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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27801 1kza:1 (1.74) BS02 CA ? N/A P08661 11850428
    27802 1kza:1 (1.74) BS03 CA ? N/A P08661 11850428
    27803 1kza:2 (1.74) BS01 MAN ? N/A P08661 11850428
    27804 1kza:2 (1.74) BS02 CA ? N/A P08661 11850428
    27805 1kza:2 (1.74) BS03 CA ? N/A P08661 11850428
    27806 1kzb:1 (1.8) BS01 MAN ? N/A P08661 11850428
    27807 1kzb:1 (1.8) BS02 CA ? N/A P08661 11850428
    27808 1kzb:1 (1.8) BS03 CA ? N/A P08661 11850428
    27809 1kzb:2 (1.8) BS01 MAN ? N/A P08661 11850428
    27810 1kzb:2 (1.8) BS02 CA ? N/A P08661 11850428
    27811 1kzb:2 (1.8) BS03 CA ? N/A P08661 11850428
    27812 1kzc:1 (1.85) BS01 MAN ? N/A P08661 11850428
    27813 1kzc:1 (1.85) BS02 CA ? N/A P08661 11850428
    27814 1kzc:1 (1.85) BS03 CA ? N/A P08661 11850428
    27815 1kzc:2 (1.85) BS01 MAN ? N/A P08661 11850428
    27816 1kzc:2 (1.85) BS02 CA ? N/A P08661 11850428
    27817 1kzc:2 (1.85) BS03 CA ? N/A P08661 11850428
    27818 1kzd:1 (1.9) BS01 CA ? N/A P08661 11850428
    27819 1kzd:1 (1.9) BS02 CA ? N/A P08661 11850428
    27820 1kzd:2 (1.9) BS01 CA ? N/A P08661 11850428
    27821 1kzd:2 (1.9) BS02 CA ? N/A P08661 11850428
    27822 1kze:1 (1.8) BS01 MAN ? N/A P08661 11850428
    27823 1kze:1 (1.8) BS02 CA ? N/A P08661 11850428
    27824 1kze:1 (1.8) BS03 CA ? N/A P08661 11850428
    27825 1kze:2 (1.8) BS01 MAN ? N/A P08661 11850428
    27826 1kze:2 (1.8) BS02 CA ? N/A P08661 11850428
    27827 1kze:2 (1.8) BS03 CA ? N/A P08661 11850428
    27828 1kzh:A (2.55) BS01 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27829 1kzh:A (2.55) BS02 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27830 1kzh:A (2.55) BS03 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27831 1kzh:B (2.55) BS01 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27832 1kzh:B (2.55) BS02 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27833 1kzh:B (2.55) BS03 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27834 1kzh:B (2.55) BS04 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27835 1kzh:B (2.55) BS05 SO4 2.7.1.90 GO:0003872 ... P70826 12015149
    27836 1kzi:A (1.75) BS01 CO3 2.1.1.45 GO:0000287 ... P0A884 12033935
    27837 1kzi:A (1.75) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27838 1kzi:A (1.75) BS03 THG 2.1.1.45 GO:0000287 ... P0A884 12033935
    27839 1kzi:A (1.75) BS04 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27840 1kzi:B (1.75) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27841 1kzi:B (1.75) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27842 1kzi:B (1.75) BS03 THG 2.1.1.45 GO:0000287 ... P0A884 12033935
    27843 1kzj:A (2.6) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27844 1kzj:A (2.6) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27845 1kzj:B (2.6) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27846 1kzj:B (2.6) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27847 1kzj:C (2.6) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27848 1kzj:D (2.6) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27849 1kzj:D (2.6) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27850 1kzj:E (2.6) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27851 1kzj:E (2.6) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27852 1kzj:F (2.6) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 12033935
    27853 1kzk:A (1.09) BS01 JE2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 11926820 MOAD: Ki=41pM
    PDBbind: -logKd/Ki=10.39, Ki=41pM
    27854 1kzk:B (1.09) BS01 JE2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 11926820 PDBbind: -logKd/Ki=10.39, Ki=41pM
    27855 1kzl:A (2.1) BS01 CRM 2.5.1.9 GO:0004746 ... Q9Y7P0 12377123
    27856 1kzl:A (2.1) BS02 CRM 2.5.1.9 GO:0004746 ... Q9Y7P0 12377123
    27857 1kzm:A (2.0) BS01 CA 1.11.1.7 GO:0004601 ... P00433 12351824
    27858 1kzm:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12351824
    27859 1kzm:A (2.0) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 12351824
    27860 1kzn:A (2.3) BS01 CBN 5.6.2.2 GO:0003677 ... P0AES6 12044152 MOAD: Kd=1.2nM
    PDBbind: -logKd/Ki=8.92, Kd=1.2nM
    BindingDB: IC50=73nM
    27861 1kzo:B (2.2) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 12374986
    27862 1kzo:B (2.2) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 12374986
    27863 1kzo:B (2.2) BS03 FPP 2.5.1.58 GO:0003824 ... Q02293 12374986 MOAD: Kd=5nM
    27864 1kzo:B (2.2) BS04 FAR 2.5.1.58 GO:0003824 ... Q02293 12374986
    27865 1kzp:B (2.1) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 12374986
    27866 1kzp:B (2.1) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 12374986
    27867 1kzp:B (2.1) BS03 FAR 2.5.1.58 GO:0003824 ... Q02293 12374986
    27868 1kzu:A (2.5) BS01 BCL ? GO:0005886 ... P26789 9159480
    27869 1kzu:A (2.5) BS02 BCL ? GO:0005886 ... P26789 9159480
    27870 1kzu:A (2.5) BS03 BCL ? GO:0005886 ... P26789 9159480
    27871 1kzu:B (2.5) BS01 BCL ? GO:0005886 ... P26790 9159480
    27872 1kzu:B (2.5) BS02 BCL ? GO:0005886 ... P26790 9159480
    27873 1kzu:B (2.5) BS03 BCL ? GO:0005886 ... P26790 9159480
    27874 1kzu:D (2.5) BS01 BCL ? GO:0005886 ... P26789 9159480
    27875 1kzu:D (2.5) BS02 BCL ? GO:0005886 ... P26789 9159480
    27876 1kzu:D (2.5) BS03 BCL ? GO:0005886 ... P26789 9159480
    27877 1kzu:D (2.5) BS04 BCL ? GO:0005886 ... P26789 9159480
    27878 1kzu:E (2.5) BS01 BCL ? GO:0005886 ... P26790 9159480
    27879 1kzu:E (2.5) BS02 BCL ? GO:0005886 ... P26790 9159480
    27880 1kzu:E (2.5) BS03 BCL ? GO:0005886 ... P26790 9159480
    27881 1kzu:G (2.5) BS01 BCL ? GO:0005886 ... P26789 9159480
    27882 1kzu:G (2.5) BS02 BCL ? GO:0005886 ... P26789 9159480
    27883 1kzu:G (2.5) BS03 BCL ? GO:0005886 ... P26789 9159480
    27884 1kzu:G (2.5) BS04 BCL ? GO:0005886 ... P26789 9159480
    27885 1kzu:H (2.5) BS01 BCL ? GO:0005886 ... P26790 9159480
    27886 1kzu:H (2.5) BS02 BCL ? GO:0005886 ... P26790 9159480
    27887 1kzu:H (2.5) BS03 BCL ? GO:0005886 ... P26790 9159480
    27888 1kzy:A (2.5) BS01 ZN ? GO:0000976 ... P04637 11877378
    27889 1kzy:B (2.5) BS01 ZN ? GO:0000976 ... P04637 11877378
    27890 1kzz:A (3.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 12005438
    27891 1l0a:A (2.9) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 12005438
    27892 1l0c:A (2.3) BS01 COT 2.3.1.87 GO:0004059 ... Q29495 11884405
    27893 1l0g:A (1.5) BS01 GLC 3.5.2.6 GO:0008800 ... P00811 12144785
    27894 1l0g:A (1.5) BS02 FRU 3.5.2.6 GO:0008800 ... P00811 12144785
    27895 1l0i:A (1.2) BS01 ZN ? GO:0000035 ... P0A6A8 12057197
    27896 1l0i:A (1.2) BS02 PSR ? GO:0000035 ... P0A6A8 12057197
    27897 1l0l:C (2.35) BS01 HEM ? GO:0005739 ... P00157 12269811
    27898 1l0l:C (2.35) BS02 HEM ? GO:0005739 ... P00157 12269811
    27899 1l0l:C (2.35) BS03 FMX ? GO:0005739 ... P00157 12269811
    27900 1l0l:D (2.35) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12269811
    27901 1l0l:E (2.35) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12269811
    27902 1l0n:C (2.6) BS01 HEM ? GO:0005739 ... P00157 12269811
    27903 1l0n:C (2.6) BS02 HEM ? GO:0005739 ... P00157 12269811
    27904 1l0n:D (2.6) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12269811
    27905 1l0n:E (2.6) BS01 FES 7.1.1.8 GO:0008121 ... P13272 12269811
    27906 1l0o:A (2.9) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 11955433
    27907 1l0o:B (2.9) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 11955433
    27908 1l0p:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P29957 12021442
    27909 1l0p:A (2.1) BS02 NO3 3.2.1.1 GO:0003824 ... P29957 12021442
    27910 1l0v:A (3.3) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    27911 1l0v:A (3.3) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    27912 1l0v:B (3.3) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27913 1l0v:B (3.3) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27914 1l0v:B (3.3) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27915 1l0v:B (3.3) BS04 MQ7 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27916 1l0v:C (3.3) BS01 MQ7 ? GO:0000104 ... P0A8Q0 11850430
    27917 1l0v:C (3.3) BS02 MQ7 ? GO:0000104 ... P0A8Q0 11850430
    27918 1l0v:D (3.3) BS01 MQ7 ? GO:0000104 ... P0A8Q3 11850430
    27919 1l0v:D (3.3) BS02 MQ7 ? GO:0000104 ... P0A8Q3 11850430
    27920 1l0v:M (3.3) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    27921 1l0v:M (3.3) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    27922 1l0v:N (3.3) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27923 1l0v:N (3.3) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27924 1l0v:N (3.3) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27925 1l0v:N (3.3) BS04 MQ7 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27926 1l0v:O (3.3) BS01 MQ7 ? GO:0000104 ... P0A8Q0 11850430
    27927 1l0v:P (3.3) BS01 MQ7 ? GO:0000104 ... P0A8Q3 11850430
    27928 1l0v:P (3.3) BS02 MQ7 ? GO:0000104 ... P0A8Q3 11850430
    27929 1l0y:A (2.5) BS01 ZN ? N/A P01851 12015151
    27930 1l0y:B (2.5) BS01 ZN ? GO:0005576 ... P0DJY7 12015151
    27931 1l0y:C (2.5) BS01 ZN ? N/A P01851 12015151
    27932 1l0y:D (2.5) BS01 ZN ? GO:0005576 ... P0DJY7 12015151
    27933 1l0z:A (1.5) BS01 XE 3.4.21.36 GO:0004252 ... P00772 12198297
    27934 1l1c:A (-1.00) BS01 rna ? GO:0003723 ... P39805 11953318 PDBbind: Kd=10nM
    27935 1l1c:B (-1.00) BS01 rna ? GO:0003723 ... P39805 11953318 PDBbind: Kd=10nM
    27936 1l1e:A (2.0) BS01 CO3 2.1.1.79 GO:0005737 ... P9WPB3 11756461
    27937 1l1e:A (2.0) BS02 SAH 2.1.1.79 GO:0005737 ... P9WPB3 11756461
    27938 1l1e:B (2.0) BS01 CO3 2.1.1.79 GO:0005737 ... P9WPB3 11756461
    27939 1l1e:B (2.0) BS02 SAH 2.1.1.79 GO:0005737 ... P9WPB3 11756461
    27940 1l1g:A (1.5) BS01 BR 3.4.21.36 GO:0004252 ... P00772 12198297
    27941 1l1g:A (1.5) BS02 XE 3.4.21.36 GO:0004252 ... P00772 12198297
    27942 1l1g:A (1.5) BS03 GOL 3.4.21.36 GO:0004252 ... P00772 12198297
    27943 1l1m:A (-1.00) BS01 dna ? GO:0003677 ... P03023 12065400
    27944 1l1m:A (-1.00) BS02 dna ? GO:0003677 ... P03023 12065400
    27945 1l1m:B (-1.00) BS01 dna ? GO:0003677 ... P03023 12065400
    27946 1l1m:B (-1.00) BS02 dna ? GO:0003677 ... P03023 12065400
    27947 1l1o:C (2.8) BS01 ZN ? GO:0003677 ... P27694 11927569
    27948 1l1o:F (2.8) BS01 ZN ? GO:0003677 ... P27694 11927569
    27949 1l1q:A (1.85) BS01 SO4 2.4.2.7 GO:0003999 ... Q967M2 12171925
    27950 1l1q:A (1.85) BS02 SO4 2.4.2.7 GO:0003999 ... Q967M2 12171925
    27951 1l1q:A (1.85) BS03 SO4 2.4.2.7 GO:0003999 ... Q967M2 12171925
    27952 1l1q:A (1.85) BS04 9DA 2.4.2.7 GO:0003999 ... Q967M2 12171925
    27953 1l1r:A (1.95) BS01 9DA 2.4.2.7 GO:0003999 ... Q967M2 12171925
    27954 1l1r:A (1.95) BS02 PRP 2.4.2.7 GO:0003999 ... Q967M2 12171925
    27955 1l1t:A (1.8) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 12055620
    27956 1l1t:A (1.8) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 12055620
    27957 1l1t:A (1.8) BS03 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 12055620
    27958 1l1y:A (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27959 1l1y:A (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27960 1l1y:B (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27961 1l1y:B (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27962 1l1y:C (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27963 1l1y:C (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27964 1l1y:D (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27965 1l1y:D (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27966 1l1y:E (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27967 1l1y:E (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27968 1l1y:F (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27969 1l1y:F (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27970 1l1z:A (1.7) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 12055620
    27971 1l1z:A (1.7) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 12055620
    27972 1l1z:A (1.7) BS03 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P84131 12055620
    27973 1l2a:A (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27974 1l2a:A (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27975 1l2a:A (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27976 1l2a:A (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27977 1l2a:A (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27978 1l2a:A (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27979 1l2a:A (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27980 1l2a:A (2.5) BS08 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27981 1l2a:B (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27982 1l2a:B (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27983 1l2a:B (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27984 1l2a:B (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27985 1l2a:B (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27986 1l2a:B (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27987 1l2a:B (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27988 1l2a:C (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27989 1l2a:C (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27990 1l2a:C (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27991 1l2a:C (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27992 1l2a:C (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27993 1l2a:C (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27994 1l2a:C (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27995 1l2a:C (2.5) BS08 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27996 1l2a:D (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27997 1l2a:D (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27998 1l2a:D (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    27999 1l2a:D (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    28000 1l2a:D (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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