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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26201 1kfc:B (1.5) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    26202 1kfd:A (3.9) BS01 CTP 2.7.7.7 GO:0003676 ... P00582 8260491
    26203 1kfe:B (1.75) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    26204 1kfg:A (1.9) BS01 GS1 3.2.1.4 GO:0004553 ... P37700 12837787
    26205 1kfg:A (1.9) BS02 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    26206 1kfg:A (1.9) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    26207 1kfg:A (1.9) BS04 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    26208 1kfg:A (1.9) BS05 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    26209 1kfg:A (1.9) BS06 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    26210 1kfg:B (1.9) BS01 GS1 3.2.1.4 GO:0004553 ... P37700 12837787
    26211 1kfg:B (1.9) BS02 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    26212 1kfg:B (1.9) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    26213 1kfg:B (1.9) BS04 SGC 3.2.1.4 GO:0004553 ... P37700 12837787
    26214 1kfg:B (1.9) BS05 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    26215 1kfg:B (1.9) BS06 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    26216 1kfi:A (2.4) BS01 ZN 5.4.2.2 GO:0000287 ... P47244 11779235
    26217 1kfi:A (2.4) BS02 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    26218 1kfi:A (2.4) BS03 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    26219 1kfi:B (2.4) BS01 ZN 5.4.2.2 GO:0000287 ... P47244 11779235
    26220 1kfi:B (2.4) BS02 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    26221 1kfi:B (2.4) BS03 SO4 5.4.2.2 GO:0000287 ... P47244 11779235
    26222 1kfj:B (1.8) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    26223 1kfk:B (2.4) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    26224 1kfl:A (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26225 1kfl:A (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26226 1kfl:A (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26227 1kfl:B (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26228 1kfl:B (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26229 1kfl:B (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26230 1kfl:C (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26231 1kfl:C (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26232 1kfl:C (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26233 1kfl:D (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26234 1kfl:D (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26235 1kfl:D (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26236 1kfl:E (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26237 1kfl:E (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26238 1kfl:E (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26239 1kfl:E (2.8) BS04 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26240 1kfl:F (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26241 1kfl:F (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26242 1kfl:F (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26243 1kfl:G (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26244 1kfl:G (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26245 1kfl:G (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26246 1kfl:H (2.8) BS01 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26247 1kfl:H (2.8) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26248 1kfl:H (2.8) BS03 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26249 1kfl:H (2.8) BS04 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26250 1kfq:A (2.4) BS01 CA 5.4.2.2 GO:0000287 ... P47244 11779235
    26251 1kfq:B (2.4) BS01 CA 5.4.2.2 GO:0000287 ... P47244 11779235
    26252 1kfr:A (1.85) BS01 HEM ? GO:0005344 ... P80721 11914507
    26253 1kfs:A (2.1) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    26254 1kfs:A (2.1) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26255 1kfs:A (2.1) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26256 1kfv:A (2.55) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26257 1kfv:A (2.55) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26258 1kfv:A (2.55) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    26259 1kfv:B (2.55) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26260 1kfv:B (2.55) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26261 1kfv:B (2.55) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    26262 1kfy:A (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    26263 1kfy:A (3.6) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    26264 1kfy:B (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26265 1kfy:B (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26266 1kfy:B (3.6) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26267 1kfy:B (3.6) BS04 BRS 1.3.5.1 GO:0005515 ... P0AC47 11850430 PDBbind: -logKd/Ki=5.28, Ki=5.2uM
    26268 1kfy:C (3.6) BS01 BRS ? GO:0000104 ... P0A8Q0 11850430 PDBbind: -logKd/Ki=5.28, Ki=5.2uM
    26269 1kfy:D (3.6) BS01 BRS ? GO:0000104 ... P0A8Q3 11850430 PDBbind: -logKd/Ki=5.28, Ki=5.2uM
    26270 1kfy:M (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    26271 1kfy:M (3.6) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    26272 1kfy:N (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26273 1kfy:N (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26274 1kfy:N (3.6) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26275 1kfy:N (3.6) BS04 BRS 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26276 1kfy:O (3.6) BS01 BRS ? GO:0000104 ... P0A8Q0 11850430
    26277 1kfy:P (3.6) BS01 BRS ? GO:0000104 ... P0A8Q3 11850430
    26278 1kg0:A (2.65) BS01 peptide ? GO:0006955 ... P01903 11864610
    26279 1kg0:B (2.65) BS01 peptide ? GO:0006955 ... P01911 11864610
    26280 1kg2:A (1.2) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26281 1kg3:A (1.55) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26282 1kg4:A (1.6) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26283 1kg5:A (1.35) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26284 1kg6:A (1.5) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26285 1kg7:A (1.5) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26286 1kg8:A (2.0) BS01 RET ? GO:0005216 ... P02945 11721006
    26287 1kg9:A (1.81) BS01 RET ? GO:0005216 ... P02945 11721006
    26288 1kgb:A (1.65) BS01 RET ? GO:0005216 ... P02945 11721006
    26289 1kgg:A (2.3) BS01 SO4 3.5.2.6 GO:0008800 ... P00807 10436083
    26290 1kgi:A (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26291 1kgi:B (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26292 1kgi:C (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26293 1kgi:D (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26294 1kgj:A (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26295 1kgj:B (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26296 1kgj:C (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26297 1kgj:D (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26298 1kgl:A (-1.00) BS01 RTL ? GO:0002138 ... P02696 11934897
    26299 1kgn:A (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26300 1kgn:A (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26301 1kgn:B (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26302 1kgn:B (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26303 1kgn:C (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26304 1kgn:C (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26305 1kgn:D (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26306 1kgn:D (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26307 1kgo:A (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26308 1kgo:A (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26309 1kgo:B (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26310 1kgo:B (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26311 1kgo:C (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26312 1kgo:C (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26313 1kgo:D (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26314 1kgo:D (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26315 1kgp:A (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26316 1kgp:A (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26317 1kgp:B (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26318 1kgp:B (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26319 1kgp:C (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26320 1kgp:C (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26321 1kgp:C (2.0) BS03 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26322 1kgp:D (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26323 1kgp:D (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26324 1kgq:A (2.0) BS01 NPI 2.3.1.117 GO:0005737 ... P56220 11910040
    26325 1kgq:A (2.0) BS02 SCO 2.3.1.117 GO:0005737 ... P56220 11910040
    26326 1kgt:A (2.3) BS01 PML 2.3.1.117 GO:0005737 ... P56220 11910040
    26327 1kgt:A (2.3) BS02 SCA 2.3.1.117 GO:0005737 ... P56220 11910040
    26328 1kgu:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    26329 1kgw:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    26330 1kgx:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    26331 1kgz:A (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26332 1kgz:A (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26333 1kgz:A (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26334 1kgz:B (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26335 1kgz:B (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26336 1kgz:B (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26337 1kh2:A (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26338 1kh2:B (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26339 1kh2:C (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26340 1kh2:D (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26341 1kh3:A (2.15) BS01 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26342 1kh3:A (2.15) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26343 1kh3:A (2.15) BS03 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26344 1kh3:B (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26345 1kh3:B (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26346 1kh3:B (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26347 1kh3:C (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26348 1kh3:C (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26349 1kh3:C (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26350 1kh3:D (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26351 1kh3:D (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26352 1kh3:D (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26353 1kh4:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26354 1kh4:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26355 1kh4:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26356 1kh4:A (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26357 1kh4:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26358 1kh4:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26359 1kh4:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26360 1kh4:B (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26361 1kh5:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26362 1kh5:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26363 1kh5:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26364 1kh5:A (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26365 1kh5:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26366 1kh5:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26367 1kh5:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26368 1kh5:B (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26369 1kh7:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26370 1kh7:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26371 1kh7:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26372 1kh7:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26373 1kh7:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26374 1kh7:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26375 1kh8:A (2.0) BS01 CS 4.6.1.18 GO:0003676 ... P61823 16199662
    26376 1kh9:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26377 1kh9:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26378 1kh9:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26379 1kh9:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26380 1kh9:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26381 1kh9:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26382 1kh9:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26383 1khb:A (1.854) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    26384 1khe:A (2.4) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    26385 1khf:A (2.02) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    26386 1khf:A (2.02) BS02 PEP 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    26387 1khg:A (2.34) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    26388 1khh:A (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    26389 1khh:B (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    26390 1khj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26391 1khj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26392 1khj:A (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26393 1khj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26394 1khj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26395 1khj:B (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26396 1khk:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26397 1khk:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26398 1khk:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26399 1khk:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26400 1khk:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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