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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30801 1m70:B (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    30802 1m70:B (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    30803 1m70:C (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    30804 1m70:C (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    30805 1m70:D (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    30806 1m70:D (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    30807 1m72:A (2.3) BS01 peptide 3.4.22.- GO:0004197 ... P89116 14645217
    30808 1m72:B (2.3) BS01 peptide 3.4.22.- GO:0004197 ... P89116 14645217
    30809 1m72:C (2.3) BS01 peptide 3.4.22.- GO:0004197 ... P89116 14645217
    30810 1m74:A (3.0) BS01 ADP 7.4.2.8 GO:0005524 ... P28366 12242434 PDBbind: -logKd/Ki=7.00, Kd=100nM
    30811 1m75:A (2.3) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    30812 1m75:A (2.3) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    30813 1m75:B (2.3) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    30814 1m75:B (2.3) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    30815 1m76:A (2.15) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    30816 1m76:A (2.15) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    30817 1m76:B (2.15) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    30818 1m76:B (2.15) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    30819 1m78:A (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    30820 1m78:A (1.71) BS02 CLZ 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=52nM
    30821 1m78:B (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    30822 1m78:B (1.71) BS02 CLZ 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=52nM
    30823 1m79:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    30824 1m79:A (1.7) BS02 MQ1 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=320nM
    30825 1m79:B (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    30826 1m79:B (1.7) BS02 MQ1 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=320nM
    30827 1m7a:A (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    30828 1m7a:A (1.76) BS02 MQU 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=9nM
    30829 1m7a:B (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    30830 1m7a:B (1.76) BS02 MQU 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=9nM
    30831 1m7b:A (2.0) BS01 MG ? GO:0003924 ... P61587 12163169
    30832 1m7b:A (2.0) BS02 GTP ? GO:0003924 ... P61587 12163169
    30833 1m7d:A (2.3) BS01 MAG ? GO:0046872 ... A2NHM3 12427018 PDBbind: -logKd/Ki=6.23, Kd=0.59uM
    30834 1m7d:B (2.3) BS01 RAE ? GO:0002250 ... P01801 12427018 PDBbind: -logKd/Ki=6.23, Kd=0.59uM
    30835 1m7e:A (2.45) BS01 peptide ? N/A P98078 12826668
    30836 1m7e:B (2.45) BS01 peptide ? N/A P98078 12826668
    30837 1m7e:C (2.45) BS01 peptide ? N/A P98078 12826668
    30838 1m7g:A (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30839 1m7g:A (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30840 1m7g:A (1.43) BS03 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30841 1m7g:A (1.43) BS04 AV2 2.7.1.25 GO:0000103 ... Q12657 12427029
    30842 1m7g:A (1.43) BS05 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    30843 1m7g:B (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30844 1m7g:B (1.43) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    30845 1m7g:B (1.43) BS03 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    30846 1m7g:C (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30847 1m7g:C (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30848 1m7g:C (1.43) BS03 AV2 2.7.1.25 GO:0000103 ... Q12657 12427029
    30849 1m7g:C (1.43) BS04 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    30850 1m7g:D (1.43) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    30851 1m7g:D (1.43) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    30852 1m7h:A (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30853 1m7h:A (2.0) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    30854 1m7h:B (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    30855 1m7h:B (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    30856 1m7h:C (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    30857 1m7h:C (2.0) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    30858 1m7h:D (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    30859 1m7h:D (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    30860 1m7i:B (2.5) BS01 RAM ? GO:0002250 ... P01801 12427018 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    30861 1m7j:A (1.5) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 12454005
    30862 1m7j:A (1.5) BS02 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 12454005
    30863 1m7p:A (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    30864 1m7p:B (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    30865 1m7q:A (2.4) BS01 DQO 2.7.11.24 GO:0000077 ... Q16539 12482439 MOAD: ic50=2.6nM
    PDBbind: -logKd/Ki=8.59, IC50=2.6nM
    BindingDB: IC50=2.6nM
    30866 1m7s:A (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    30867 1m7s:B (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    30868 1m7s:C (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    30869 1m7s:D (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    30870 1m7v:A (1.95) BS01 ARG 1.14.14.47 GO:0004517 ... O34453 12220171
    30871 1m7v:A (1.95) BS02 HEM 1.14.14.47 GO:0004517 ... O34453 12220171
    30872 1m7v:A (1.95) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    30873 1m7y:A (1.6) BS01 PPG 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 12228256 PDBbind: -logKd/Ki=10.96, Kd=0.011nM
    30874 1m7z:A (2.14) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 12220171
    30875 1m7z:A (2.14) BS02 HAR 1.14.14.47 GO:0004517 ... O34453 12220171
    30876 1m7z:A (2.14) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    30877 1m83:A (2.2) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451 MOAD: Kd=0.4mM
    PDBbind: -logKd/Ki=3.40, Kd=0.4mM
    30878 1m85:A (2.0) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 7791219
    30879 1m8d:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30880 1m8d:A (2.35) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30881 1m8d:A (2.35) BS03 CLW 1.14.13.39 GO:0004517 ... P29477 12437348 MOAD: Kd~4.3uM
    30882 1m8d:B (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30883 1m8d:B (2.35) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30884 1m8d:B (2.35) BS03 CLW 1.14.13.39 GO:0004517 ... P29477 12437348 MOAD: Kd~4.3uM
    30885 1m8e:A (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30886 1m8e:A (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30887 1m8e:A (2.9) BS03 7NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    30888 1m8e:B (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30889 1m8e:B (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30890 1m8e:B (2.9) BS03 7NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    30891 1m8f:A (2.4) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    30892 1m8g:A (2.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    30893 1m8h:A (2.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30894 1m8h:A (2.85) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30895 1m8h:A (2.85) BS03 6NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    30896 1m8h:B (2.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30897 1m8h:B (2.85) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30898 1m8h:B (2.85) BS03 6NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    30899 1m8i:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30900 1m8i:A (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30901 1m8i:A (2.7) BS03 5NI 1.14.13.39 GO:0004517 ... P29477 12437348
    30902 1m8i:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    30903 1m8i:B (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    30904 1m8i:B (2.7) BS03 5NI 1.14.13.39 GO:0004517 ... P29477 12437348
    30905 1m8j:A (2.4) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    30906 1m8k:A (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    30907 1m8k:B (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    30908 1m8k:C (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    30909 1m8p:A (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    30910 1m8p:B (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    30911 1m8p:C (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    30912 1m8r:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    30913 1m8s:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    30914 1m8t:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    30915 1m8t:B (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    30916 1m8t:C (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    30917 1m8t:D (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    30918 1m8t:E (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    30919 1m8t:F (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    30920 1m8v:A (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30921 1m8v:A (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30922 1m8v:B (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30923 1m8v:B (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30924 1m8v:C (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30925 1m8v:C (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30926 1m8v:D (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30927 1m8v:D (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30928 1m8v:E (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30929 1m8v:E (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30930 1m8v:F (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30931 1m8v:F (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30932 1m8v:G (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30933 1m8v:G (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30934 1m8v:H (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30935 1m8v:H (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30936 1m8v:I (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30937 1m8v:I (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30938 1m8v:J (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30939 1m8v:J (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30940 1m8v:K (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30941 1m8v:K (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30942 1m8v:L (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30943 1m8v:L (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30944 1m8v:M (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30945 1m8v:M (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30946 1m8v:M (2.6) BS03 U ? GO:0000398 ... Q9V0Y8 12409299
    30947 1m8v:N (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    30948 1m8v:N (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    30949 1m8w:A (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    30950 1m8w:A (2.2) BS02 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    30951 1m8w:B (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    30952 1m8w:B (2.2) BS02 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    30953 1m8x:A (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    30954 1m8x:B (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    30955 1m8y:A (2.6) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=160nM
    30956 1m8y:B (2.6) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=160nM
    30957 1m90:1 (2.8) BS01 rna ? GO:0003735 ... P60619 12185246
    30958 1m90:2 (2.8) BS01 rna ? GO:0003723 ... P32410 12185246
    30959 1m90:3 (2.8) BS01 rna ? GO:0003735 ... P22452 12185246
    30960 1m90:4 (2.8) BS01 rna ? GO:0000049 ... P32411 12185246
    30961 1m90:4 (2.8) BS02 MG ? GO:0000049 ... P32411 12185246
    30962 1m90:C (2.8) BS01 rna ? GO:0002181 ... P20276 12185246
    30963 1m90:D (2.8) BS01 rna ? GO:0003723 ... P20279 12185246
    30964 1m90:E (2.8) BS01 rna ? GO:0003723 ... P12735 12185246
    30965 1m90:F (2.8) BS01 rna ? GO:0000049 ... P14124 12185246
    30966 1m90:F (2.8) BS02 rna ? GO:0000049 ... P14124 12185246
    30967 1m90:G (2.8) BS01 rna ? GO:0002181 ... P14135 12185246
    30968 1m90:H (2.8) BS01 rna ? GO:0001682 ... P12743 12185246
    30969 1m90:J (2.8) BS01 rna ? GO:0000027 ... P60617 12185246
    30970 1m90:K (2.8) BS01 rna ? GO:0003729 ... P29198 12185246
    30971 1m90:L (2.8) BS01 rna ? GO:0003735 ... P22450 12185246
    30972 1m90:M (2.8) BS01 rna ? GO:0003735 ... P12737 12185246
    30973 1m90:N (2.8) BS01 rna ? GO:0002181 ... P60618 12185246
    30974 1m90:O (2.8) BS01 rna ? GO:0000027 ... P14123 12185246
    30975 1m90:O (2.8) BS02 rna ? GO:0000027 ... P14123 12185246
    30976 1m90:P (2.8) BS01 rna ? GO:0003723 ... P12733 12185246
    30977 1m90:Q (2.8) BS01 rna ? GO:0003723 ... P14119 12185246
    30978 1m90:R (2.8) BS01 rna ? GO:0003735 ... P12734 12185246
    30979 1m90:R (2.8) BS02 rna ? GO:0003735 ... P12734 12185246
    30980 1m90:S (2.8) BS01 rna ? GO:0002181 ... P10970 12185246
    30981 1m90:T (2.8) BS01 rna ? GO:0000027 ... P12732 12185246
    30982 1m90:U (2.8) BS01 rna ? GO:0002181 ... P10972 12185246
    30983 1m90:U (2.8) BS02 MG ? GO:0002181 ... P10972 12185246
    30984 1m90:V (2.8) BS01 rna ? GO:0003735 ... P14116 12185246
    30985 1m90:W (2.8) BS01 rna ? GO:0003735 ... P10971 12185246
    30986 1m90:X (2.8) BS01 rna ? GO:0000463 ... P14121 12185246
    30987 1m90:X (2.8) BS02 rna ? GO:0000463 ... P14121 12185246
    30988 1m90:Y (2.8) BS01 rna ? GO:0002181 ... P18138 12185246
    30989 1m90:Z (2.8) BS01 rna ? GO:0000166 ... P12736 12185246
    30990 1m90:Z (2.8) BS02 MG ? GO:0000166 ... P12736 12185246
    30991 1m99:A (2.3) BS01 GTS 2.5.1.18 GO:0004364 ... P08515 12596270
    30992 1m9a:A (2.1) BS01 GTX 2.5.1.18 GO:0004364 ... P08515 12596270
    30993 1m9b:A (2.6) BS01 IBG 2.5.1.18 GO:0004364 ... P08515 12596270
    30994 1m9h:A (2.0) BS01 NAD 1.1.1.346 GO:0005737 ... P06632 14718658
    30995 1m9i:A (2.65) BS01 CA ? GO:0001786 ... P08133 12534274
    30996 1m9i:A (2.65) BS02 CA ? GO:0001786 ... P08133 12534274
    30997 1m9i:A (2.65) BS03 CA ? GO:0001786 ... P08133 12534274
    30998 1m9i:A (2.65) BS04 CA ? GO:0001786 ... P08133 12534274
    30999 1m9i:A (2.65) BS05 CA ? GO:0001786 ... P08133 12534274
    31000 1m9j:A (2.43) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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