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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39001 1p2d:A (1.94) BS02 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    39002 1p2d:A (1.94) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 12930991
    39003 1p2e:A (2.2) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39004 1p2e:A (2.2) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39005 1p2e:A (2.2) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39006 1p2e:A (2.2) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39007 1p2e:A (2.2) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 14609326
    39008 1p2e:A (2.2) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39009 1p2g:A (2.3) BS01 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    39010 1p2g:A (2.3) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 12930991
    39011 1p2h:A (2.1) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39012 1p2h:A (2.1) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39013 1p2h:A (2.1) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39014 1p2h:A (2.1) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    39015 1p2h:A (2.1) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 14609326
    39016 1p2h:A (2.1) BS06 TEO 1.3.2.4 GO:0008202 ... P0C278 14609326
    39017 1p2i:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    39018 1p2j:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    39019 1p2k:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    39020 1p2p:A (2.6) BS01 CA 3.1.1.4 GO:0002446 ... P00592 6876174
    39021 1p2p:A (2.6) BS02 CA 3.1.1.4 GO:0002446 ... P00592 6876174
    39022 1p2s:A (2.45) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    39023 1p2s:A (2.45) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    39024 1p2s:A (2.45) BS03 ETF 3.6.5.2 GO:0003924 ... P01112 12842038
    39025 1p2t:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    39026 1p2t:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    39027 1p2u:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    39028 1p2u:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    39029 1p2v:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    39030 1p2v:A (2.3) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    39031 1p2y:A (2.3) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14556625
    39032 1p2y:A (2.3) BS02 NCT 1.14.15.1 GO:0004497 ... P00183 14556625
    39033 1p31:A (1.85) BS01 EPU 6.3.2.8 GO:0005524 ... P45066 12837790
    39034 1p31:B (1.85) BS01 EPU 6.3.2.8 GO:0005524 ... P45066 12837790
    39035 1p33:A (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    39036 1p33:A (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    39037 1p33:B (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    39038 1p33:B (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    39039 1p33:C (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    39040 1p33:C (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    39041 1p33:D (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    39042 1p33:D (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    39043 1p34:A (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    39044 1p34:A (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    39045 1p34:B (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    39046 1p34:B (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    39047 1p34:C (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    39048 1p34:C (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    39049 1p34:D (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    39050 1p34:D (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    39051 1p34:E (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    39052 1p34:E (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    39053 1p34:F (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    39054 1p34:F (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    39055 1p34:G (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    39056 1p34:G (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    39057 1p34:H (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    39058 1p34:H (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    39059 1p39:A (2.0) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    39060 1p39:A (2.0) BS02 MGT 2.1.1.57 GO:0003723 ... P07617 9145102
    39061 1p3a:A (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    39062 1p3a:A (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    39063 1p3a:B (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    39064 1p3a:B (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    39065 1p3a:C (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    39066 1p3a:C (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    39067 1p3a:D (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    39068 1p3a:D (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    39069 1p3a:E (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    39070 1p3a:E (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    39071 1p3a:F (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    39072 1p3a:F (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    39073 1p3a:G (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    39074 1p3a:G (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    39075 1p3a:H (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    39076 1p3a:H (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    39077 1p3b:A (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    39078 1p3b:A (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    39079 1p3b:B (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    39080 1p3b:B (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    39081 1p3b:C (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    39082 1p3b:C (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    39083 1p3b:D (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    39084 1p3b:D (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    39085 1p3b:E (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    39086 1p3b:E (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    39087 1p3b:F (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    39088 1p3b:F (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    39089 1p3b:G (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    39090 1p3b:G (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    39091 1p3b:H (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    39092 1p3b:H (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    39093 1p3d:A (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    39094 1p3d:A (1.7) BS02 UMA 6.3.2.8 GO:0005524 ... P45066 12837790
    39095 1p3d:A (1.7) BS03 ANP 6.3.2.8 GO:0005524 ... P45066 12837790
    39096 1p3d:B (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    39097 1p3d:B (1.7) BS02 UMA 6.3.2.8 GO:0005524 ... P45066 12837790
    39098 1p3d:B (1.7) BS03 ANP 6.3.2.8 GO:0005524 ... P45066 12837790
    39099 1p3f:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    39100 1p3f:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    39101 1p3f:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    39102 1p3f:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    39103 1p3f:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    39104 1p3f:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    39105 1p3f:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    39106 1p3f:D (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    39107 1p3f:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    39108 1p3f:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    39109 1p3f:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    39110 1p3f:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    39111 1p3f:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    39112 1p3f:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    39113 1p3f:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    39114 1p3f:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    39115 1p3g:A (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    39116 1p3g:A (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    39117 1p3g:B (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    39118 1p3g:B (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    39119 1p3g:C (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    39120 1p3g:C (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    39121 1p3g:D (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    39122 1p3g:D (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    39123 1p3g:E (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    39124 1p3g:E (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    39125 1p3g:F (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    39126 1p3g:F (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    39127 1p3g:G (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    39128 1p3g:G (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    39129 1p3g:H (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    39130 1p3g:H (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    39131 1p3i:A (2.3) BS01 dna ? GO:0000786 ... P84233 14739929
    39132 1p3i:A (2.3) BS02 dna ? GO:0000786 ... P84233 14739929
    39133 1p3i:B (2.3) BS01 dna ? GO:0000786 ... P62799 14739929
    39134 1p3i:B (2.3) BS02 dna ? GO:0000786 ... P62799 14739929
    39135 1p3i:C (2.3) BS01 dna ? GO:0000786 ... P06897 14739929
    39136 1p3i:C (2.3) BS02 dna ? GO:0000786 ... P06897 14739929
    39137 1p3i:D (2.3) BS01 dna ? GO:0000786 ... P02281 14739929
    39138 1p3i:D (2.3) BS02 dna ? GO:0000786 ... P02281 14739929
    39139 1p3i:E (2.3) BS01 dna ? GO:0000786 ... P84233 14739929
    39140 1p3i:E (2.3) BS02 dna ? GO:0000786 ... P84233 14739929
    39141 1p3i:F (2.3) BS01 dna ? GO:0000786 ... P62799 14739929
    39142 1p3i:F (2.3) BS02 dna ? GO:0000786 ... P62799 14739929
    39143 1p3i:G (2.3) BS01 dna ? GO:0000786 ... P06897 14739929
    39144 1p3i:G (2.3) BS02 dna ? GO:0000786 ... P06897 14739929
    39145 1p3i:H (2.3) BS01 dna ? GO:0000786 ... P02281 14739929
    39146 1p3i:H (2.3) BS02 dna ? GO:0000786 ... P02281 14739929
    39147 1p3j:A (1.9) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 15100224
    39148 1p3j:A (1.9) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 15100224
    39149 1p3k:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    39150 1p3k:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    39151 1p3k:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    39152 1p3k:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    39153 1p3k:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    39154 1p3k:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    39155 1p3k:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    39156 1p3k:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    39157 1p3k:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    39158 1p3k:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    39159 1p3k:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    39160 1p3k:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    39161 1p3k:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    39162 1p3k:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    39163 1p3k:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    39164 1p3l:A (2.4) BS01 dna ? GO:0000786 ... P84233 14739929
    39165 1p3l:A (2.4) BS02 dna ? GO:0000786 ... P84233 14739929
    39166 1p3l:B (2.4) BS01 dna ? GO:0000786 ... P62799 14739929
    39167 1p3l:B (2.4) BS02 dna ? GO:0000786 ... P62799 14739929
    39168 1p3l:C (2.4) BS01 dna ? GO:0000786 ... P06897 14739929
    39169 1p3l:C (2.4) BS02 dna ? GO:0000786 ... P06897 14739929
    39170 1p3l:D (2.4) BS01 dna ? GO:0000786 ... P02281 14739929
    39171 1p3l:D (2.4) BS02 dna ? GO:0000786 ... P02281 14739929
    39172 1p3l:E (2.4) BS01 dna ? GO:0000786 ... P84233 14739929
    39173 1p3l:E (2.4) BS02 dna ? GO:0000786 ... P84233 14739929
    39174 1p3l:F (2.4) BS01 dna ? GO:0000786 ... P62799 14739929
    39175 1p3l:F (2.4) BS02 dna ? GO:0000786 ... P62799 14739929
    39176 1p3l:G (2.4) BS01 dna ? GO:0000786 ... P06897 14739929
    39177 1p3l:G (2.4) BS02 dna ? GO:0000786 ... P06897 14739929
    39178 1p3l:H (2.4) BS01 dna ? GO:0000786 ... P02281 14739929
    39179 1p3l:H (2.4) BS02 dna ? GO:0000786 ... P02281 14739929
    39180 1p3m:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    39181 1p3m:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    39182 1p3m:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    39183 1p3m:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    39184 1p3m:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    39185 1p3m:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    39186 1p3m:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    39187 1p3m:D (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    39188 1p3m:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    39189 1p3m:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    39190 1p3m:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    39191 1p3m:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    39192 1p3m:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    39193 1p3m:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    39194 1p3m:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    39195 1p3m:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    39196 1p3o:A (2.75) BS01 dna ? GO:0000786 ... P84233 14739929
    39197 1p3o:A (2.75) BS02 dna ? GO:0000786 ... P84233 14739929
    39198 1p3o:B (2.75) BS01 dna ? GO:0000786 ... P62799 14739929
    39199 1p3o:B (2.75) BS02 dna ? GO:0000786 ... P62799 14739929
    39200 1p3o:C (2.75) BS01 dna ? GO:0000786 ... P06897 14739929
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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