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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    791201 8j7b:B (3.22) BS10 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791202 8j7b:B (3.22) BS11 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791203 8j7b:B (3.22) BS12 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791204 8j7b:B (3.22) BS13 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791205 8j7b:B (3.22) BS14 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791206 8j7b:B (3.22) BS15 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791207 8j7b:B (3.22) BS16 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791208 8j7b:B (3.22) BS17 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791209 8j7b:B (3.22) BS18 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791210 8j7b:B (3.22) BS19 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791211 8j7b:B (3.22) BS20 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791212 8j7b:B (3.22) BS21 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791213 8j7b:B (3.22) BS22 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791214 8j7b:B (3.22) BS23 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791215 8j7b:B (3.22) BS24 PQN 1.97.1.12 GO:0000287 ... P56767 37936349
    791216 8j7b:B (3.22) BS25 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791217 8j7b:B (3.22) BS26 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791218 8j7b:B (3.22) BS27 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791219 8j7b:B (3.22) BS28 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791220 8j7b:B (3.22) BS29 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791221 8j7b:B (3.22) BS30 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791222 8j7b:B (3.22) BS31 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791223 8j7b:B (3.22) BS32 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791224 8j7b:B (3.22) BS33 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791225 8j7b:B (3.22) BS34 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791226 8j7b:B (3.22) BS35 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791227 8j7b:B (3.22) BS36 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791228 8j7b:B (3.22) BS37 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791229 8j7b:B (3.22) BS38 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791230 8j7b:B (3.22) BS39 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791231 8j7b:B (3.22) BS40 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791232 8j7b:B (3.22) BS41 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791233 8j7b:B (3.22) BS42 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791234 8j7b:B (3.22) BS43 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791235 8j7b:B (3.22) BS44 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    791236 8j7b:C (3.22) BS01 SF4 1.97.1.12 GO:0003729 ... P62090 37936349
    791237 8j7b:C (3.22) BS02 SF4 1.97.1.12 GO:0003729 ... P62090 37936349
    791238 8j7b:F (3.22) BS01 CLA ? GO:0003729 ... Q9SHE8 37936349
    791239 8j7b:F (3.22) BS02 CLA ? GO:0003729 ... Q9SHE8 37936349
    791240 8j7b:F (3.22) BS03 CLA ? GO:0003729 ... Q9SHE8 37936349
    791241 8j7b:F (3.22) BS04 CLA ? GO:0003729 ... Q9SHE8 37936349
    791242 8j7b:F (3.22) BS05 CLA ? GO:0003729 ... Q9SHE8 37936349
    791243 8j7b:G (3.22) BS01 CLA ? GO:0005515 ... Q9S7N7 37936349
    791244 8j7b:G (3.22) BS02 CLA ? GO:0005515 ... Q9S7N7 37936349
    791245 8j7b:G (3.22) BS03 CLA ? GO:0005515 ... Q9S7N7 37936349
    791246 8j7b:H (3.22) BS01 CLA ? GO:0005634 ... Q9SUI6 37936349
    791247 8j7b:H (3.22) BS02 CLA ? GO:0005634 ... Q9SUI6 37936349
    791248 8j7b:I (3.22) BS01 CLA ? GO:0003674 ... P56768 37936349
    791249 8j7b:I (3.22) BS02 CLA ? GO:0003674 ... P56768 37936349
    791250 8j7b:J (3.22) BS01 CLA ? GO:0003674 ... P56769 37936349
    791251 8j7b:J (3.22) BS02 CLA ? GO:0003674 ... P56769 37936349
    791252 8j7b:J (3.22) BS03 CLA ? GO:0003674 ... P56769 37936349
    791253 8j7b:K (3.22) BS01 CLA ? GO:0005634 ... Q9SUI5 37936349
    791254 8j7b:K (3.22) BS02 CLA ? GO:0005634 ... Q9SUI5 37936349
    791255 8j7b:K (3.22) BS03 CLA ? GO:0005634 ... Q9SUI5 37936349
    791256 8j7b:K (3.22) BS04 CLA ? GO:0005634 ... Q9SUI5 37936349
    791257 8j7b:L (3.22) BS01 CLA ? GO:0003729 ... Q9SUI4 37936349
    791258 8j7b:L (3.22) BS02 CLA ? GO:0003729 ... Q9SUI4 37936349
    791259 8j7b:L (3.22) BS03 CLA ? GO:0003729 ... Q9SUI4 37936349
    791260 8j7b:L (3.22) BS04 CLA ? GO:0003729 ... Q9SUI4 37936349
    791261 8j7b:L (3.22) BS05 CLA ? GO:0003729 ... Q9SUI4 37936349
    791262 8j7b:L (3.22) BS06 CLA ? GO:0003729 ... Q9SUI4 37936349
    791263 8j7d:C (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q9HCC0 N/A
    791264 8j7d:D (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q96RQ3 N/A
    791265 8j7d:E (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q9HCC0 N/A
    791266 8j7d:F (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q96RQ3 N/A
    791267 8j7d:G (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q9HCC0 N/A
    791268 8j7d:I (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q96RQ3 N/A
    791269 8j7d:J (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q9HCC0 N/A
    791270 8j7d:L (2.7) BS01 BTI 6.4.1.4 GO:0002169 ... Q96RQ3 N/A
    791271 8j7f:A (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791272 8j7f:A (2.6) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791273 8j7f:A (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791274 8j7f:A (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791275 8j7f:A (2.6) BS05 CA ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791276 8j7f:B (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791277 8j7f:B (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791278 8j7f:B (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791279 8j7f:B (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791280 8j7f:B (2.6) BS05 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791281 8j7f:C (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791282 8j7f:C (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791283 8j7f:C (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791284 8j7f:C (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791285 8j7f:D (2.6) BS01 peptide ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791286 8j7f:D (2.6) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791287 8j7f:D (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791288 8j7f:D (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791289 8j7g:A (1.63) BS01 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    791290 8j7g:A (1.63) BS02 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    791291 8j7g:B (1.63) BS01 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    791292 8j7g:B (1.63) BS02 60G 3.1.1.- GO:0016787 ... G9I933 37468532
    791293 8j7i:A (1.54) BS01 1SM 3.1.1.- GO:0016787 ... G9I933 N/A
    791294 8j7i:A (1.54) BS02 1SM 3.1.1.- GO:0016787 ... G9I933 N/A
    791295 8j7i:B (1.54) BS01 1SM 3.1.1.- GO:0016787 ... G9I933 N/A
    791296 8j7j:A (1.54) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    791297 8j7j:B (1.54) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    791298 8j7k:A (1.36) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    791299 8j7k:B (1.36) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    791300 8j7k:B (1.36) BS02 R4O 3.1.1.- GO:0016787 ... G9I933 37468532
    791301 8j7l:A (1.59) BS01 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    791302 8j7l:A (1.59) BS02 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    791303 8j7l:B (1.59) BS01 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    791304 8j7l:B (1.59) BS02 RXF 3.1.1.- GO:0016787 ... G9I933 N/A
    791305 8j7m:A (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791306 8j7m:A (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791307 8j7m:B (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791308 8j7m:B (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791309 8j7m:C (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791310 8j7m:C (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791311 8j7m:C (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791312 8j7m:C (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791313 8j7m:D (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791314 8j7m:D (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791315 8j7m:D (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791316 8j7m:D (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    791317 8j7o:A (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 N/A
    791318 8j7o:B (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 N/A
    791319 8j7o:C (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 N/A
    791320 8j7o:E (3.83) BS01 BTI 6.4.1.1 GO:0003824 ... P11498 N/A
    791321 8j7r:B (3.7) BS01 rna ? GO:0003723 ... Q04637 37640715
    791322 8j7s:A (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    791323 8j7s:A (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    791324 8j7s:B (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    791325 8j7s:B (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    791326 8j7s:E (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    791327 8j7s:E (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    791328 8j7s:F (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    791329 8j7s:F (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    791330 8j7s:I (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    791331 8j7s:I (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    791332 8j7s:J (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    791333 8j7s:J (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    791334 8j7s:M (2.84) BS01 rna ? GO:0003676 ... A0A316E3U6 37491603
    791335 8j7s:M (2.84) BS02 dna ? GO:0003676 ... A0A316E3U6 37491603
    791336 8j7s:N (2.84) BS01 rna ? GO:0007165 ... A0A316E683 37491603
    791337 8j7s:N (2.84) BS02 dna ? GO:0007165 ... A0A316E683 37491603
    791338 8j7u:A (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    791339 8j7u:B (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    791340 8j7w:A (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    791341 8j7w:B (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    791342 8j7y:A (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    791343 8j7y:B (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    791344 8j7z:A (2.72) BS01 A86 ? GO:0009416 ... O65890 38071196
    791345 8j7z:A (2.72) BS02 A86 ? GO:0009416 ... O65890 38071196
    791346 8j7z:A (2.72) BS03 A86 ? GO:0009416 ... O65890 38071196
    791347 8j7z:A (2.72) BS04 A86 ? GO:0009416 ... O65890 38071196
    791348 8j7z:A (2.72) BS05 A86 ? GO:0009416 ... O65890 38071196
    791349 8j7z:A (2.72) BS06 A86 ? GO:0009416 ... O65890 38071196
    791350 8j7z:A (2.72) BS07 A86 ? GO:0009416 ... O65890 38071196
    791351 8j7z:A (2.72) BS08 CLA ? GO:0009416 ... O65890 38071196
    791352 8j7z:A (2.72) BS09 CLA ? GO:0009416 ... O65890 38071196
    791353 8j7z:A (2.72) BS10 KC2 ? GO:0009416 ... O65890 38071196
    791354 8j7z:A (2.72) BS11 CLA ? GO:0009416 ... O65890 38071196
    791355 8j7z:A (2.72) BS12 KC2 ? GO:0009416 ... O65890 38071196
    791356 8j7z:A (2.72) BS13 CLA ? GO:0009416 ... O65890 38071196
    791357 8j7z:A (2.72) BS14 CLA ? GO:0009416 ... O65890 38071196
    791358 8j7z:A (2.72) BS15 KC1 ? GO:0009416 ... O65890 38071196
    791359 8j7z:A (2.72) BS16 CLA ? GO:0009416 ... O65890 38071196
    791360 8j7z:A (2.72) BS17 CLA ? GO:0009416 ... O65890 38071196
    791361 8j7z:A (2.72) BS18 CLA ? GO:0009416 ... O65890 38071196
    791362 8j7z:A (2.72) BS19 CLA ? GO:0009416 ... O65890 38071196
    791363 8j7z:B (2.72) BS01 CLA ? GO:0009416 ... O65890 38071196
    791364 8j7z:B (2.72) BS02 A86 ? GO:0009416 ... O65890 38071196
    791365 8j7z:B (2.72) BS03 A86 ? GO:0009416 ... O65890 38071196
    791366 8j7z:B (2.72) BS04 A86 ? GO:0009416 ... O65890 38071196
    791367 8j7z:B (2.72) BS05 A86 ? GO:0009416 ... O65890 38071196
    791368 8j7z:B (2.72) BS06 A86 ? GO:0009416 ... O65890 38071196
    791369 8j7z:B (2.72) BS07 A86 ? GO:0009416 ... O65890 38071196
    791370 8j7z:B (2.72) BS08 A86 ? GO:0009416 ... O65890 38071196
    791371 8j7z:B (2.72) BS09 CLA ? GO:0009416 ... O65890 38071196
    791372 8j7z:B (2.72) BS10 CLA ? GO:0009416 ... O65890 38071196
    791373 8j7z:B (2.72) BS11 KC2 ? GO:0009416 ... O65890 38071196
    791374 8j7z:B (2.72) BS12 CLA ? GO:0009416 ... O65890 38071196
    791375 8j7z:B (2.72) BS13 KC2 ? GO:0009416 ... O65890 38071196
    791376 8j7z:B (2.72) BS14 CLA ? GO:0009416 ... O65890 38071196
    791377 8j7z:B (2.72) BS15 CLA ? GO:0009416 ... O65890 38071196
    791378 8j7z:B (2.72) BS16 KC1 ? GO:0009416 ... O65890 38071196
    791379 8j7z:B (2.72) BS17 CLA ? GO:0009416 ... O65890 38071196
    791380 8j7z:B (2.72) BS18 CLA ? GO:0009416 ... O65890 38071196
    791381 8j7z:B (2.72) BS19 CLA ? GO:0009416 ... O65890 38071196
    791382 8j7z:C (2.72) BS01 CLA ? GO:0009416 ... O65890 38071196
    791383 8j7z:C (2.72) BS02 CLA ? GO:0009416 ... O65890 38071196
    791384 8j7z:C (2.72) BS03 A86 ? GO:0009416 ... O65890 38071196
    791385 8j7z:C (2.72) BS04 A86 ? GO:0009416 ... O65890 38071196
    791386 8j7z:C (2.72) BS05 A86 ? GO:0009416 ... O65890 38071196
    791387 8j7z:C (2.72) BS06 A86 ? GO:0009416 ... O65890 38071196
    791388 8j7z:C (2.72) BS07 A86 ? GO:0009416 ... O65890 38071196
    791389 8j7z:C (2.72) BS08 A86 ? GO:0009416 ... O65890 38071196
    791390 8j7z:C (2.72) BS09 A86 ? GO:0009416 ... O65890 38071196
    791391 8j7z:C (2.72) BS10 CLA ? GO:0009416 ... O65890 38071196
    791392 8j7z:C (2.72) BS11 CLA ? GO:0009416 ... O65890 38071196
    791393 8j7z:C (2.72) BS12 KC2 ? GO:0009416 ... O65890 38071196
    791394 8j7z:C (2.72) BS13 CLA ? GO:0009416 ... O65890 38071196
    791395 8j7z:C (2.72) BS14 KC2 ? GO:0009416 ... O65890 38071196
    791396 8j7z:C (2.72) BS15 CLA ? GO:0009416 ... O65890 38071196
    791397 8j7z:C (2.72) BS16 CLA ? GO:0009416 ... O65890 38071196
    791398 8j7z:C (2.72) BS17 KC1 ? GO:0009416 ... O65890 38071196
    791399 8j7z:C (2.72) BS18 CLA ? GO:0009416 ... O65890 38071196
    791400 8j7z:C (2.72) BS19 CLA ? GO:0009416 ... O65890 38071196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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