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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33601 1n5w:A (1.5) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33602 1n5w:A (1.5) BS03 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33603 1n5w:B (1.5) BS01 CUM 1.2.5.3 GO:0005506 ... P19919 12475995
    33604 1n5w:B (1.5) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33605 1n5w:C (1.5) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33606 1n5w:D (1.5) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33607 1n5w:D (1.5) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33608 1n5w:D (1.5) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33609 1n5w:D (1.5) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33610 1n5w:E (1.5) BS01 CUM 1.2.5.3 GO:0005506 ... P19919 12475995
    33611 1n5w:E (1.5) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33612 1n5w:F (1.5) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33613 1n5x:A (2.8) BS01 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33614 1n5x:A (2.8) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33615 1n5x:A (2.8) BS03 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33616 1n5x:A (2.8) BS04 TEI 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831 BindingDB: IC50=10.0nM, Ki=120nM
    33617 1n5x:B (2.8) BS01 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33618 1n5x:B (2.8) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33619 1n5x:B (2.8) BS03 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33620 1n5x:B (2.8) BS04 TEI 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831 BindingDB: IC50=10.0nM, Ki=120nM
    33621 1n5y:A (3.1) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33622 1n5y:A (3.1) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33623 1n5y:A (3.1) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33624 1n5z:A (2.7) BS01 peptide ? N/A P80667 12453410
    33625 1n5z:B (2.7) BS01 peptide ? N/A P80667 12453410
    33626 1n60:A (1.19) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33627 1n60:A (1.19) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33628 1n60:A (1.19) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33629 1n60:A (1.19) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33630 1n60:B (1.19) BS01 OMO 1.2.5.3 GO:0005506 ... P19919 12475995
    33631 1n60:B (1.19) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33632 1n60:C (1.19) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33633 1n60:D (1.19) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33634 1n60:D (1.19) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33635 1n60:D (1.19) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33636 1n60:D (1.19) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33637 1n60:E (1.19) BS01 OMO 1.2.5.3 GO:0005506 ... P19919 12475995
    33638 1n60:E (1.19) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33639 1n60:F (1.19) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33640 1n61:A (1.3) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33641 1n61:A (1.3) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33642 1n61:A (1.3) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33643 1n61:A (1.3) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33644 1n61:B (1.3) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33645 1n61:B (1.3) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33646 1n61:C (1.3) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33647 1n61:D (1.3) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33648 1n61:D (1.3) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33649 1n61:D (1.3) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33650 1n61:E (1.3) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33651 1n61:E (1.3) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33652 1n61:F (1.3) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33653 1n62:A (1.09) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33654 1n62:A (1.09) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33655 1n62:A (1.09) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33656 1n62:A (1.09) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33657 1n62:B (1.09) BS01 CUB 1.2.5.3 GO:0005506 ... P19919 12475995
    33658 1n62:B (1.09) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33659 1n62:C (1.09) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33660 1n62:D (1.09) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33661 1n62:D (1.09) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33662 1n62:D (1.09) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33663 1n62:D (1.09) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33664 1n62:E (1.09) BS01 CUB 1.2.5.3 GO:0005506 ... P19919 12475995
    33665 1n62:E (1.09) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33666 1n62:F (1.09) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33667 1n63:A (1.21) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33668 1n63:A (1.21) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33669 1n63:A (1.21) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33670 1n63:A (1.21) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33671 1n63:B (1.21) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33672 1n63:B (1.21) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33673 1n63:C (1.21) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33674 1n63:D (1.21) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33675 1n63:D (1.21) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33676 1n63:D (1.21) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33677 1n63:D (1.21) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33678 1n63:E (1.21) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33679 1n63:E (1.21) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33680 1n63:F (1.21) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33681 1n65:A (-1.00) BS01 CE ? GO:0005499 ... P02633 14596622
    33682 1n67:A (1.9) BS01 MG ? GO:0005618 ... Q53653 12485987
    33683 1n67:A (1.9) BS02 MG ? GO:0005618 ... Q53653 12485987
    33684 1n67:A (1.9) BS03 MG ? GO:0005618 ... Q53653 12485987
    33685 1n68:A (1.7) BS01 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33686 1n68:A (1.7) BS02 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33687 1n68:A (1.7) BS03 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33688 1n68:A (1.7) BS04 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33689 1n68:A (1.7) BS05 C2C 1.16.3.4 GO:0004322 ... P36649 12794077
    33690 1n6a:A (1.7) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    33691 1n6b:A (2.3) BS01 HEM 1.14.14.1 GO:0004497 ... P00179 12767218
    33692 1n6b:A (2.3) BS02 DMZ 1.14.14.1 GO:0004497 ... P00179 12767218 MOAD: Kd=20uM
    33693 1n6c:A (2.3) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    33694 1n6d:A (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33695 1n6d:A (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33696 1n6d:A (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33697 1n6d:B (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33698 1n6d:B (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33699 1n6d:B (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33700 1n6d:C (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33701 1n6d:C (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33702 1n6d:C (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33703 1n6d:D (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33704 1n6d:D (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33705 1n6d:D (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33706 1n6d:E (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33707 1n6d:E (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33708 1n6d:E (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33709 1n6d:F (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33710 1n6d:F (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33711 1n6d:F (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33712 1n6e:A (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33713 1n6e:A (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33714 1n6e:C (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33715 1n6e:C (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33716 1n6e:E (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33717 1n6e:E (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33718 1n6e:G (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33719 1n6e:G (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33720 1n6e:I (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33721 1n6e:I (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33722 1n6e:K (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33723 1n6e:K (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33724 1n6f:A (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33725 1n6f:B (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33726 1n6f:C (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33727 1n6f:D (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33728 1n6f:E (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33729 1n6f:F (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33730 1n6h:A (1.51) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33731 1n6h:A (1.51) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916
    33732 1n6i:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33733 1n6i:A (1.6) BS02 GDP 3.6.5.2 GO:0003924 ... P20339 12433916
    33734 1n6j:A (2.2) BS01 dna ? GO:0000977 ... Q02080 12700764
    33735 1n6j:A (2.2) BS02 dna ? GO:0000977 ... Q02080 12700764
    33736 1n6j:A (2.2) BS03 peptide ? GO:0000977 ... Q02080 12700764
    33737 1n6j:B (2.2) BS01 dna ? GO:0000977 ... Q02080 12700764
    33738 1n6j:B (2.2) BS02 dna ? GO:0000977 ... Q02080 12700764
    33739 1n6j:B (2.2) BS03 peptide ? GO:0000977 ... Q02080 12700764
    33740 1n6k:A (1.55) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33741 1n6k:A (1.55) BS02 GDP 3.6.5.2 GO:0003924 ... P20339 12433916
    33742 1n6k:A (1.55) BS03 AF3 3.6.5.2 GO:0003924 ... P20339 12433916
    33743 1n6l:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33744 1n6l:A (1.6) BS02 GTP 3.6.5.2 GO:0003924 ... P20339 12433916
    33745 1n6m:A (2.5) BS01 ADP 3.6.4.- GO:0003777 ... P20480 14532111
    33746 1n6m:B (2.5) BS01 ADP 3.6.4.- GO:0003777 ... P20480 14532111
    33747 1n6n:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33748 1n6n:A (1.6) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916
    33749 1n6o:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33750 1n6o:A (1.8) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916
    33751 1n6p:A (1.54) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33752 1n6p:A (1.54) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916
    33753 1n6q:A (3.0) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33754 1n6q:A (3.0) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33755 1n6q:A (3.0) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33756 1n6q:A (3.0) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33757 1n6r:A (1.55) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33758 1n6r:A (1.55) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916
    33759 1n6x:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 12575941
    33760 1n6x:A (1.4) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 12575941
    33761 1n6y:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 12575941
    33762 1n6y:A (1.4) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 12575941
    33763 1n70:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33764 1n70:A (1.6) BS02 MG 1.7.2.1 GO:0005507 ... Q53239 N/A
    33765 1n71:A (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    33766 1n71:B (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    33767 1n71:C (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    33768 1n71:D (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    33769 1n73:B (2.9) BS01 peptide ? GO:0005102 ... P02678 12501189
    33770 1n73:B (2.9) BS02 CA ? GO:0005102 ... P02678 12501189
    33771 1n73:C (2.9) BS01 peptide ? GO:0007596 ... P04115 12501189
    33772 1n73:C (2.9) BS02 CA ? GO:0007596 ... P04115 12501189
    33773 1n73:E (2.9) BS01 peptide ? GO:0005102 ... P02678 12501189
    33774 1n73:E (2.9) BS02 CA ? GO:0005102 ... P02678 12501189
    33775 1n73:F (2.9) BS01 peptide ? GO:0007596 ... P04115 12501189
    33776 1n73:F (2.9) BS02 CA ? GO:0007596 ... P04115 12501189
    33777 1n75:A (1.9) BS01 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    33778 1n76:A (3.4) BS01 FE 3.4.21.- GO:0001503 ... P02788 N/A
    33779 1n76:A (3.4) BS02 FE 3.4.21.- GO:0001503 ... P02788 N/A
    33780 1n76:A (3.4) BS03 CO3 3.4.21.- GO:0001503 ... P02788 N/A
    33781 1n76:A (3.4) BS04 CO3 3.4.21.- GO:0001503 ... P02788 N/A
    33782 1n77:A (2.4) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Kd=90uM
    33783 1n77:A (2.4) BS02 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    33784 1n77:B (2.4) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Kd=90uM
    33785 1n77:B (2.4) BS02 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    33786 1n78:A (2.1) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Ki=3uM
    33787 1n78:A (2.1) BS02 GOM 6.1.1.17 GO:0000049 ... P27000 12554668
    33788 1n78:B (2.1) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Ki=3uM
    33789 1n78:B (2.1) BS02 GOM 6.1.1.17 GO:0000049 ... P27000 12554668
    33790 1n7d:A (3.7) BS01 CA ? GO:0005509 ... P01130 12459547
    33791 1n7d:A (3.7) BS02 CA ? GO:0005509 ... P01130 12459547
    33792 1n7d:A (3.7) BS03 CA ? GO:0005509 ... P01130 12459547
    33793 1n7d:A (3.7) BS04 CA ? GO:0005509 ... P01130 12459547
    33794 1n7d:A (3.7) BS05 CA ? GO:0005509 ... P01130 12459547
    33795 1n7d:A (3.7) BS06 CA ? GO:0005509 ... P01130 12459547
    33796 1n7d:A (3.7) BS07 CA ? GO:0005509 ... P01130 12459547
    33797 1n7d:A (3.7) BS08 CA ? GO:0005509 ... P01130 12459547
    33798 1n7d:A (3.7) BS09 KEG ? GO:0005509 ... P01130 12459547
    33799 1n7f:A (1.8) BS01 peptide ? N/A P97879 12493751
    33800 1n7f:B (1.8) BS01 peptide ? N/A P97879 12493751

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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