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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30201 1m1j:C (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    30202 1m1j:C (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    30203 1m1j:E (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    30204 1m1j:E (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    30205 1m1j:F (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    30206 1m1j:F (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    30207 1m1k:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12150912
    30208 1m1k:1 (3.2) BS02 MG ? GO:0003735 ... P60619 12150912
    30209 1m1k:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12150912
    30210 1m1k:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12150912
    30211 1m1k:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12150912
    30212 1m1k:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12150912
    30213 1m1k:C (3.2) BS01 rna ? GO:0002181 ... P20276 12150912
    30214 1m1k:C (3.2) BS02 MG ? GO:0002181 ... P20276 12150912
    30215 1m1k:D (3.2) BS01 rna ? GO:0003723 ... P20279 12150912
    30216 1m1k:E (3.2) BS01 rna ? GO:0003723 ... P12735 12150912
    30217 1m1k:F (3.2) BS01 rna ? GO:0000049 ... P14124 12150912
    30218 1m1k:F (3.2) BS02 rna ? GO:0000049 ... P14124 12150912
    30219 1m1k:G (3.2) BS01 rna ? GO:0002181 ... P14135 12150912
    30220 1m1k:H (3.2) BS01 rna ? GO:0001682 ... P12743 12150912
    30221 1m1k:J (3.2) BS01 rna ? GO:0000027 ... P60617 12150912
    30222 1m1k:K (3.2) BS01 rna ? GO:0003729 ... P29198 12150912
    30223 1m1k:L (3.2) BS01 rna ? GO:0003735 ... P22450 12150912
    30224 1m1k:M (3.2) BS01 rna ? GO:0003735 ... P12737 12150912
    30225 1m1k:N (3.2) BS01 rna ? GO:0002181 ... P60618 12150912
    30226 1m1k:O (3.2) BS01 rna ? GO:0000027 ... P14123 12150912
    30227 1m1k:O (3.2) BS02 rna ? GO:0000027 ... P14123 12150912
    30228 1m1k:P (3.2) BS01 rna ? GO:0003723 ... P12733 12150912
    30229 1m1k:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12150912
    30230 1m1k:R (3.2) BS01 rna ? GO:0003735 ... P12734 12150912
    30231 1m1k:R (3.2) BS02 rna ? GO:0003735 ... P12734 12150912
    30232 1m1k:S (3.2) BS01 rna ? GO:0002181 ... P10970 12150912
    30233 1m1k:T (3.2) BS01 rna ? GO:0000027 ... P12732 12150912
    30234 1m1k:U (3.2) BS01 rna ? GO:0002181 ... P10972 12150912
    30235 1m1k:U (3.2) BS02 MG ? GO:0002181 ... P10972 12150912
    30236 1m1k:V (3.2) BS01 rna ? GO:0003735 ... P14116 12150912
    30237 1m1k:W (3.2) BS01 rna ? GO:0003735 ... P10971 12150912
    30238 1m1k:X (3.2) BS01 rna ? GO:0000463 ... P14121 12150912
    30239 1m1k:X (3.2) BS02 rna ? GO:0000463 ... P14121 12150912
    30240 1m1k:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12150912
    30241 1m1k:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12150912
    30242 1m1k:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12150912
    30243 1m1n:A (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    30244 1m1n:A (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    30245 1m1n:B (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30246 1m1n:B (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    30247 1m1n:B (1.16) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30248 1m1n:C (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    30249 1m1n:C (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    30250 1m1n:D (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30251 1m1n:D (1.16) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30252 1m1n:D (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    30253 1m1n:E (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    30254 1m1n:E (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    30255 1m1n:F (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30256 1m1n:F (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    30257 1m1n:F (1.16) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30258 1m1n:G (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    30259 1m1n:G (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    30260 1m1n:H (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30261 1m1n:H (1.16) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    30262 1m1n:H (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    30263 1m1o:A (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    30264 1m1o:B (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    30265 1m1p:A (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30266 1m1p:A (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30267 1m1p:A (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30268 1m1p:A (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30269 1m1p:B (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30270 1m1p:B (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30271 1m1p:B (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30272 1m1p:B (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30273 1m1p:C (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30274 1m1p:C (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30275 1m1p:C (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30276 1m1p:C (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30277 1m1p:D (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30278 1m1p:D (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30279 1m1p:D (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30280 1m1p:D (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30281 1m1p:E (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30282 1m1p:E (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30283 1m1p:E (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30284 1m1p:E (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30285 1m1p:E (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    30286 1m1p:F (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30287 1m1p:F (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30288 1m1p:F (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30289 1m1p:F (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30290 1m1p:F (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    30291 1m1q:A (0.97) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30292 1m1q:A (0.97) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30293 1m1q:A (0.97) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30294 1m1q:A (0.97) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30295 1m1r:A (1.02) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    30296 1m1r:A (1.02) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    30297 1m1r:A (1.02) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    30298 1m1r:A (1.02) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    30299 1m1u:A (2.3) BS01 CA ? N/A P11215 11034990
    30300 1m1x:A (3.3) BS01 MN ? GO:0001525 ... P06756 11884718
    30301 1m1x:A (3.3) BS02 MN ? GO:0001525 ... P06756 11884718
    30302 1m1x:A (3.3) BS03 MN ? GO:0001525 ... P06756 11884718
    30303 1m1x:A (3.3) BS04 MN ? GO:0001525 ... P06756 11884718
    30304 1m1x:A (3.3) BS05 MN ? GO:0001525 ... P06756 11884718
    30305 1m1x:B (3.3) BS01 MN ? GO:0001618 ... P05106 11884718
    30306 1m1y:A (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30307 1m1y:A (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30308 1m1y:B (3.2) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30309 1m1y:B (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30310 1m1y:B (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30311 1m1y:C (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30312 1m1y:C (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30313 1m1y:D (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30314 1m1y:D (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30315 1m1y:D (3.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30316 1m1y:E (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30317 1m1y:F (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30318 1m1y:G (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30319 1m1y:H (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30320 1m1y:I (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30321 1m1y:I (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30322 1m1y:J (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30323 1m1y:J (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30324 1m1y:J (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30325 1m1y:K (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30326 1m1y:K (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30327 1m1y:L (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30328 1m1y:L (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30329 1m1y:L (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30330 1m1y:M (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30331 1m1y:N (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30332 1m1y:O (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30333 1m1y:P (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30334 1m20:A (1.8) BS01 HEM ? GO:0020037 ... P00171 12199707
    30335 1m21:A (1.8) BS01 peptide 3.5.1.- GO:0016787 ... Q8RJN5 12367528
    30336 1m21:B (1.8) BS01 peptide 3.5.1.- GO:0016787 ... Q8RJN5 12367528
    30337 1m26:A (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    30338 1m26:A (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    30339 1m26:A (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    30340 1m26:C (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    30341 1m26:C (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    30342 1m26:C (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    30343 1m26:E (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    30344 1m26:E (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    30345 1m26:E (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    30346 1m26:G (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    30347 1m26:G (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    30348 1m26:G (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    30349 1m27:A (2.5) BS01 peptide ? GO:0005737 ... O60880 12545174
    30350 1m2a:A (1.5) BS01 FES ? GO:0046872 ... O66511 12089152
    30351 1m2a:B (1.5) BS01 FES ? GO:0046872 ... O66511 12089152
    30352 1m2b:A (1.25) BS01 FES ? GO:0046872 ... O66511 12089152
    30353 1m2b:B (1.25) BS01 FES ? GO:0046872 ... O66511 12089152
    30354 1m2d:A (1.05) BS01 FES ? GO:0046872 ... O66511 12089152
    30355 1m2d:B (1.05) BS01 FES ? GO:0046872 ... O66511 12089152
    30356 1m2g:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    30357 1m2g:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    30358 1m2h:A (1.8) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    30359 1m2h:A (1.8) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    30360 1m2i:A (1.8) BS01 HEM ? GO:0020037 ... P00171 N/A
    30361 1m2j:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    30362 1m2j:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    30363 1m2k:A (1.47) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    30364 1m2k:A (1.47) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    30365 1m2m:A (1.8) BS01 HEM ? GO:0020037 ... P00171 N/A
    30366 1m2n:A (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    30367 1m2n:A (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    30368 1m2n:B (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    30369 1m2n:B (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    30370 1m2o:A (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    30371 1m2o:A (2.5) BS02 GNP ? GO:0000139 ... P15303 12239560
    30372 1m2o:B (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    30373 1m2o:B (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    30374 1m2o:C (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    30375 1m2o:D (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    30376 1m2o:D (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    30377 1m2p:A (2.0) BS01 HNA 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.11, Ki=0.78uM
    BindingDB: Ki=780nM
    30378 1m2q:A (1.79) BS01 MNX 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.10, Ki=0.80uM
    BindingDB: Ki=800nM
    30379 1m2r:A (1.7) BS01 MNY 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    BindingDB: Ki=350nM
    30380 1m2t:A (1.89) BS01 ADE 3.2.2.22 GO:0017148 ... P81446 12351890
    30381 1m2v:A (2.75) BS01 ZN ? GO:0000139 ... P15303 12239560
    30382 1m2v:B (2.75) BS01 ZN ? GO:0000139 ... P40482 12239560
    30383 1m2w:A (1.8) BS01 NAD 1.1.1.67 GO:0000166 ... O08355 12196534
    30384 1m2w:A (1.8) BS02 MTL 1.1.1.67 GO:0000166 ... O08355 12196534
    30385 1m2w:B (1.8) BS01 NAD 1.1.1.67 GO:0000166 ... O08355 12196534
    30386 1m2w:B (1.8) BS02 MTL 1.1.1.67 GO:0000166 ... O08355 12196534
    30387 1m2x:A (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30388 1m2x:A (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30389 1m2x:A (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30390 1m2x:A (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    30391 1m2x:B (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30392 1m2x:B (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30393 1m2x:B (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30394 1m2x:B (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    30395 1m2x:C (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30396 1m2x:C (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30397 1m2x:C (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30398 1m2x:C (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    30399 1m2x:D (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    30400 1m2x:D (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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