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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28601 1lbx:B (2.4) BS03 IPD 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28602 1lby:A (2.25) BS01 F6P 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28603 1lby:A (2.25) BS02 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28604 1lby:A (2.25) BS03 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28605 1lby:A (2.25) BS04 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28606 1lby:A (2.25) BS05 PO4 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28607 1lby:A (2.25) BS06 F6P 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28608 1lby:B (2.25) BS01 F6P 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28609 1lby:B (2.25) BS02 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28610 1lby:B (2.25) BS03 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28611 1lby:B (2.25) BS04 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28612 1lby:B (2.25) BS05 PO4 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28613 1lbz:A (2.2) BS01 FBP 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28614 1lbz:A (2.2) BS02 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28615 1lbz:A (2.2) BS03 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28616 1lbz:A (2.2) BS04 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28617 1lbz:A (2.2) BS05 FBP 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28618 1lbz:B (2.2) BS01 FBP 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28619 1lbz:B (2.2) BS02 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28620 1lbz:B (2.2) BS03 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28621 1lbz:B (2.2) BS04 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 11940584
    28622 1lc0:A (1.2) BS01 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28623 1lc0:A (1.2) BS02 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28624 1lc1:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    28625 1lc2:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    28626 1lc3:A (1.5) BS01 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28627 1lc3:A (1.5) BS02 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28628 1lc3:A (1.5) BS03 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28629 1lc3:A (1.5) BS04 NAD 1.3.1.24 GO:0000166 ... P46844 12079357
    28630 1lc3:A (1.5) BS05 NAD 1.3.1.24 GO:0000166 ... P46844 12079357
    28631 1lc5:A (1.46) BS01 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    28632 1lc5:A (1.46) BS02 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    28633 1lc7:A (1.8) BS01 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    28634 1lc7:A (1.8) BS02 TPO 4.1.1.81 GO:0003824 ... P97084 12119022
    28635 1lc8:A (1.8) BS01 33P 4.1.1.81 GO:0003824 ... P97084 12119022
    28636 1lca:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    28637 1lcb:A (2.5) BS01 TMP 2.1.1.45 GO:0004799 ... P00469 8371269
    28638 1lcb:A (2.5) BS02 DHF 2.1.1.45 GO:0004799 ... P00469 8371269
    28639 1lcc:A (-1.00) BS01 dna ? GO:0003677 ... P03023 8230225
    28640 1lcc:A (-1.00) BS02 dna ? GO:0003677 ... P03023 8230225
    28641 1lcd:A (-1.00) BS01 dna ? GO:0003677 ... P03023 8230225
    28642 1lcd:A (-1.00) BS02 dna ? GO:0003677 ... P03023 8230225
    28643 1lce:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    28644 1lce:A (2.5) BS02 TMF 2.1.1.45 GO:0004799 ... P00469 8371269
    28645 1lcf:A (2.0) BS01 CU 3.4.21.- GO:0001503 ... P02788 15299444
    28646 1lcf:A (2.0) BS02 CU 3.4.21.- GO:0001503 ... P02788 15299444
    28647 1lcf:A (2.0) BS03 CO3 3.4.21.- GO:0001503 ... P02788 15299444
    28648 1lcf:A (2.0) BS04 OXL 3.4.21.- GO:0001503 ... P02788 15299444
    28649 1lcj:A (1.8) BS01 peptide 2.7.10.2 N/A P06239 7680435
    28650 1lck:A (2.5) BS01 peptide 2.7.10.2 N/A P06239 7512222
    28651 1lcn:A (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    28652 1lcn:B (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    28653 1lcn:B (1.63) BS02 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    28654 1lco:A (2.9) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    28655 1lco:A (2.9) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28656 1lco:A (2.9) BS03 PPY 1.1.2.3 GO:0016491 ... P00175 7632684
    28657 1lco:B (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28658 1lco:B (2.9) BS02 PPY 1.1.2.3 GO:0016491 ... P00175 7632684
    28659 1lcp:A (1.65) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28660 1lcp:A (1.65) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28661 1lcp:A (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    28662 1lcp:B (1.65) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28663 1lcp:B (1.65) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28664 1lcp:B (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    28665 1lct:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 8371268
    28666 1lct:A (2.0) BS02 CO3 3.4.21.- GO:0005576 ... P02788 8371268
    28667 1lcu:A (3.5) BS01 CA 3.6.4.- GO:0000287 ... P68135 11932258
    28668 1lcu:A (3.5) BS02 CA 3.6.4.- GO:0000287 ... P68135 11932258
    28669 1lcu:A (3.5) BS03 ATP 3.6.4.- GO:0000287 ... P68135 11932258
    28670 1lcu:A (3.5) BS04 LAR 3.6.4.- GO:0000287 ... P68135 11932258
    28671 1lcu:B (3.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 11932258
    28672 1lcu:B (3.5) BS02 LAR 3.6.4.- GO:0000287 ... P68135 11932258
    28673 1lcv:A (2.3) BS01 SNR ? GO:0009374 ... P22629 12055191
    28674 1lcv:B (2.3) BS01 SNR ? GO:0009374 ... P22629 12055191
    28675 1lcw:A (2.2) BS01 SHM ? GO:0009374 ... P22629 12055191
    28676 1lcw:B (2.2) BS01 SHM ? GO:0009374 ... P22629 12055191
    28677 1lcz:A (1.95) BS01 BH7 ? GO:0009374 ... P22629 12055191
    28678 1lcz:B (1.95) BS01 BH7 ? GO:0009374 ... P22629 12055191
    28679 1ld3:A (2.6) BS01 ZN 4.99.1.9 GO:0004325 ... P32396 12761666
    28680 1ld7:A (2.0) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12036349
    28681 1ld7:A (2.0) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12036349 BindingDB: Kd=2.0nM
    28682 1ld7:B (2.0) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12036349
    28683 1ld7:B (2.0) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    28684 1ld7:B (2.0) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12036349
    28685 1ld7:B (2.0) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12036349
    28686 1ld7:B (2.0) BS05 U66 2.5.1.58 GO:0003824 ... P49356 12036349 MOAD: ic50=1.1nM
    PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    28687 1ld8:A (1.8) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12036349
    28688 1ld8:B (1.8) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12036349
    28689 1ld8:B (1.8) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    28690 1ld8:B (1.8) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12036349
    28691 1ld8:B (1.8) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12036349
    28692 1ld8:B (1.8) BS05 U49 2.5.1.58 GO:0003824 ... P49356 12036349 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    28693 1ld9:A (2.4) BS01 peptide ? N/A P01897 9192660
    28694 1ld9:D (2.4) BS01 peptide ? N/A P01897 9192660
    28695 1ldb:A (2.8) BS01 SO4 1.1.1.27 GO:0003824 ... P00344 2330370
    28696 1ldc:A (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28697 1ldc:A (2.9) BS02 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    28698 1ldc:A (2.9) BS03 PYR 1.1.2.3 GO:0016491 ... P00175 7632684
    28699 1ldc:B (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28700 1ldc:B (2.9) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 7632684
    28701 1lde:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28702 1lde:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28703 1lde:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28704 1lde:A (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28705 1lde:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28706 1lde:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28707 1lde:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28708 1lde:B (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28709 1lde:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28710 1lde:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28711 1lde:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28712 1lde:C (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28713 1lde:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28714 1lde:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28715 1lde:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28716 1lde:D (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28717 1ldg:A (1.74) BS01 NAI 1.1.1.27 GO:0003824 ... Q27743 8901865
    28718 1ldj:B (3.0) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28719 1ldj:B (3.0) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28720 1ldj:B (3.0) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28721 1ldk:C (3.1) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28722 1ldk:C (3.1) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28723 1ldk:C (3.1) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28724 1ldm:A (2.1) BS01 NAD 1.1.1.27 GO:0003824 ... P00341 3430615
    28725 1ldn:A (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28726 1ldn:A (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28727 1ldn:B (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28728 1ldn:B (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28729 1ldn:C (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28730 1ldn:C (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28731 1ldn:D (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28732 1ldn:D (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28733 1ldn:E (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28734 1ldn:E (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28735 1ldn:F (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28736 1ldn:F (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28737 1ldn:G (2.5) BS01 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28738 1ldn:H (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28739 1ldn:H (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28740 1ldo:A (2.2) BS01 SNR ? GO:0005576 ... P02701 12055191
    28741 1ldo:B (2.2) BS01 SNR ? GO:0005576 ... P02701 12055191
    28742 1ldp:H (3.1) BS01 peptide ? N/A P01897 9620676
    28743 1ldp:H (3.1) BS02 peptide ? N/A P01897 9620676
    28744 1ldq:A (2.7) BS01 SHM ? GO:0005576 ... P02701 12055191
    28745 1ldq:B (2.7) BS01 SHM ? GO:0005576 ... P02701 12055191
    28746 1ldt:T (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9242660
    28747 1ldy:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28748 1ldy:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28749 1ldy:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28750 1ldy:A (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28751 1ldy:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28752 1ldy:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28753 1ldy:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28754 1ldy:B (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28755 1ldy:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28756 1ldy:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28757 1ldy:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28758 1ldy:C (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28759 1ldy:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28760 1ldy:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28761 1ldy:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28762 1ldy:D (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28763 1le5:A (2.75) BS01 dna ? GO:0003677 ... Q04207 11970948
    28764 1le5:A (2.75) BS02 dna ? GO:0003677 ... Q04207 11970948
    28765 1le5:B (2.75) BS01 dna ? GO:0003677 ... P25799 11970948
    28766 1le5:B (2.75) BS02 dna ? GO:0003677 ... P25799 11970948
    28767 1le5:E (2.75) BS01 dna ? GO:0003677 ... Q04207 11970948
    28768 1le5:E (2.75) BS02 dna ? GO:0003677 ... Q04207 11970948
    28769 1le5:F (2.75) BS01 dna ? GO:0003677 ... P25799 11970948
    28770 1le5:F (2.75) BS02 dna ? GO:0003677 ... P25799 11970948
    28771 1le6:A (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28772 1le6:B (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28773 1le6:C (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28774 1le7:A (2.09) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28775 1le7:B (2.09) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28776 1le8:A (2.3) BS01 dna ? GO:0000981 ... P0CY10 12121651 PDBbind: Kd=4.51uM
    28777 1le8:A (2.3) BS02 dna ? GO:0000981 ... P0CY10 12121651 PDBbind: Kd=4.51uM
    28778 1le8:B (2.3) BS01 dna ? GO:0003677 ... P0CY08 12121651 PDBbind: Kd=4.51uM
    28779 1le8:B (2.3) BS02 dna ? GO:0003677 ... P0CY08 12121651 PDBbind: Kd=4.51uM
    28780 1le9:A (3.0) BS01 dna ? GO:0003677 ... Q04207 11970948
    28781 1le9:A (3.0) BS02 dna ? GO:0003677 ... Q04207 11970948
    28782 1le9:B (3.0) BS01 dna ? GO:0003677 ... P25799 11970948
    28783 1le9:B (3.0) BS02 dna ? GO:0003677 ... P25799 11970948
    28784 1le9:E (3.0) BS01 dna ? GO:0003677 ... Q04207 11970948
    28785 1le9:E (3.0) BS02 dna ? GO:0003677 ... Q04207 11970948
    28786 1le9:F (3.0) BS01 dna ? GO:0003677 ... P25799 11970948
    28787 1le9:F (3.0) BS02 dna ? GO:0003677 ... P25799 11970948
    28788 1lec:A (2.0) BS01 MN ? GO:0030246 ... P24146 8478943
    28789 1lec:A (2.0) BS02 CA ? GO:0030246 ... P24146 8478943
    28790 1lec:A (2.0) BS03 SO4 ? GO:0030246 ... P24146 8478943
    28791 1led:A (2.0) BS01 GAL ? GO:0030246 ... P24146 8478943
    28792 1led:A (2.0) BS02 FUC ? GO:0030246 ... P24146 8478943
    28793 1led:A (2.0) BS03 FUC ? GO:0030246 ... P24146 8478943
    28794 1led:A (2.0) BS04 FUC ? GO:0030246 ... P24146 8478943
    28795 1led:A (2.0) BS05 MN ? GO:0030246 ... P24146 8478943
    28796 1led:A (2.0) BS06 CA ? GO:0030246 ... P24146 8478943
    28797 1led:A (2.0) BS07 SO4 ? GO:0030246 ... P24146 8478943
    28798 1lee:A (1.9) BS01 R36 3.4.23.39 GO:0004190 ... P46925 12454457 PDBbind: -logKd/Ki=7.74, Ki=18nM
    28799 1leg:A (1.75) BS01 peptide ? N/A P01901 11994422
    28800 1lei:A (2.7) BS01 dna ? GO:0003677 ... Q04207 11970949 PDBbind: Kd=0.8nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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