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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27601 1kx3:H (2.0) BS02 dna ? GO:0000786 ... P02281 12079350
    27602 1kx4:A (2.6) BS01 dna ? GO:0000786 ... P84233 12079350
    27603 1kx4:A (2.6) BS02 dna ? GO:0000786 ... P84233 12079350
    27604 1kx4:B (2.6) BS01 dna ? GO:0000786 ... P62799 12079350
    27605 1kx4:B (2.6) BS02 dna ? GO:0000786 ... P62799 12079350
    27606 1kx4:C (2.6) BS01 dna ? GO:0000786 ... P06897 12079350
    27607 1kx4:C (2.6) BS02 dna ? GO:0000786 ... P06897 12079350
    27608 1kx4:D (2.6) BS01 dna ? GO:0000786 ... P02281 12079350
    27609 1kx4:D (2.6) BS02 dna ? GO:0000786 ... P02281 12079350
    27610 1kx4:E (2.6) BS01 dna ? GO:0000786 ... P84233 12079350
    27611 1kx4:E (2.6) BS02 dna ? GO:0000786 ... P84233 12079350
    27612 1kx4:F (2.6) BS01 dna ? GO:0000786 ... P62799 12079350
    27613 1kx4:F (2.6) BS02 dna ? GO:0000786 ... P62799 12079350
    27614 1kx4:G (2.6) BS01 dna ? GO:0000786 ... P06897 12079350
    27615 1kx4:G (2.6) BS02 dna ? GO:0000786 ... P06897 12079350
    27616 1kx4:H (2.6) BS01 dna ? GO:0000786 ... P02281 12079350
    27617 1kx4:H (2.6) BS02 dna ? GO:0000786 ... P02281 12079350
    27618 1kx5:A (1.94) BS01 dna ? GO:0000786 ... P84233 12079350
    27619 1kx5:A (1.94) BS02 dna ? GO:0000786 ... P84233 12079350
    27620 1kx5:B (1.94) BS01 dna ? GO:0000786 ... P62799 12079350
    27621 1kx5:B (1.94) BS02 dna ? GO:0000786 ... P62799 12079350
    27622 1kx5:C (1.94) BS01 dna ? GO:0000786 ... P06897 12079350
    27623 1kx5:C (1.94) BS02 dna ? GO:0000786 ... P06897 12079350
    27624 1kx5:D (1.94) BS01 dna ? GO:0000786 ... P02281 12079350
    27625 1kx5:D (1.94) BS02 dna ? GO:0000786 ... P02281 12079350
    27626 1kx5:E (1.94) BS01 dna ? GO:0000786 ... P84233 12079350
    27627 1kx5:E (1.94) BS02 dna ? GO:0000786 ... P84233 12079350
    27628 1kx5:F (1.94) BS01 dna ? GO:0000786 ... P62799 12079350
    27629 1kx5:F (1.94) BS02 dna ? GO:0000786 ... P62799 12079350
    27630 1kx5:G (1.94) BS01 dna ? GO:0000786 ... P06897 12079350
    27631 1kx5:G (1.94) BS02 dna ? GO:0000786 ... P06897 12079350
    27632 1kx5:H (1.94) BS01 dna ? GO:0000786 ... P02281 12079350
    27633 1kx5:H (1.94) BS02 dna ? GO:0000786 ... P02281 12079350
    27634 1kx7:A (-1.00) BS01 HEC ? GO:0005506 ... O52685 11955059
    27635 1kxg:A (2.0) BS01 MG ? GO:0005164 ... Q9Y275 11862220
    27636 1kxg:F (2.0) BS01 MG ? GO:0005164 ... Q9Y275 11862220
    27637 1kxh:A (2.3) BS01 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    27638 1kxh:A (2.3) BS02 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    27639 1kxh:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P29957 11914073
    27640 1kxh:A (2.3) BS04 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    27641 1kxm:A (1.74) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11967381
    27642 1kxm:A (1.74) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 11967381 MOAD: Kd=0.14mM
    27643 1kxn:A (1.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11967381
    27644 1kxp:A (2.1) BS01 ATP 3.6.4.- GO:0000287 ... P68135 12048248
    27645 1kxq:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27646 1kxq:B (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27647 1kxq:C (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27648 1kxq:D (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27649 1kxr:A (2.07) BS01 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27650 1kxr:A (2.07) BS02 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27651 1kxr:B (2.07) BS01 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27652 1kxr:B (2.07) BS02 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27653 1kxt:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27654 1kxt:C (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27655 1kxt:E (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27656 1ky2:A (1.6) BS01 MG ? GO:0003924 ... P32939 11937061
    27657 1ky2:A (1.6) BS02 GNP ? GO:0003924 ... P32939 11937061
    27658 1ky3:A (1.35) BS01 GDP ? GO:0003924 ... P32939 11937061
    27659 1ky4:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27660 1ky4:A (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27661 1ky4:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27662 1ky4:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27663 1ky4:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27664 1ky4:C (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27665 1ky4:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27666 1ky4:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27667 1ky5:A (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27668 1ky5:A (2.8) BS02 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27669 1ky5:A (2.8) BS03 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27670 1ky5:B (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27671 1ky5:B (2.8) BS02 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27672 1ky5:B (2.8) BS03 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27673 1ky5:C (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27674 1ky5:C (2.8) BS02 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27675 1ky5:C (2.8) BS03 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27676 1ky5:D (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27677 1ky5:D (2.8) BS02 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27678 1ky5:D (2.8) BS03 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27679 1ky6:A (2.0) BS01 peptide ? GO:0006886 ... P17427 12057195
    27680 1ky7:A (2.15) BS01 peptide ? GO:0006886 ... P17427 12057195
    27681 1ky8:A (2.4) BS01 NAP 1.2.1.90 GO:0000166 ... O57693 11842090 MOAD: Kd=1uM
    27682 1kya:A (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27683 1kya:A (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27684 1kya:A (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27685 1kya:A (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27686 1kya:A (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27687 1kya:B (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27688 1kya:B (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27689 1kya:B (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27690 1kya:B (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27691 1kya:B (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27692 1kya:C (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27693 1kya:C (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27694 1kya:C (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27695 1kya:C (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27696 1kya:C (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27697 1kya:D (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27698 1kya:D (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27699 1kya:D (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27700 1kya:D (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27701 1kya:D (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27702 1kyd:A (2.0) BS01 peptide ? GO:0006886 ... P17427 12057195
    27703 1kyf:A (1.22) BS01 peptide ? GO:0006886 ... P17427 12057195
    27704 1kyi:A (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27705 1kyi:B (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27706 1kyi:C (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27707 1kyi:D (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27708 1kyi:E (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27709 1kyi:F (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27710 1kyi:G (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27711 1kyi:H (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27712 1kyi:I (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27713 1kyi:J (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27714 1kyi:K (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27715 1kyi:L (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27716 1kyi:M (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27717 1kyi:N (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27718 1kyi:O (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27719 1kyi:P (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27720 1kyi:Q (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27721 1kyi:R (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27722 1kyi:S (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27723 1kyi:T (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27724 1kyi:U (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27725 1kyi:V (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27726 1kyi:W (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27727 1kyi:X (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27728 1kyn:A (3.5) BS01 KTP 3.4.21.20 GO:0002003 ... P08311 11942800 PDBbind: -logKd/Ki=5.39, IC50=4.1uM
    BindingDB: IC50=4100nM
    27729 1kyn:B (3.5) BS01 KTP 3.4.21.20 GO:0002003 ... P08311 11942800 BindingDB: IC50=4100nM
    27730 1kyo:C (2.97) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27731 1kyo:C (2.97) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27732 1kyo:C (2.97) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11880631
    27733 1kyo:D (2.97) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 11880631
    27734 1kyo:E (2.97) BS01 FES 7.1.1.8 GO:0008121 ... P08067 11880631
    27735 1kyo:E (2.97) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 11880631
    27736 1kyo:N (2.97) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27737 1kyo:N (2.97) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27738 1kyo:N (2.97) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11880631
    27739 1kyo:O (2.97) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 11880631
    27740 1kyo:P (2.97) BS01 FES 7.1.1.8 GO:0008121 ... P08067 11880631
    27741 1kyo:W (2.97) BS01 HEC ? GO:0005515 ... P00044 11880631
    27742 1kyq:A (2.2) BS01 NAD 1.3.1.76
    4.99.1.4
    GO:0000103 ... P15807 11980703
    27743 1kyq:B (2.2) BS01 NAD 1.3.1.76
    4.99.1.4
    GO:0000103 ... P15807 11980703
    27744 1kyq:C (2.2) BS01 NAD 1.3.1.76
    4.99.1.4
    GO:0000103 ... P15807 11980703
    27745 1kyr:A (1.5) BS01 CU ? GO:0003674 ... P42212 11929238
    27746 1kys:A (1.44) BS01 ZN ? GO:0003674 ... P42212 11929238
    27747 1kyt:A (1.7) BS01 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27748 1kyt:A (1.7) BS02 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27749 1kyt:A (1.7) BS03 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27750 1kyt:B (1.7) BS01 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27751 1kyt:B (1.7) BS02 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27752 1kyu:A (1.8) BS01 peptide ? GO:0006886 ... P17427 12057195
    27753 1kyv:A (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27754 1kyv:A (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27755 1kyv:B (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27756 1kyv:B (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27757 1kyv:C (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27758 1kyv:C (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27759 1kyv:D (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27760 1kyv:D (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27761 1kyv:E (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27762 1kyv:E (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27763 1kyw:C (2.4) BS01 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27764 1kyw:F (2.4) BS01 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27765 1kyw:F (2.4) BS02 HFL 2.1.1.68 GO:0008168 ... P28002 12084826
    27766 1kyx:A (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27767 1kyx:A (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27768 1kyx:B (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27769 1kyx:B (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27770 1kyx:C (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27771 1kyx:C (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27772 1kyx:D (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27773 1kyx:D (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27774 1kyx:E (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27775 1kyx:E (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27776 1kyy:A (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27777 1kyy:A (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27778 1kyy:B (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27779 1kyy:B (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27780 1kyy:C (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27781 1kyy:C (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27782 1kyy:D (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27783 1kyy:D (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27784 1kyy:E (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27785 1kyy:E (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27786 1kyz:A (2.2) BS01 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    27787 1kyz:A (2.2) BS02 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27788 1kyz:C (2.2) BS01 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    27789 1kyz:C (2.2) BS02 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27790 1kyz:E (2.2) BS01 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27791 1kyz:E (2.2) BS02 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    27792 1kz8:A (2.0) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12190310
    27793 1kz8:A (2.0) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12190310
    27794 1kz8:A (2.0) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 12190310 BindingDB: IC50=1300nM
    27795 1kz8:A (2.0) BS04 PFE 3.1.3.11 GO:0005737 ... P00636 12190310 MOAD: ic50=0.83uM
    PDBbind: -logKd/Ki=6.08, IC50=0.83uM
    27796 1kz8:F (2.0) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12190310
    27797 1kz8:F (2.0) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12190310
    27798 1kz8:F (2.0) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 12190310 BindingDB: IC50=1300nM
    27799 1kz8:F (2.0) BS04 PFE 3.1.3.11 GO:0005737 ... P00636 12190310 MOAD: ic50=0.83uM
    PDBbind: -logKd/Ki=6.08, IC50=0.83uM
    27800 1kza:1 (1.74) BS01 MAN ? N/A P08661 11850428

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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