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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    792201 8jdj:t (2.5) BS02 ZN ? GO:0002181 ... P83881 37992713
    792202 8jdj:u (2.5) BS01 rna ? GO:0002181 ... P61513 37992713
    792203 8jdj:u (2.5) BS02 MG ? GO:0002181 ... P61513 37992713
    792204 8jdj:u (2.5) BS03 ZN ? GO:0002181 ... P61513 37992713
    792205 8jdj:v (2.5) BS01 rna ? GO:0002181 ... P46779 37992713
    792206 8jdj:x (2.5) BS01 rna ? GO:0000028 ... P08865 37992713
    792207 8jdj:y (2.5) BS01 rna ? GO:0002181 ... P61247 37992713
    792208 8jdj:z (2.5) BS01 rna ? GO:0002181 ... P15880 37992713
    792209 8jdk:0 (2.26) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    792210 8jdk:1 (2.26) BS01 rna ? GO:0002181 ... P62701 37992713
    792211 8jdk:2 (2.26) BS01 rna ? GO:0000028 ... P46782 37992713
    792212 8jdk:2 (2.26) BS02 MG ? GO:0000028 ... P46782 37992713
    792213 8jdk:3 (2.26) BS01 rna ? GO:0000082 ... P62753 37992713
    792214 8jdk:4 (2.26) BS01 rna ? GO:0001843 ... P62081 37992713
    792215 8jdk:5 (2.26) BS01 rna ? GO:0000462 ... P62241 37992713
    792216 8jdk:5 (2.26) BS02 rna ? GO:0000462 ... P62241 37992713
    792217 8jdk:6 (2.26) BS01 rna ? GO:0002181 ... P46781 37992713
    792218 8jdk:7 (2.26) BS01 rna ? GO:0002181 ... P46783 37992713
    792219 8jdk:8 (2.26) BS01 rna ? GO:0002181 ... P62280 37992713
    792220 8jdk:9 (2.26) BS01 rna ? GO:0002181 ... P62277 37992713
    792221 8jdk:AA (2.26) BS01 rna ? GO:0000028 ... P62263 37992713
    792222 8jdk:AB (2.26) BS01 rna ? GO:0000028 ... P62841 37992713
    792223 8jdk:AB (2.26) BS02 rna ? GO:0000028 ... P62841 37992713
    792224 8jdk:AC (2.26) BS01 rna ? GO:0000462 ... P62249 37992713
    792225 8jdk:AD (2.26) BS01 rna ? GO:0002181 ... P08708 37992713
    792226 8jdk:AE (2.26) BS01 rna ? GO:0002181 ... P62269 37992713
    792227 8jdk:AF (2.26) BS01 rna ? GO:0000028 ... P39019 37992713
    792228 8jdk:AG (2.26) BS01 rna ? GO:0002181 ... P60866 37992713
    792229 8jdk:AI (2.26) BS01 rna ? GO:0002181 ... P62244 37992713
    792230 8jdk:AJ (2.26) BS01 rna ? GO:0002181 ... P62266 37992713
    792231 8jdk:AK (2.26) BS01 rna ? GO:0002181 ... P62847 37992713
    792232 8jdk:AL (2.26) BS01 rna ? GO:0002181 ... P62851 37992713
    792233 8jdk:AM (2.26) BS01 rna ? GO:0002181 ... P62854 37992713
    792234 8jdk:AM (2.26) BS02 ZN ? GO:0002181 ... P62854 37992713
    792235 8jdk:AN (2.26) BS01 rna ? GO:0000028 ... P42677 37992713
    792236 8jdk:AO (2.26) BS01 rna ? GO:0000028 ... P62857 37992713
    792237 8jdk:AP (2.26) BS01 rna ? GO:0002181 ... P62273 37992713
    792238 8jdk:AP (2.26) BS02 ZN ? GO:0002181 ... P62273 37992713
    792239 8jdk:AQ (2.26) BS01 rna ? GO:0003735 ... P62861 37992713
    792240 8jdk:AR (2.26) BS01 rna ? GO:0001891 ... P63244 37992713
    792241 8jdk:G (2.26) BS01 rna ? GO:0002181 ... P62917 37992713
    792242 8jdk:G (2.26) BS02 MG ? GO:0002181 ... P62917 37992713
    792243 8jdk:H (2.26) BS01 rna ? GO:0002181 ... P39023 37992713
    792244 8jdk:H (2.26) BS02 MG ? GO:0002181 ... P39023 37992713
    792245 8jdk:I (2.26) BS01 rna ? GO:0002181 ... P36578 37992713
    792246 8jdk:I (2.26) BS02 rna ? GO:0002181 ... P36578 37992713
    792247 8jdk:J (2.26) BS01 rna ? GO:0000027 ... P46777 37992713
    792248 8jdk:J (2.26) BS02 rna ? GO:0000027 ... P46777 37992713
    792249 8jdk:K (2.26) BS01 rna ? GO:0000027 ... Q02878 37992713
    792250 8jdk:L (2.26) BS01 rna ? GO:0000463 ... P18124 37992713
    792251 8jdk:L (2.26) BS02 rna ? GO:0000463 ... P18124 37992713
    792252 8jdk:M (2.26) BS01 rna ? GO:0000470 ... P62424 37992713
    792253 8jdk:M (2.26) BS02 rna ? GO:0000470 ... P62424 37992713
    792254 8jdk:N (2.26) BS01 rna ? GO:0002181 ... P32969 37992713
    792255 8jdk:N (2.26) BS02 MG ? GO:0002181 ... P32969 37992713
    792256 8jdk:O (2.26) BS01 rna ? GO:0000027 ... Q96L21 37992713
    792257 8jdk:O (2.26) BS02 rna ? GO:0000027 ... Q96L21 37992713
    792258 8jdk:P (2.26) BS01 rna ? GO:0000027 ... P62913 37992713
    792259 8jdk:P (2.26) BS02 rna ? GO:0000027 ... P62913 37992713
    792260 8jdk:P (2.26) BS03 rna ? GO:0000027 ... P62913 37992713
    792261 8jdk:Q (2.26) BS01 rna ? GO:0001824 ... P26373 37992713
    792262 8jdk:Q (2.26) BS02 rna ? GO:0001824 ... P26373 37992713
    792263 8jdk:R (2.26) BS01 rna ? GO:0002181 ... P50914 37992713
    792264 8jdk:S (2.26) BS01 rna ? GO:0002181 ... P61313 37992713
    792265 8jdk:S (2.26) BS02 rna ? GO:0002181 ... P61313 37992713
    792266 8jdk:T (2.26) BS01 rna ? GO:0002181 ... P40429 37992713
    792267 8jdk:U (2.26) BS01 rna ? GO:0002181 ... P18621 37992713
    792268 8jdk:U (2.26) BS02 rna ? GO:0002181 ... P18621 37992713
    792269 8jdk:V (2.26) BS01 rna ? GO:0002181 ... Q07020 37992713
    792270 8jdk:V (2.26) BS02 MG ? GO:0002181 ... Q07020 37992713
    792271 8jdk:V (2.26) BS03 MG ? GO:0002181 ... Q07020 37992713
    792272 8jdk:W (2.26) BS01 rna ? GO:0002181 ... P84098 37992713
    792273 8jdk:W (2.26) BS02 rna ? GO:0002181 ... P84098 37992713
    792274 8jdk:X (2.26) BS01 rna ? GO:0002181 ... Q02543 37992713
    792275 8jdk:X (2.26) BS02 rna ? GO:0002181 ... Q02543 37992713
    792276 8jdk:Y (2.26) BS01 rna ? GO:0002181 ... P46778 37992713
    792277 8jdk:Y (2.26) BS02 rna ? GO:0002181 ... P46778 37992713
    792278 8jdk:Z (2.26) BS01 rna ? GO:0002181 ... P35268 37992713
    792279 8jdk:a (2.26) BS01 rna ? GO:0000122 ... P62829 37992713
    792280 8jdk:b (2.26) BS01 rna ? GO:0000027 ... P83731 37992713
    792281 8jdk:c (2.26) BS01 rna ? GO:0000027 ... P62750 37992713
    792282 8jdk:c (2.26) BS02 rna ? GO:0000027 ... P62750 37992713
    792283 8jdk:d (2.26) BS01 rna ? GO:0002181 ... P61254 37992713
    792284 8jdk:d (2.26) BS02 rna ? GO:0002181 ... P61254 37992713
    792285 8jdk:e (2.26) BS01 rna ? GO:0002181 ... P61353 37992713
    792286 8jdk:f (2.26) BS01 rna ? GO:0002181 ... P46776 37992713
    792287 8jdk:g (2.26) BS01 rna ? GO:0002181 ... P47914 37992713
    792288 8jdk:g (2.26) BS02 MG ? GO:0002181 ... P47914 37992713
    792289 8jdk:h (2.26) BS01 rna ? GO:0002181 ... P62888 37992713
    792290 8jdk:i (2.26) BS01 rna ? GO:0002181 ... P62899 37992713
    792291 8jdk:j (2.26) BS01 rna ? GO:0002181 ... P62910 37992713
    792292 8jdk:j (2.26) BS02 MG ? GO:0002181 ... P62910 37992713
    792293 8jdk:k (2.26) BS01 rna ? GO:0000049 ... P18077 37992713
    792294 8jdk:k (2.26) BS02 MG ? GO:0000049 ... P18077 37992713
    792295 8jdk:l (2.26) BS01 rna ? GO:0002181 ... P49207 37992713
    792296 8jdk:l (2.26) BS02 MG ? GO:0002181 ... P49207 37992713
    792297 8jdk:m (2.26) BS01 rna ? GO:0000463 ... P42766 37992713
    792298 8jdk:m (2.26) BS02 rna ? GO:0000463 ... P42766 37992713
    792299 8jdk:n (2.26) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    792300 8jdk:o (2.26) BS01 rna ? GO:0002181 ... P61927 37992713
    792301 8jdk:o (2.26) BS02 rna ? GO:0002181 ... P61927 37992713
    792302 8jdk:o (2.26) BS03 ZN ? GO:0002181 ... P61927 37992713
    792303 8jdk:p (2.26) BS01 rna ? GO:0001501 ... P63173 37992713
    792304 8jdk:q (2.26) BS01 rna ? GO:0002181 ... P62891 37992713
    792305 8jdk:q (2.26) BS02 rna ? GO:0002181 ... P62891 37992713
    792306 8jdk:r (2.26) BS01 rna ? GO:0002181 ... P62987 37992713
    792307 8jdk:r (2.26) BS02 ZN ? GO:0002181 ... P62987 37992713
    792308 8jdk:t (2.26) BS01 rna ? GO:0002181 ... P83881 37992713
    792309 8jdk:t (2.26) BS02 ZN ? GO:0002181 ... P83881 37992713
    792310 8jdk:u (2.26) BS01 rna ? GO:0002181 ... P61513 37992713
    792311 8jdk:u (2.26) BS02 MG ? GO:0002181 ... P61513 37992713
    792312 8jdk:u (2.26) BS03 ZN ? GO:0002181 ... P61513 37992713
    792313 8jdk:v (2.26) BS01 rna ? GO:0002181 ... P46779 37992713
    792314 8jdk:x (2.26) BS01 rna ? GO:0000028 ... P08865 37992713
    792315 8jdk:y (2.26) BS01 rna ? GO:0002181 ... P61247 37992713
    792316 8jdk:z (2.26) BS01 rna ? GO:0002181 ... P15880 37992713
    792317 8jdl:0 (2.42) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    792318 8jdl:1 (2.42) BS01 rna ? GO:0002181 ... P62701 37992713
    792319 8jdl:2 (2.42) BS01 rna ? GO:0000028 ... P46782 37992713
    792320 8jdl:2 (2.42) BS02 MG ? GO:0000028 ... P46782 37992713
    792321 8jdl:3 (2.42) BS01 rna ? GO:0000082 ... P62753 37992713
    792322 8jdl:4 (2.42) BS01 rna ? GO:0001843 ... P62081 37992713
    792323 8jdl:5 (2.42) BS01 rna ? GO:0000462 ... P62241 37992713
    792324 8jdl:5 (2.42) BS02 rna ? GO:0000462 ... P62241 37992713
    792325 8jdl:6 (2.42) BS01 rna ? GO:0002181 ... P46781 37992713
    792326 8jdl:7 (2.42) BS01 rna ? GO:0002181 ... P46783 37992713
    792327 8jdl:8 (2.42) BS01 rna ? GO:0002181 ... P62280 37992713
    792328 8jdl:9 (2.42) BS01 rna ? GO:0002181 ... P62277 37992713
    792329 8jdl:AA (2.42) BS01 rna ? GO:0000028 ... P62263 37992713
    792330 8jdl:AA (2.42) BS02 MG ? GO:0000028 ... P62263 37992713
    792331 8jdl:AB (2.42) BS01 rna ? GO:0000028 ... P62841 37992713
    792332 8jdl:AB (2.42) BS02 rna ? GO:0000028 ... P62841 37992713
    792333 8jdl:AB (2.42) BS03 rna ? GO:0000028 ... P62841 37992713
    792334 8jdl:AC (2.42) BS01 rna ? GO:0000462 ... P62249 37992713
    792335 8jdl:AD (2.42) BS01 rna ? GO:0002181 ... P08708 37992713
    792336 8jdl:AE (2.42) BS01 rna ? GO:0002181 ... P62269 37992713
    792337 8jdl:AF (2.42) BS01 rna ? GO:0000028 ... P39019 37992713
    792338 8jdl:AG (2.42) BS01 rna ? GO:0002181 ... P60866 37992713
    792339 8jdl:AI (2.42) BS01 rna ? GO:0002181 ... P62244 37992713
    792340 8jdl:AJ (2.42) BS01 rna ? GO:0002181 ... P62266 37992713
    792341 8jdl:AK (2.42) BS01 rna ? GO:0002181 ... P62847 37992713
    792342 8jdl:AL (2.42) BS01 rna ? GO:0002181 ... P62851 37992713
    792343 8jdl:AM (2.42) BS01 rna ? GO:0002181 ... P62854 37992713
    792344 8jdl:AM (2.42) BS02 ZN ? GO:0002181 ... P62854 37992713
    792345 8jdl:AN (2.42) BS01 rna ? GO:0000028 ... P42677 37992713
    792346 8jdl:AO (2.42) BS01 rna ? GO:0000028 ... P62857 37992713
    792347 8jdl:AP (2.42) BS01 rna ? GO:0002181 ... P62273 37992713
    792348 8jdl:AP (2.42) BS02 ZN ? GO:0002181 ... P62273 37992713
    792349 8jdl:AQ (2.42) BS01 rna ? GO:0003735 ... P62861 37992713
    792350 8jdl:AR (2.42) BS01 rna ? GO:0001891 ... P63244 37992713
    792351 8jdl:G (2.42) BS01 rna ? GO:0002181 ... P62917 37992713
    792352 8jdl:G (2.42) BS02 MG ? GO:0002181 ... P62917 37992713
    792353 8jdl:G (2.42) BS03 MG ? GO:0002181 ... P62917 37992713
    792354 8jdl:H (2.42) BS01 rna ? GO:0002181 ... P39023 37992713
    792355 8jdl:H (2.42) BS02 MG ? GO:0002181 ... P39023 37992713
    792356 8jdl:I (2.42) BS01 rna ? GO:0002181 ... P36578 37992713
    792357 8jdl:I (2.42) BS02 rna ? GO:0002181 ... P36578 37992713
    792358 8jdl:J (2.42) BS01 rna ? GO:0000027 ... P46777 37992713
    792359 8jdl:J (2.42) BS02 rna ? GO:0000027 ... P46777 37992713
    792360 8jdl:K (2.42) BS01 rna ? GO:0000027 ... Q02878 37992713
    792361 8jdl:L (2.42) BS01 rna ? GO:0000463 ... P18124 37992713
    792362 8jdl:L (2.42) BS02 rna ? GO:0000463 ... P18124 37992713
    792363 8jdl:M (2.42) BS01 rna ? GO:0000470 ... P62424 37992713
    792364 8jdl:M (2.42) BS02 rna ? GO:0000470 ... P62424 37992713
    792365 8jdl:N (2.42) BS01 rna ? GO:0002181 ... P32969 37992713
    792366 8jdl:N (2.42) BS02 MG ? GO:0002181 ... P32969 37992713
    792367 8jdl:O (2.42) BS01 rna ? GO:0000027 ... Q96L21 37992713
    792368 8jdl:O (2.42) BS02 rna ? GO:0000027 ... Q96L21 37992713
    792369 8jdl:P (2.42) BS01 rna ? GO:0000027 ... P62913 37992713
    792370 8jdl:P (2.42) BS02 rna ? GO:0000027 ... P62913 37992713
    792371 8jdl:P (2.42) BS03 rna ? GO:0000027 ... P62913 37992713
    792372 8jdl:Q (2.42) BS01 rna ? GO:0001824 ... P26373 37992713
    792373 8jdl:Q (2.42) BS02 rna ? GO:0001824 ... P26373 37992713
    792374 8jdl:R (2.42) BS01 rna ? GO:0002181 ... P50914 37992713
    792375 8jdl:S (2.42) BS01 rna ? GO:0002181 ... P61313 37992713
    792376 8jdl:S (2.42) BS02 rna ? GO:0002181 ... P61313 37992713
    792377 8jdl:T (2.42) BS01 rna ? GO:0002181 ... P40429 37992713
    792378 8jdl:U (2.42) BS01 rna ? GO:0002181 ... P18621 37992713
    792379 8jdl:U (2.42) BS02 rna ? GO:0002181 ... P18621 37992713
    792380 8jdl:V (2.42) BS01 rna ? GO:0002181 ... Q07020 37992713
    792381 8jdl:V (2.42) BS02 MG ? GO:0002181 ... Q07020 37992713
    792382 8jdl:V (2.42) BS03 MG ? GO:0002181 ... Q07020 37992713
    792383 8jdl:W (2.42) BS01 rna ? GO:0002181 ... P84098 37992713
    792384 8jdl:W (2.42) BS02 rna ? GO:0002181 ... P84098 37992713
    792385 8jdl:X (2.42) BS01 rna ? GO:0002181 ... Q02543 37992713
    792386 8jdl:X (2.42) BS02 rna ? GO:0002181 ... Q02543 37992713
    792387 8jdl:Y (2.42) BS01 rna ? GO:0002181 ... P46778 37992713
    792388 8jdl:Y (2.42) BS02 rna ? GO:0002181 ... P46778 37992713
    792389 8jdl:Z (2.42) BS01 rna ? GO:0002181 ... P35268 37992713
    792390 8jdl:a (2.42) BS01 rna ? GO:0000122 ... P62829 37992713
    792391 8jdl:b (2.42) BS01 rna ? GO:0000027 ... P83731 37992713
    792392 8jdl:c (2.42) BS01 rna ? GO:0000027 ... P62750 37992713
    792393 8jdl:c (2.42) BS02 rna ? GO:0000027 ... P62750 37992713
    792394 8jdl:d (2.42) BS01 rna ? GO:0002181 ... P61254 37992713
    792395 8jdl:d (2.42) BS02 rna ? GO:0002181 ... P61254 37992713
    792396 8jdl:e (2.42) BS01 rna ? GO:0002181 ... P61353 37992713
    792397 8jdl:f (2.42) BS01 rna ? GO:0002181 ... P46776 37992713
    792398 8jdl:g (2.42) BS01 rna ? GO:0002181 ... P47914 37992713
    792399 8jdl:g (2.42) BS02 MG ? GO:0002181 ... P47914 37992713
    792400 8jdl:h (2.42) BS01 rna ? GO:0002181 ... P62888 37992713
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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