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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25601 1k9i:E (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25602 1k9i:E (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25603 1k9i:F (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25604 1k9i:F (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25605 1k9i:F (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25606 1k9i:G (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25607 1k9i:G (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25608 1k9i:G (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25609 1k9i:H (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25610 1k9i:H (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25611 1k9i:H (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25612 1k9i:H (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25613 1k9i:H (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25614 1k9i:I (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25615 1k9i:I (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25616 1k9i:I (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25617 1k9i:J (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25618 1k9i:J (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25619 1k9i:J (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25620 1k9j:A (1.9) BS01 MAN ? N/A Q9H2X3 11739956
    25621 1k9j:A (1.9) BS02 MAN ? N/A Q9H2X3 11739956
    25622 1k9j:A (1.9) BS03 CA ? N/A Q9H2X3 11739956
    25623 1k9j:A (1.9) BS04 CA ? N/A Q9H2X3 11739956
    25624 1k9j:A (1.9) BS05 CA ? N/A Q9H2X3 11739956
    25625 1k9k:A (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    25626 1k9k:A (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    25627 1k9k:B (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    25628 1k9k:B (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    25629 1k9m:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    25630 1k9m:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    25631 1k9m:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    25632 1k9m:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    25633 1k9m:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    25634 1k9m:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    25635 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    25636 1k9m:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    25637 1k9m:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    25638 1k9m:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    25639 1k9m:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    25640 1k9m:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    25641 1k9m:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    25642 1k9m:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    25643 1k9m:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    25644 1k9m:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    25645 1k9m:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    25646 1k9m:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    25647 1k9m:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    25648 1k9m:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    25649 1k9m:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    25650 1k9m:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    25651 1k9m:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    25652 1k9m:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    25653 1k9m:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    25654 1k9m:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    25655 1k9m:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    25656 1k9m:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    25657 1k9m:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    25658 1k9m:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    25659 1k9m:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    25660 1k9m:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    25661 1k9m:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    25662 1k9m:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    25663 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    25664 1k9q:A (-1.00) BS01 peptide ? N/A P46937 11743730
    25665 1k9r:A (-1.00) BS01 peptide ? N/A P46937 11743730
    25666 1k9s:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25667 1k9s:A (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    25668 1k9s:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25669 1k9s:B (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25670 1k9s:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25671 1k9s:C (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25672 1k9s:D (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    25673 1k9s:D (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25674 1k9s:D (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25675 1k9s:E (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25676 1k9s:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25677 1k9s:E (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25678 1k9s:F (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25679 1k9s:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25680 1k9s:F (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25681 1k9u:A (1.75) BS01 CA ? GO:0005509 ... O82040 12356717
    25682 1k9u:A (1.75) BS02 CA ? GO:0005509 ... O82040 12356717
    25683 1k9u:B (1.75) BS01 CA ? GO:0005509 ... O82040 12356717
    25684 1k9u:B (1.75) BS02 CA ? GO:0005509 ... O82040 12356717
    25685 1k9y:A (1.9) BS01 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    25686 1k9y:A (1.9) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    25687 1k9y:A (1.9) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 12126627
    25688 1k9z:A (1.5) BS01 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25689 1k9z:A (1.5) BS02 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25690 1k9z:A (1.5) BS03 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25691 1k9z:A (1.5) BS04 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25692 1k9z:A (1.5) BS05 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25693 1k9z:A (1.5) BS06 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25694 1ka0:A (1.8) BS01 AMP 3.1.3.7 GO:0000103 ... P32179 N/A
    25695 1ka1:A (1.3) BS01 CA 3.1.3.7 GO:0000103 ... P32179 12126627
    25696 1ka1:A (1.3) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    25697 1ka1:A (1.3) BS03 A3P 3.1.3.7 GO:0000103 ... P32179 12126627
    25698 1ka2:A (2.2) BS01 MG 3.4.17.19 GO:0004180 ... Q8U3L0 11839307
    25699 1ka6:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    25700 1ka7:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    25701 1kae:A (1.7) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25702 1kae:A (1.7) BS02 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    25703 1kae:A (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    25704 1kae:B (1.7) BS01 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    25705 1kae:B (1.7) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25706 1kae:B (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    25707 1kah:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25708 1kah:A (2.1) BS02 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    25709 1kah:A (2.1) BS03 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    25710 1kah:B (2.1) BS01 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    25711 1kah:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25712 1kak:A (2.5) BS01 FNP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: ic50=26uM
    PDBbind: -logKd/Ki=4.59, IC50=26uM
    25713 1kao:A (1.7) BS01 GDP 3.6.5.2 GO:0000287 ... P10114 9312017
    25714 1kap:P (1.64) BS01 peptide 3.4.24.40 GO:0001869 ... Q03023 8253063
    25715 1kap:P (1.64) BS02 ZN 3.4.24.40 GO:0001869 ... Q03023 8253063
    25716 1kap:P (1.64) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25717 1kap:P (1.64) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25718 1kap:P (1.64) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25719 1kap:P (1.64) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25720 1kap:P (1.64) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25721 1kap:P (1.64) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25722 1kap:P (1.64) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25723 1kap:P (1.64) BS10 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25724 1kaq:A (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25725 1kaq:B (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25726 1kaq:C (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25727 1kaq:D (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25728 1kaq:E (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25729 1kaq:F (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25730 1kar:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25731 1kar:A (2.1) BS02 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    25732 1kar:B (2.1) BS01 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    25733 1kar:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25734 1kar:B (2.1) BS03 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    25735 1kat:V (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    25736 1kat:V (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    25737 1kat:W (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    25738 1kat:W (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    25739 1kav:A (2.35) BS01 FEP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: Ki=1.5uM
    PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    25740 1kax:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    25741 1kay:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    25742 1kaz:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    25743 1kb0:A (1.44) BS01 CA 1.1.9.1 GO:0005509 ... Q46444 11714714
    25744 1kb0:A (1.44) BS02 HEC 1.1.9.1 GO:0005509 ... Q46444 11714714
    25745 1kb0:A (1.44) BS03 TFB 1.1.9.1 GO:0005509 ... Q46444 11714714
    25746 1kb0:A (1.44) BS04 PQQ 1.1.9.1 GO:0005509 ... Q46444 11714714
    25747 1kb2:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25748 1kb2:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25749 1kb2:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25750 1kb2:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25751 1kb2:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25752 1kb2:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25753 1kb2:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25754 1kb2:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25755 1kb3:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    25756 1kb4:A (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    25757 1kb4:A (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    25758 1kb4:A (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    25759 1kb4:A (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    25760 1kb4:B (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    25761 1kb4:B (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    25762 1kb4:B (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    25763 1kb4:B (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    25764 1kb6:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25765 1kb6:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25766 1kb6:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25767 1kb6:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25768 1kb6:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25769 1kb6:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25770 1kb6:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25771 1kb6:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25772 1kb9:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    25773 1kb9:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    25774 1kb9:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11726495
    25775 1kb9:C (2.3) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 11726495
    25776 1kb9:C (2.3) BS05 PIE 7.1.1.8 GO:0005739 ... P00163 11726495
    25777 1kb9:C (2.3) BS06 CDL 7.1.1.8 GO:0005739 ... P00163 11726495
    25778 1kb9:D (2.3) BS01 PIE 7.1.1.8 GO:0009055 ... P07143 11726495
    25779 1kb9:D (2.3) BS02 CDL 7.1.1.8 GO:0009055 ... P07143 11726495
    25780 1kb9:D (2.3) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 11726495
    25781 1kb9:E (2.3) BS01 PIE 7.1.1.8 GO:0008121 ... P08067 11726495
    25782 1kb9:E (2.3) BS02 FES 7.1.1.8 GO:0008121 ... P08067 11726495
    25783 1kbb:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    25784 1kbc:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25785 1kbc:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25786 1kbc:A (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25787 1kbc:A (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25788 1kbc:A (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    25789 1kbc:A (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    25790 1kbc:B (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25791 1kbc:B (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25792 1kbc:B (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25793 1kbc:B (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25794 1kbc:B (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    25795 1kbc:B (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    25796 1kbe:A (-1.00) BS01 ZN 2.7.11.1 N/A Q61097 11786023
    25797 1kbe:A (-1.00) BS02 ZN 2.7.11.1 N/A Q61097 11786023
    25798 1kbf:A (-1.00) BS01 ZN 2.7.11.1 N/A Q61097 11786023
    25799 1kbf:A (-1.00) BS02 ZN 2.7.11.1 N/A Q61097 11786023
    25800 1kbg:H (2.2) BS01 peptide ? N/A P01901 10023770
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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