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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    792801 8jh3:e (3.7) BS01 dna ? GO:0000775 ... P84243 37981206
    792802 8jh3:g (3.7) BS01 dna ? GO:0000786 ... P04908 37981206
    792803 8jh3:h (3.7) BS01 dna ? GO:0000786 ... P06899 37981206
    792804 8jh4:A (3.2) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    792805 8jh4:A (3.2) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    792806 8jh4:A (3.2) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    792807 8jh4:A (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    792808 8jh4:A (3.2) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    792809 8jh4:A (3.2) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    792810 8jh4:B (3.2) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    792811 8jh4:B (3.2) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    792812 8jh4:B (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    792813 8jh4:C (3.2) BS01 ZN ? GO:0000428 ... C4R7L2 37981206
    792814 8jh4:E (3.2) BS01 dna ? GO:0001054 ... C4R3P8 37981206
    792815 8jh4:I (3.2) BS01 ZN ? GO:0000428 ... F2QPE6 37981206
    792816 8jh4:J (3.2) BS01 ZN ? GO:0000428 ... C4R009 37981206
    792817 8jh4:L (3.2) BS01 ZN ? GO:0001054 ... F2QMI1 37981206
    792818 8jh4:a (3.2) BS01 dna ? GO:0000775 ... P84243 37981206
    792819 8jh4:a (3.2) BS02 dna ? GO:0000775 ... P84243 37981206
    792820 8jh4:b (3.2) BS01 dna ? GO:0000781 ... P62805 37981206
    792821 8jh4:b (3.2) BS02 dna ? GO:0000781 ... P62805 37981206
    792822 8jh4:c (3.2) BS01 dna ? GO:0000786 ... P04908 37981206
    792823 8jh4:c (3.2) BS02 dna ? GO:0000786 ... P04908 37981206
    792824 8jh4:d (3.2) BS01 dna ? GO:0000786 ... P06899 37981206
    792825 8jh4:d (3.2) BS02 dna ? GO:0000786 ... P06899 37981206
    792826 8jh4:e (3.2) BS01 dna ? GO:0000775 ... P84243 37981206
    792827 8jh4:e (3.2) BS02 dna ? GO:0000775 ... P84243 37981206
    792828 8jh4:f (3.2) BS01 dna ? GO:0000781 ... P62805 37981206
    792829 8jh4:g (3.2) BS01 dna ? GO:0000786 ... P04908 37981206
    792830 8jh4:g (3.2) BS02 dna ? GO:0000786 ... P04908 37981206
    792831 8jh5:A (3.7) BS01 NPS ? GO:0005515 ... Q9C6B8 N/A
    792832 8jh5:B (3.7) BS01 NPS ? GO:0005515 ... Q9C6B8 N/A
    792833 8jhf:A (3.68) BS01 dna ? GO:0000786 ... P68431 38052811
    792834 8jhf:A (3.68) BS02 dna ? GO:0000786 ... P68431 38052811
    792835 8jhf:B (3.68) BS01 dna ? GO:0003677 ... P62805 38052811
    792836 8jhf:B (3.68) BS02 dna ? GO:0003677 ... P62805 38052811
    792837 8jhf:C (3.68) BS01 dna ? GO:0000786 ... P0C0S5 38052811
    792838 8jhf:C (3.68) BS02 dna ? GO:0000786 ... P0C0S5 38052811
    792839 8jhf:D (3.68) BS01 dna ? GO:0000786 ... O60814 38052811
    792840 8jhf:E (3.68) BS01 dna ? GO:0000786 ... P68431 38052811
    792841 8jhf:E (3.68) BS02 dna ? GO:0000786 ... P68431 38052811
    792842 8jhf:F (3.68) BS01 dna ? GO:0003677 ... P62805 38052811
    792843 8jhf:F (3.68) BS02 dna ? GO:0003677 ... P62805 38052811
    792844 8jhf:F (3.68) BS03 SAM ? GO:0003677 ... P62805 38052811
    792845 8jhf:G (3.68) BS01 dna ? GO:0000786 ... P0C0S5 38052811
    792846 8jhf:G (3.68) BS02 dna ? GO:0000786 ... P0C0S5 38052811
    792847 8jhf:H (3.68) BS01 dna ? GO:0000786 ... O60814 38052811
    792848 8jhf:K (3.68) BS01 ZN 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    792849 8jhf:K (3.68) BS02 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    792850 8jhg:A (3.58) BS01 dna ? GO:0000786 ... P68431 38052811
    792851 8jhg:A (3.58) BS02 dna ? GO:0000786 ... P68431 38052811
    792852 8jhg:B (3.58) BS01 dna ? GO:0003677 ... P62805 38052811
    792853 8jhg:B (3.58) BS02 dna ? GO:0003677 ... P62805 38052811
    792854 8jhg:C (3.58) BS01 dna ? GO:0000786 ... P04908 38052811
    792855 8jhg:C (3.58) BS02 dna ? GO:0000786 ... P04908 38052811
    792856 8jhg:D (3.58) BS01 dna ? GO:0000786 ... O60814 38052811
    792857 8jhg:E (3.58) BS01 dna ? GO:0000786 ... P68431 38052811
    792858 8jhg:E (3.58) BS02 dna ? GO:0000786 ... P68431 38052811
    792859 8jhg:F (3.58) BS01 dna ? GO:0003677 ... P62805 38052811
    792860 8jhg:G (3.58) BS01 dna ? GO:0000786 ... P04908 38052811
    792861 8jhg:H (3.58) BS01 dna ? GO:0000786 ... O60814 38052811
    792862 8jhg:K (3.58) BS01 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    792863 8jhl:A (2.10004) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    792864 8jhl:A (2.10004) BS02 DNU 3.6.5.2 GO:0003924 ... P01116 37534597
    792865 8jhn:D (3.75) BS01 UR9 ? GO:0001781 ... P08173
    Q8TDS4    		 38431681
    792866 8jho:A (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    792867 8jho:A (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    792868 8jho:B (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    792869 8jho:B (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    792870 8jho:C (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    792871 8jho:C (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    792872 8jho:D (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    792873 8jho:D (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    792874 8jho:E (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    792875 8jho:E (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    792876 8jho:F (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    792877 8jho:G (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    792878 8jho:G (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    792879 8jho:H (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    792880 8jho:H (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    792881 8jho:K (7.6) BS01 dna ? GO:0000086 ... P22579 37798513
    792882 8jho:L (7.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37798513
    792883 8jho:M (7.6) BS01 dna ? GO:0000122 ... Q12432 37798513
    792884 8jho:N (7.6) BS01 ZN ? GO:0000118 ... Q04779 37798513
    792885 8jho:N (7.6) BS02 ZN ? GO:0000118 ... Q04779 37798513
    792886 8jho:N (7.6) BS03 ZN ? GO:0000118 ... Q04779 37798513
    792887 8jho:N (7.6) BS04 ZN ? GO:0000118 ... Q04779 37798513
    792888 8jho:O (7.6) BS01 dna ? GO:0000122 ... Q12432 37798513
    792889 8jho:P (7.6) BS01 ZN ? GO:0000118 ... Q04779 37798513
    792890 8jho:P (7.6) BS02 ZN ? GO:0000118 ... Q04779 37798513
    792891 8jho:a (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    792892 8jho:a (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    792893 8jho:b (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    792894 8jho:b (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    792895 8jho:c (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    792896 8jho:c (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    792897 8jho:d (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    792898 8jho:d (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    792899 8jho:e (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    792900 8jho:e (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    792901 8jho:f (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    792902 8jho:f (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    792903 8jho:g (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    792904 8jho:g (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    792905 8jho:h (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    792906 8jho:h (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    792907 8jhq:A (3.6) BS01 S1P ? GO:0022857 ... Q8IVW8
    Q9V2J8    		 38123824
    792908 8jhv:A (3.47) BS01 peptide ? N/A P01901 N/A
    792909 8jhv:D (3.47) BS01 peptide ? N/A P01901 N/A
    792910 8jhw:A (3.12) BS01 peptide ? N/A P01901 N/A
    792911 8jhy:A (2.87) BS01 IX8 ? GO:0001781 ... Q8TDS4 37597514
    792912 8jhy:A (2.87) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    792913 8jhz:A (3.2) BS01 ZN ? GO:0005576 ... M9ZTT7 38438396
    792914 8ji2:A (1.75) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792915 8ji2:A (1.75) BS02 67I ? GO:0046872 ... A0A861B387 37973794
    792916 8ji2:B (1.75) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792917 8ji2:B (1.75) BS02 67I ? GO:0046872 ... A0A861B387 37973794
    792918 8ji3:A (1.78) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792919 8ji3:A (1.78) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    792920 8ji3:A (1.78) BS03 67I ? GO:0046872 ... A0A861B387 37973794
    792921 8ji3:B (1.78) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792922 8ji3:B (1.78) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    792923 8ji3:B (1.78) BS03 67I ? GO:0046872 ... A0A861B387 37973794
    792924 8ji4:A (1.67) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792925 8ji4:A (1.67) BS02 64X ? GO:0046872 ... A0A861B387 37973794
    792926 8ji4:B (1.67) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792927 8ji4:B (1.67) BS02 64X ? GO:0046872 ... A0A861B387 37973794
    792928 8ji5:A (2.01) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792929 8ji5:A (2.01) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    792930 8ji5:A (2.01) BS03 64X ? GO:0046872 ... A0A861B387 37973794
    792931 8ji5:B (2.01) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792932 8ji5:B (2.01) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    792933 8ji5:B (2.01) BS03 64X ? GO:0046872 ... A0A861B387 37973794
    792934 8ji6:A (1.9) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792935 8ji6:A (1.9) BS02 TRP ? GO:0046872 ... A0A861B387 37973794
    792936 8ji6:B (1.9) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792937 8ji6:B (1.9) BS02 TRP ? GO:0046872 ... A0A861B387 37973794
    792938 8ji7:A (1.61) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792939 8ji7:A (1.61) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    792940 8ji7:A (1.61) BS03 TRP ? GO:0046872 ... A0A861B387 37973794
    792941 8ji7:B (1.61) BS01 FE2 ? GO:0046872 ... A0A861B387 37973794
    792942 8ji7:B (1.61) BS02 FE2 ? GO:0046872 ... A0A861B387 37973794
    792943 8ji7:B (1.61) BS03 TRP ? GO:0046872 ... A0A861B387 37973794
    792944 8ji8:A (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792945 8ji8:A (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792946 8ji8:B (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792947 8ji8:B (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792948 8ji8:C (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792949 8ji8:C (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792950 8ji8:D (2.65) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792951 8ji8:D (2.65) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792952 8jia:A (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    792953 8jia:B (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    792954 8jib:A (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792955 8jib:A (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792956 8jib:B (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792957 8jib:B (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792958 8jib:C (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792959 8jib:C (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792960 8jib:D (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792961 8jib:D (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792962 8jib:E (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792963 8jib:E (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792964 8jib:F (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792965 8jib:F (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792966 8jib:G (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792967 8jib:G (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792968 8jib:H (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792969 8jib:H (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792970 8jib:I (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792971 8jib:I (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792972 8jib:J (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792973 8jib:J (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792974 8jib:K (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792975 8jib:K (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792976 8jib:L (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    792977 8jib:L (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    792978 8jif:R (2.28) BS01 ZN 4.2.1.1 GO:0004089 ... Q64444 38315719
    792979 8jig:A (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 N/A
    792980 8jig:B (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 N/A
    792981 8jii:A (3.17) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    792982 8jii:A (3.17) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    792983 8jii:A (3.17) BS03 IX8 ? GO:0001781 ... Q8TDS4 37597514
    792984 8jij:A (2.5) BS01 PLP ? N/A A0A4S4ESS1 N/A
    792985 8jij:A (2.5) BS02 ZN ? N/A A0A4S4ESS1 N/A
    792986 8jij:A (2.5) BS03 ZN ? N/A A0A4S4ESS1 N/A
    792987 8jik:A (2.6) BS01 PLP ? N/A A0A4S4ESS1 N/A
    792988 8jik:A (2.6) BS02 ZN ? N/A A0A4S4ESS1 N/A
    792989 8jil:A (3.5) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    792990 8jil:A (3.5) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    792991 8jim:E (2.98) BS01 AW9 ? GO:0001781 ... Q8TDS4 37597514
    792992 8jip:R (2.85) BS01 peptide ? GO:0004888 ... P43220 37549266
    792993 8jip:R (2.85) BS02 D6M ? GO:0004888 ... P43220 37549266
    792994 8jiq:R (3.4) BS01 peptide ? GO:0004888 ... P47871 37549266
    792995 8jir:R (2.57) BS01 peptide ? GO:0004888 ... P43220 37549266
    792996 8jir:R (2.57) BS02 D6M ? GO:0004888 ... P43220 37549266
    792997 8jis:R (2.46) BS01 peptide ? GO:0004888 ... P43220 37549266
    792998 8jit:R (2.91) BS01 peptide ? GO:0004888 ... P47871 37549266
    792999 8jit:R (2.91) BS02 D6M ? GO:0004888 ... P47871 37549266
    793000 8jiu:R (2.76) BS01 peptide ? GO:0004888 ... P47871 37549266
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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