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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29401 1loa:G (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    29402 1loa:H (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    29403 1lob:A (2.0) BS01 CA ? GO:0005515 ... P04122 2091026
    29404 1lob:A (2.0) BS02 MN ? GO:0005515 ... P04122 2091026
    29405 1lob:A (2.0) BS03 MMA ? GO:0005515 ... P04122 2091026
    29406 1lob:B (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29407 1lob:C (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    29408 1lob:C (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    29409 1lob:C (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    29410 1lob:D (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29411 1lob:E (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    29412 1lob:E (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    29413 1lob:E (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    29414 1lob:F (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29415 1lob:G (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    29416 1lob:G (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    29417 1lob:G (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    29418 1lob:H (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29419 1loc:A (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29420 1loc:A (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29421 1loc:A (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29422 1loc:B (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29423 1loc:C (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29424 1loc:C (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29425 1loc:C (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29426 1loc:D (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29427 1loc:E (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29428 1loc:E (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29429 1loc:E (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29430 1loc:F (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29431 1loc:G (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29432 1loc:G (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29433 1loc:G (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29434 1loc:H (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29435 1lod:A (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29436 1lod:A (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29437 1lod:A (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29438 1lod:B (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29439 1lod:C (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29440 1lod:C (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29441 1lod:C (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29442 1lod:D (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29443 1lod:E (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29444 1lod:E (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29445 1lod:E (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29446 1lod:F (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29447 1lod:G (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29448 1lod:G (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29449 1lod:G (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29450 1lod:H (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29451 1loe:A (1.9) BS01 CA ? GO:0005515 ... P04122 2380988
    29452 1loe:A (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    29453 1loe:C (1.9) BS01 CA ? GO:0005515 ... P04122 2380988
    29454 1loe:C (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    29455 1lof:A (2.3) BS01 MAN ? GO:0005515 ... P04122 1730588
    29456 1lof:A (2.3) BS02 CA ? GO:0005515 ... P04122 1730588
    29457 1lof:A (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    29458 1lof:B (2.3) BS01 MAN ? GO:0005537 ... P12306 1730588
    29459 1lof:C (2.3) BS01 MAN ? GO:0005515 ... P04122 1730588
    29460 1lof:C (2.3) BS02 CA ? GO:0005515 ... P04122 1730588
    29461 1lof:C (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    29462 1lof:D (2.3) BS01 MAN ? GO:0005537 ... P12306 1730588
    29463 1log:A (2.1) BS01 MAN ? GO:0005515 ... P04122 2211692
    29464 1log:A (2.1) BS02 CA ? GO:0005515 ... P04122 2211692
    29465 1log:A (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    29466 1log:B (2.1) BS01 MAN ? GO:0005537 ... P12306 2211692
    29467 1log:C (2.1) BS01 MAN ? GO:0005515 ... P04122 2211692
    29468 1log:C (2.1) BS02 CA ? GO:0005515 ... P04122 2211692
    29469 1log:C (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    29470 1log:D (2.1) BS01 MAN ? GO:0005537 ... P12306 2211692
    29471 1loh:A (2.0) BS01 BDP 4.2.2.1 GO:0003824 ... Q54873 11991948
    29472 1loh:A (2.0) BS02 BDP 4.2.2.1 GO:0003824 ... Q54873 11991948
    29473 1loh:A (2.0) BS03 BDP 4.2.2.1 GO:0003824 ... Q54873 11991948
    29474 1loj:A (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29475 1loj:B (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29476 1loj:C (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29477 1loj:D (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29478 1loj:E (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29479 1loj:F (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29480 1loj:G (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29481 1loj:H (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29482 1loj:I (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29483 1loj:J (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29484 1loj:K (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29485 1loj:L (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29486 1loj:M (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29487 1loj:N (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29488 1lok:A (1.2) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 12176384
    29489 1lok:A (1.2) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 12176384
    29490 1lok:A (1.2) BS03 NA 3.4.11.10 GO:0006508 ... Q01693 12176384
    29491 1lok:A (1.2) BS04 SCN 3.4.11.10 GO:0006508 ... Q01693 12176384
    29492 1lol:A (1.9) BS01 BU2 4.1.1.23 GO:0004590 ... O26232 12011084
    29493 1lol:A (1.9) BS02 XMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.41uM
    PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    29494 1lol:B (1.9) BS01 BU2 4.1.1.23 GO:0004590 ... O26232 12011084
    29495 1lol:B (1.9) BS02 XMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.41uM
    PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    29496 1lom:A (1.72) BS01 CA ? GO:0030246 ... P81180 12054761
    29497 1lon:A (2.1) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    29498 1lon:A (2.1) BS02 IMO 6.3.4.4 GO:0000166 ... P28650 12004071
    29499 1lon:A (2.1) BS03 HDA 6.3.4.4 GO:0000166 ... P28650 12004071
    29500 1lon:A (2.1) BS04 GDP 6.3.4.4 GO:0000166 ... P28650 12004071
    29501 1loo:A (2.2) BS01 GTP 6.3.4.4 GO:0000166 ... P28650 12004071
    29502 1lop:A (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P23869 8601841
    29503 1loq:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    29504 1lor:A (1.6) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    29505 1los:A (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29506 1los:A (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29507 1los:B (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29508 1los:B (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29509 1los:C (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29510 1los:C (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29511 1los:D (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29512 1los:D (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29513 1lot:B (2.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 12119014
    29514 1lov:A (1.55) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    29515 1low:A (1.9) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    29516 1lox:A (2.4) BS01 FE2 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33
    GO:0001503 ... P12530 9406550
    29517 1lox:A (2.4) BS02 RS7 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33
    GO:0001503 ... P12530 9406550 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3uM
    29518 1loy:A (1.55) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    29519 1lp1:B (2.3) BS01 MG ? GO:0019865 ... P38507 12604795
    29520 1lp4:A (1.86) BS01 MG 2.7.11.1 GO:0004672 ... P28523 15740749
    29521 1lp4:A (1.86) BS02 ANP 2.7.11.1 GO:0004672 ... P28523 15740749
    29522 1lp6:A (1.9) BS01 C5P 4.1.1.23 GO:0004590 ... O26232 12011084
    29523 1lp6:B (1.9) BS01 C5P 4.1.1.23 GO:0004590 ... O26232 12011084
    29524 1lp9:A (2.0) BS01 peptide ? N/A P04439 14563323
    29525 1lp9:E (2.0) BS01 peptide ? N/A P01849 14563323
    29526 1lp9:H (2.0) BS01 peptide ? N/A P04439 14563323
    29527 1lp9:L (2.0) BS01 peptide ? N/A P01849 14563323
    29528 1lpa:B (3.04) BS01 CA 3.1.1.3 GO:0004806 ... P16233 8479519
    29529 1lpb:B (2.46) BS01 CA 3.1.1.3 GO:0004806 ... P16233 7893686
    29530 1lpb:B (2.46) BS02 MUP 3.1.1.3 GO:0004806 ... P16233 7893686
    29531 1lpc:A (1.7) BS01 CMP 3.2.2.22 GO:0006952 ... P24476 15553110
    29532 1lpd:A (1.7) BS01 ADE 3.2.2.22 GO:0006952 ... P24476 15553110
    29533 1lpf:A (2.8) BS01 FAD 1.8.1.4 GO:0004148 ... P14218 8487301
    29534 1lpf:A (2.8) BS02 FAD 1.8.1.4 GO:0004148 ... P14218 8487301
    29535 1lpf:B (2.8) BS01 FAD 1.8.1.4 GO:0004148 ... P14218 8487301
    29536 1lpg:B (2.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29537 1lpg:B (2.0) BS02 IMA 3.4.21.6 GO:0004252 ... P00742 12061878 MOAD: Ki=82nM
    PDBbind: -logKd/Ki=7.09, Ki=82nM
    BindingDB: Ki=82nM
    29538 1lph:B (2.3) BS01 peptide ? GO:0005179 ... P01308 8590022
    29539 1lph:D (2.3) BS01 peptide ? GO:0005179 ... P01308 8590022
    29540 1lpi:A (2.0) BS01 NA 3.2.1.17 GO:0003796 ... P00698 9828016
    29541 1lpk:B (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29542 1lpk:B (2.2) BS02 CBB 3.4.21.6 GO:0004252 ... P00742 12061878 MOAD: Ki=28nM
    PDBbind: -logKd/Ki=7.55, Ki=28nM
    29543 1lpm:A (2.18) BS01 MPA 3.1.1.3 N/A P20261 N/A
    29544 1lpn:A (2.18) BS01 DSC 3.1.1.3 N/A P20261 8142346
    29545 1lpn:A (2.18) BS02 DSC 3.1.1.3 N/A P20261 8142346
    29546 1lpo:A (2.18) BS01 HDS 3.1.1.3 N/A P20261 8142346
    29547 1lpp:A (2.18) BS01 HDS 3.1.1.3 N/A P20261 8142346
    29548 1lpp:A (2.18) BS02 HDS 3.1.1.3 N/A P20261 8142346
    29549 1lpq:A (3.14) BS01 dna 5.6.2.1 GO:0003677 ... P11387 12209008
    29550 1lpq:A (3.14) BS02 dna 5.6.2.1 GO:0003677 ... P11387 12209008
    29551 1lps:A (2.18) BS01 MPC 3.1.1.3 N/A P20261 N/A
    29552 1lpv:A (-1.00) BS01 ZN ? GO:0005634 ... P23023 10898790
    29553 1lpv:A (-1.00) BS02 ZN ? GO:0005634 ... P23023 10898790
    29554 1lpz:B (2.4) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29555 1lpz:B (2.4) BS02 CMB 3.4.21.6 GO:0004252 ... P00742 12061878 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    BindingDB: Ki=25nM
    29556 1lq1:A (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29557 1lq1:A (2.3) BS02 dna ? GO:0003677 ... P06534 12176382
    29558 1lq1:B (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29559 1lq1:C (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29560 1lq1:D (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29561 1lq1:D (2.3) BS02 dna ? GO:0003677 ... P06534 12176382
    29562 1lq2:A (2.7) BS01 IDD 3.2.1.21 GO:0004553 ... Q9XEI3 14597633 PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    29563 1lq8:A (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29564 1lq8:A (2.4) BS02 peptide ? GO:0004867 ... P05154 12575940
    29565 1lq8:C (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29566 1lq8:E (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29567 1lq8:E (2.4) BS02 peptide ? GO:0004867 ... P05154 12575940
    29568 1lq8:G (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29569 1lqa:A (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    29570 1lqa:B (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    29571 1lqb:C (2.0) BS01 peptide ? N/A P40337 12050673
    29572 1lqd:B (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29573 1lqd:B (2.7) BS02 CMI 3.4.21.6 GO:0004252 ... P00742 12061878 PDBbind: -logKd/Ki=8.05, Ki=9nM
    BindingDB: Ki=9nM
    29574 1lqe:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00760 12061878
    29575 1lqe:A (2.2) BS02 IMA 3.4.21.4 GO:0004252 ... P00760 12061878 MOAD: Ki=1507nM
    PDBbind: -logKd/Ki=5.82, Ki=1507nM
    29576 1lqf:A (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29577 1lqf:B (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29578 1lqf:C (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29579 1lqf:D (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29580 1lqk:A (1.35) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29581 1lqk:A (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29582 1lqk:B (1.35) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29583 1lqk:B (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29584 1lqo:A (2.0) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29585 1lqo:A (2.0) BS02 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29586 1lqo:A (2.0) BS03 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29587 1lqo:A (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29588 1lqo:B (2.0) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29589 1lqo:B (2.0) BS02 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29590 1lqo:B (2.0) BS03 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29591 1lqo:B (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29592 1lqp:A (1.19) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29593 1lqp:A (1.19) BS02 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29594 1lqp:A (1.19) BS03 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29595 1lqp:A (1.19) BS04 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29596 1lqp:B (1.19) BS01 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29597 1lqp:B (1.19) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29598 1lqp:B (1.19) BS03 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29599 1lqp:B (1.19) BS04 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29600 1lqt:A (1.05) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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