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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42401 1qdb:B (1.9) BS05 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42402 1qdb:B (1.9) BS06 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42403 1qdb:C (1.9) BS01 CA 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42404 1qdb:C (1.9) BS02 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42405 1qdb:C (1.9) BS03 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42406 1qdb:C (1.9) BS04 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42407 1qdb:C (1.9) BS05 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42408 1qdb:C (1.9) BS06 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    42409 1qdc:A (2.0) BS01 MMA ? GO:0005537 ... P55915 10506175
    42410 1qdc:A (2.0) BS02 MAN ? GO:0005537 ... P55915 10506175
    42411 1qdc:A (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    42412 1qdc:A (2.0) BS04 CA ? GO:0005537 ... P55915 10506175
    42413 1qdc:B (2.0) BS01 MMA ? GO:0005537 ... P55915 10506175
    42414 1qdc:B (2.0) BS02 MAN ? GO:0005537 ... P55915 10506175
    42415 1qdc:B (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    42416 1qdc:B (2.0) BS04 CA ? GO:0005537 ... P55915 10506175
    42417 1qdc:C (2.0) BS01 MMA ? GO:0005537 ... P55915 10506175
    42418 1qdc:C (2.0) BS02 MAN ? GO:0005537 ... P55915 10506175
    42419 1qdc:C (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    42420 1qdc:C (2.0) BS04 CA ? GO:0005537 ... P55915 10506175
    42421 1qdc:D (2.0) BS01 MMA ? GO:0005537 ... P55915 10506175
    42422 1qdc:D (2.0) BS02 MAN ? GO:0005537 ... P55915 10506175
    42423 1qdc:D (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    42424 1qdc:D (2.0) BS04 CA ? GO:0005537 ... P55915 10506175
    42425 1qdd:A (1.3) BS01 GAL ? GO:0005515 ... P05451 10625646
    42426 1qdo:A (2.8) BS01 MAN ? GO:0005537 ... P55915 10506175
    42427 1qdo:A (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    42428 1qdo:A (2.8) BS03 CA ? GO:0005537 ... P55915 10506175
    42429 1qdo:B (2.8) BS01 MAN ? GO:0005537 ... P55915 10506175
    42430 1qdo:B (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    42431 1qdo:B (2.8) BS03 CA ? GO:0005537 ... P55915 10506175
    42432 1qdo:C (2.8) BS01 MAN ? GO:0005537 ... P55915 10506175
    42433 1qdo:C (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    42434 1qdo:C (2.8) BS03 CA ? GO:0005537 ... P55915 10506175
    42435 1qdo:D (2.8) BS01 MAN ? GO:0005537 ... P55915 10506175
    42436 1qdo:D (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    42437 1qdo:D (2.8) BS03 CA ? GO:0005537 ... P55915 10506175
    42438 1qdq:A (2.18) BS01 074 3.4.22.1 GO:0006508 ... P07688 10739956
    42439 1qds:A (2.0) BS01 PGA 5.3.1.1 GO:0004807 ... P48499 10785370 MOAD: Ki=0.048mM
    42440 1qdt:A (2.1) BS01 CA 4.2.2.n1 GO:0005509 ... P41052 10570954
    42441 1qdu:A (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42442 1qdu:B (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42443 1qdu:C (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42444 1qdu:D (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42445 1qdu:E (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42446 1qdu:F (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42447 1qdu:G (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42448 1qdu:H (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42449 1qdu:I (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42450 1qdu:J (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42451 1qdu:K (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42452 1qdu:L (2.8) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508784
    42453 1qe3:A (1.5) BS01 ZN 3.1.1.- GO:0004104 ... P37967 10535917
    42454 1qe5:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    42455 1qe5:B (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    42456 1qe5:B (2.2) BS02 CA 2.4.2.1 GO:0003824 ... P81989 10600382
    42457 1qe5:C (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    42458 1qew:A (2.2) BS01 peptide ? N/A P04439 N/A
    42459 1qez:A (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42460 1qez:B (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42461 1qez:C (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42462 1qez:D (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42463 1qez:E (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42464 1qez:F (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42465 1qez:F (2.7) BS02 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    42466 1qf0:A (2.2) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 10504225
    42467 1qf0:A (2.2) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42468 1qf0:A (2.2) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42469 1qf0:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42470 1qf0:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42471 1qf0:A (2.2) BS06 TI2 3.4.24.27 GO:0004222 ... P00800 10504225 MOAD: Ki=42nM
    PDBbind: -logKd/Ki=7.38, Ki=42nM
    42472 1qf1:A (2.0) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 10504225
    42473 1qf1:A (2.0) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42474 1qf1:A (2.0) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42475 1qf1:A (2.0) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42476 1qf1:A (2.0) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42477 1qf1:A (2.0) BS06 TI1 3.4.24.27 GO:0004222 ... P00800 10504225 MOAD: Ki=48nM
    PDBbind: -logKd/Ki=7.32, Ki=48nM
    42478 1qf2:A (2.06) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 10504225
    42479 1qf2:A (2.06) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42480 1qf2:A (2.06) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42481 1qf2:A (2.06) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42482 1qf2:A (2.06) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10504225
    42483 1qf2:A (2.06) BS06 TI3 3.4.24.27 GO:0004222 ... P00800 10504225 MOAD: Ki=1200nM
    PDBbind: -logKd/Ki=5.92, Ki=1200nM
    42484 1qf3:A (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    42485 1qf3:A (2.8) BS02 CA ? GO:0030246 ... P02872 10417405
    42486 1qf3:A (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    42487 1qf3:B (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    42488 1qf3:B (2.8) BS02 CA ? GO:0030246 ... P02872 10417405
    42489 1qf3:B (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    42490 1qf3:C (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    42491 1qf3:C (2.8) BS02 CA ? GO:0030246 ... P02872 10417405
    42492 1qf3:C (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    42493 1qf3:D (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    42494 1qf3:D (2.8) BS02 CA ? GO:0030246 ... P02872 10417405
    42495 1qf3:D (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    42496 1qf4:A (2.2) BS01 PO4 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    42497 1qf4:A (2.2) BS02 MG 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    42498 1qf4:A (2.2) BS03 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    42499 1qf4:A (2.2) BS04 RPD 6.3.4.4 GO:0000166 ... P0A7D4 10556888 MOAD: ic50=0.665uM
    PDBbind: -logKd/Ki=6.18, IC50=0.665uM
    42500 1qf5:A (2.0) BS01 PO4 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    42501 1qf5:A (2.0) BS02 MG 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    42502 1qf5:A (2.0) BS03 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    42503 1qf5:A (2.0) BS04 RPL 6.3.4.4 GO:0000166 ... P0A7D4 10556888 MOAD: ic50=0.043uM
    PDBbind: -logKd/Ki=7.37, IC50=0.043uM
    42504 1qf6:A (2.9) BS01 rna 6.1.1.3 GO:0000049 ... P0A8M3 10319817
    42505 1qf6:A (2.9) BS02 ZN 6.1.1.3 GO:0000049 ... P0A8M3 10319817
    42506 1qf6:A (2.9) BS03 AMP 6.1.1.3 GO:0000049 ... P0A8M3 10319817
    42507 1qf7:A (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    42508 1qf7:B (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    42509 1qf7:C (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    42510 1qf7:D (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    42511 1qf8:A (1.74) BS01 ZN 2.7.1.37 GO:0005956 ... P67870 10357806
    42512 1qf8:B (1.74) BS01 ZN 2.7.1.37 GO:0005956 ... P67870 10357806
    42513 1qf9:A (1.7) BS01 ALF 2.7.4.14 GO:0000287 ... P20425 10426946
    42514 1qf9:A (1.7) BS02 ADP 2.7.4.14 GO:0000287 ... P20425 10426946
    42515 1qf9:A (1.7) BS03 C5P 2.7.4.14 GO:0000287 ... P20425 10426946
    42516 1qfc:A (2.7) BS01 FE 3.1.3.2 GO:0003993 ... P29288 10388567
    42517 1qfc:A (2.7) BS02 FE 3.1.3.2 GO:0003993 ... P29288 10388567
    42518 1qfc:A (2.7) BS03 PO4 3.1.3.2 GO:0003993 ... P29288 10388567
    42519 1qfe:A (2.1) BS01 DHS 4.2.1.10 GO:0003855 ... P24670 10360352
    42520 1qfe:B (2.1) BS01 DHS 4.2.1.10 GO:0003855 ... P24670 10360352
    42521 1qff:A (2.7) BS01 FCI ? GO:0009279 ... P06971 10873859
    42522 1qfk:H (2.8) BS01 0Z6 3.4.21.21 GO:0004252 ... P08709 10430872
    42523 1qfk:H (2.8) BS02 CA 3.4.21.21 GO:0004252 ... P08709 10430872
    42524 1qfk:L (2.8) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 10430872
    42525 1qfl:A (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    42526 1qfl:B (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    42527 1qfl:C (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    42528 1qfl:D (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    42529 1qfm:A (1.4) BS01 SGL 3.4.21.26 GO:0004252 ... P23687 9695945
    42530 1qfm:A (1.4) BS02 SGL 3.4.21.26 GO:0004252 ... P23687 9695945
    42531 1qfn:A (-1.00) BS01 peptide ? GO:0000166 ... P68688 10493864
    42532 1qfo:A (1.85) BS01 SIA ? N/A Q62230 9660955
    42533 1qfo:B (1.85) BS01 SIA ? N/A Q62230 9660955
    42534 1qfo:C (1.85) BS01 SIA ? N/A Q62230 9660955
    42535 1qfq:B (-1.00) BS01 rna ? N/A P03045 10759866 PDBbind: Kd=20nM
    42536 1qfs:A (2.0) BS01 ZPR 3.4.21.26 GO:0004252 ... P23687 9695945 PDBbind: -logKd/Ki=9.48, IC50=0.33nM
    BindingDB: IC50=0.33nM
    42537 1qft:A (1.25) BS01 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    PDBbind: -logKd/Ki=8.77, Kd=1.7nM
    42538 1qft:A (1.25) BS02 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    PDBbind: -logKd/Ki=8.77, Kd=1.7nM
    42539 1qft:B (1.25) BS01 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    42540 1qft:B (1.25) BS02 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    42541 1qft:B (1.25) BS03 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    42542 1qfv:A (1.36) BS01 HSM ? GO:0005576 ... O77421 10360182
    42543 1qfv:B (1.36) BS01 HSM ? GO:0005576 ... O77421 10360182
    42544 1qfv:B (1.36) BS02 HSM ? GO:0005576 ... O77421 10360182
    42545 1qfy:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42546 1qfy:A (1.8) BS02 NAP 1.18.1.2 GO:0016491 ... P10933 10467097 MOAD: Kd<0.2uM
    42547 1qfy:B (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42548 1qfy:B (1.8) BS02 NAP 1.18.1.2 GO:0016491 ... P10933 10467097 MOAD: Kd<0.2uM
    42549 1qfz:A (1.7) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42550 1qfz:A (1.7) BS02 NDP 1.18.1.2 GO:0016491 ... P10933 10467097
    42551 1qfz:B (1.7) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42552 1qfz:B (1.7) BS02 NDP 1.18.1.2 GO:0016491 ... P10933 10467097
    42553 1qg0:A (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42554 1qg0:B (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42555 1qg1:E (-1.00) BS01 peptide ? N/A P62993 10356320
    42556 1qg2:A (2.5) BS01 GDP 3.6.5.- GO:0000054 ... P62825 10356329
    42557 1qg4:A (2.5) BS01 GDP 3.6.5.- GO:0000054 ... P62825 10356329
    42558 1qg4:B (2.5) BS01 GDP 3.6.5.- GO:0000054 ... P62825 10356329
    42559 1qg6:A (1.9) BS01 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10493822
    42560 1qg6:A (1.9) BS02 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10493822 MOAD: Kd=22pM
    BindingDB: IC50=430nM
    42561 1qg6:B (1.9) BS01 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10493822
    42562 1qg6:B (1.9) BS02 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10493822 MOAD: Kd=22pM
    BindingDB: IC50=430nM
    42563 1qg6:C (1.9) BS01 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10493822
    42564 1qg6:C (1.9) BS02 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10493822 MOAD: Kd=22pM
    BindingDB: IC50=430nM
    42565 1qg6:D (1.9) BS01 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10493822
    42566 1qg6:D (1.9) BS02 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10493822 MOAD: Kd=22pM
    BindingDB: IC50=430nM
    42567 1qga:A (2.0) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42568 1qga:A (2.0) BS02 NAP 1.18.1.2 GO:0016491 ... P10933 10467097 MOAD: Kd=5.5uM
    42569 1qga:B (2.0) BS01 FAD 1.18.1.2 GO:0016491 ... P10933 10467097
    42570 1qga:B (2.0) BS02 NAP 1.18.1.2 GO:0016491 ... P10933 10467097 MOAD: Kd=5.5uM
    42571 1qgc:1 (30.0) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15
    GO:0005198 ... P03311 9130694
    42572 1qgc:4 (30.0) BS01 peptide ? GO:0005576 ... P01837 9130694
    42573 1qgd:A (1.9) BS01 CA 2.2.1.1 GO:0000287 ... P27302 N/A
    42574 1qgd:A (1.9) BS02 SO4 2.2.1.1 GO:0000287 ... P27302 N/A
    42575 1qgd:A (1.9) BS03 TPP 2.2.1.1 GO:0000287 ... P27302 N/A
    42576 1qgd:A (1.9) BS04 TPP 2.2.1.1 GO:0000287 ... P27302 N/A
    42577 1qgd:B (1.9) BS01 TPP 2.2.1.1 GO:0000287 ... P27302 N/A
    42578 1qgd:B (1.9) BS02 SO4 2.2.1.1 GO:0000287 ... P27302 N/A
    42579 1qgd:B (1.9) BS03 CA 2.2.1.1 GO:0000287 ... P27302 N/A
    42580 1qgd:B (1.9) BS04 TPP 2.2.1.1 GO:0000287 ... P27302 N/A
    42581 1qge:E (1.7) BS01 CA 3.1.1.3 N/A P0DUB9 N/A
    42582 1qgf:A (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 10387042
    42583 1qgf:A (1.7) BS02 TPX 3.4.21.36 GO:0004252 ... P00772 10387042
    42584 1qgh:A (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42585 1qgh:A (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42586 1qgh:B (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42587 1qgh:B (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42588 1qgh:C (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42589 1qgh:C (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42590 1qgh:D (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42591 1qgh:D (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42592 1qgh:E (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42593 1qgh:E (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42594 1qgh:F (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42595 1qgh:F (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42596 1qgh:G (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42597 1qgh:G (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42598 1qgh:H (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42599 1qgh:H (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42600 1qgh:I (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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