ? GO:0000462 ... A0A3B6C6G0 38458197
    793068 8jiw:BJ (2.88) BS01 rna ? GO:0003723 ... W5FPA7 38458197
    793069 8jiw:BK (2.88) BS01 rna ? GO:0003723 ... W5AUH7 38458197
    793070 8jiw:BL (2.88) BS01 rna ? GO:0003735 ... A0A3B6QHW3 38458197
    793071 8jiw:BN (2.88) BS01 rna ? GO:0003735 ... W5I035 38458197
    793072 8jiw:BO (2.88) BS01 rna ? GO:0000028 ... A0A3B6SS17 38458197
    793073 8jiw:BP (2.88) BS01 rna ? GO:0000028 ... A0A3B6LV48 38458197
    793074 8jiw:BQ (2.88) BS01 rna ? GO:0000462 ... A0A3B6HX49 38458197
    793075 8jiw:BR (2.88) BS01 rna ? GO:0003735 ... A0A3B5XY60 38458197
    793076 8jiw:BS (2.88) BS01 rna ? GO:0003676 ... A0A3B6TWW5 38458197
    793077 8jiw:BS (2.88) BS02 MG ? GO:0003676 ... A0A3B6TWW5 38458197
    793078 8jiw:BS (2.88) BS03 MG ? GO:0003676 ... A0A3B6TWW5 38458197
    793079 8jiw:BT (2.88) BS01 rna ? GO:0003735 ... W5FWF5 38458197
    793080 8jiw:BU (2.88) BS01 rna ? GO:0003735 ... A0A3B6K9W5 38458197
    793081 8jiw:BW (2.88) BS01 rna ? GO:0003735 ... E2F3W4 38458197
    793082 8jiw:BX (2.88) BS01 rna ? GO:0003735 ... W5FV77 38458197
    793083 8jiw:BY (2.88) BS01 rna ? GO:0003735 ... A0A3B6PK86 38458197
    793084 8jiw:BZ (2.88) BS01 rna ? GO:0005840 ... A0A3B6HY18 38458197
    793085 8jiw:Ba (2.88) BS01 rna ? GO:0003729 ... A0A3B6KQB8 38458197
    793086 8jiw:Bb (2.88) BS01 rna ? GO:0000028 ... W5HZ68 38458197
    793087 8jiw:Bc (2.88) BS01 rna ? GO:0000028 ... W5E8X2 38458197
    793088 8jiw:Bd (2.88) BS01 rna ? GO:0002181 ... A0A1D5ZKM9 38458197
    793089 8jiw:Bd (2.88) BS02 ZN ? GO:0002181 ... A0A1D5ZKM9 38458197
    793090 8jiw:Be (2.88) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38458197
    793091 8jiw:Bg (2.88) BS01 rna ? GO:0005080 ... A0A3B5Z4Q0 38458197
    793092 8jj8:F (3.2) BS01 H98 ? GO:0004930 ... P07550
    P0ABE7    		 37580554
    793093 8jj9:A (2.51) BS01 peptide ? N/A Q658Y4 37903274
    793094 8jj9:B (2.51) BS01 peptide ? N/A Q658Y4 37903274
    793095 8jja:A (1.6) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793096 8jja:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793097 8jjb:A (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793098 8jjb:A (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793099 8jjb:B (2.68) BS01 USI ? GO:0000226 ... P02554 38430854
    793100 8jjb:B (2.68) BS02 GDP ? GO:0000226 ... P02554 38430854
    793101 8jjb:C (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793102 8jjb:C (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793103 8jjb:D (2.68) BS01 CA ? GO:0000226 ... P02554 38430854
    793104 8jjb:D (2.68) BS02 GTP ? GO:0000226 ... P02554 38430854
    793105 8jjb:D (2.68) BS03 USI ? GO:0000226 ... P02554 38430854
    793106 8jjb:F (2.68) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38430854
    793107 8jjc:A (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793108 8jjc:A (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793109 8jjc:B (2.76) BS01 UPO ? GO:0000226 ... P02554 38430854
    793110 8jjc:B (2.76) BS02 GDP ? GO:0000226 ... P02554 38430854
    793111 8jjc:C (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793112 8jjc:C (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    793113 8jjc:D (2.76) BS01 GTP ? GO:0000226 ... P02554 38430854
    793114 8jjc:F (2.76) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38430854
    793115 8jje:A (3.4) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37647387
    793116 8jjk:A (1.7) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793117 8jjk:A (1.7) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793118 8jjk:A (1.7) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793119 8jjk:A (1.7) BS04 MG 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793120 8jjl:A (3.2) BS01 DZQ ? GO:0004930 ... P07550
    P0ABE7    		 37580554
    793121 8jjm:A (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    793122 8jjm:A (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    793123 8jjm:A (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    793124 8jjm:B (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    793125 8jjm:B (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    793126 8jjm:B (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    793127 8jjo:F (3.4) BS01 JTZ ? GO:0004930 ... P07550
    P0ABE7    		 37580554
    793128 8jjs:A (1.534) BS01 peptide 3.6.5.2 GO:0000139 ... P01116 37463267
    793129 8jjs:A (1.534) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37463267
    793130 8jk3:B (1.5) BS01 MG 3.5.2.6 GO:0008800 ... Q3SAW3 N/A
    793131 8jk3:B (1.5) BS02 MG 3.5.2.6 GO:0008800 ... Q3SAW3 N/A
    793132 8jk5:A (1.7) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793133 8jk5:A (1.7) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793134 8jk8:A (1.95) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793135 8jk8:A (1.95) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793136 8jk8:A (1.95) BS03 UDP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793137 8jk9:A (1.6) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793138 8jk9:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793139 8jk9:A (1.6) BS03 GDP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793140 8jk9:A (1.6) BS04 MG 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793141 8jk9:A (1.6) BS05 MG 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793142 8jka:A (2.25) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793143 8jka:A (2.25) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793144 8jka:A (2.25) BS03 AMP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793145 8jke:C (3.67) BS01 dna 2.7.7.6 GO:0000428 ... Q9L0L0 38427710
    793146 8jke:C (3.67) BS02 dna 2.7.7.6 GO:0000428 ... Q9L0L0 38427710
    793147 8jke:D (3.67) BS01 dna 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    793148 8jke:D (3.67) BS02 dna 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    793149 8jke:D (3.67) BS03 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    793150 8jke:D (3.67) BS04 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    793151 8jke:F (3.67) BS01 dna ? GO:0001108 ... P18183 38427710
    793152 8jke:F (3.67) BS02 dna ? GO:0001108 ... P18183 38427710
    793153 8jke:H (3.67) BS01 dna ? GO:0009303 ... Q9L0Q9 38427710
    793154 8jke:H (3.67) BS02 dna ? GO:0009303 ... Q9L0Q9 38427710
    793155 8jke:I (3.67) BS01 dna ? GO:0000160 ... P25941 38427710
    793156 8jke:I (3.67) BS02 dna ? GO:0000160 ... P25941 38427710
    793157 8jke:J (3.67) BS01 dna ? GO:0000160 ... P25941 38427710
    793158 8jke:J (3.67) BS02 dna ? GO:0000160 ... P25941 38427710
    793159 8jkk:A (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    793160 8jkk:A (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    793161 8jkk:A (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    793162 8jkk:D (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    793163 8jkk:D (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    793164 8jkk:D (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    793165 8jkk:G (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    793166 8jkk:G (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    793167 8jkk:G (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    793168 8jkk:J (2.3) BS01 dna ? GO:0046872 ... A8P1J0 38324471
    793169 8jkk:J (2.3) BS02 dna ? GO:0046872 ... A8P1J0 38324471
    793170 8jkk:J (2.3) BS03 MN ? GO:0046872 ... A8P1J0 38324471
    793171 8jkl:C (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793172 8jkl:C (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793173 8jkl:D (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793174 8jkl:D (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793175 8jkl:G (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793176 8jkl:G (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793177 8jkl:H (2.94) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793178 8jkl:H (2.94) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793179 8jkn:C (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793180 8jkn:C (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793181 8jkn:D (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793182 8jkn:D (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793183 8jkn:G (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793184 8jkn:G (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793185 8jkn:H (2.92) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793186 8jkn:H (2.92) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793187 8jko:C (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793188 8jko:C (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793189 8jko:D (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793190 8jko:D (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793191 8jko:G (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793192 8jko:G (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793193 8jko:H (2.95) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793194 8jko:H (2.95) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793195 8jkp:A (2.1) BS01 TMP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793196 8jkp:A (2.1) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793197 8jkp:A (2.1) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    793198 8jkq:D (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    793199 8jkq:D (3.09) BS02 dna ? GO:0000976 ... F2Z3D5 37683642
    793200 8jkq:F (3.09) BS01 dna ? GO:0000976 ... F2Z3D5 37683642
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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