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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25401 1k78:A (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    25402 1k78:A (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    25403 1k78:B (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    25404 1k78:B (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    25405 1k78:E (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    25406 1k78:E (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    25407 1k78:F (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    25408 1k78:F (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    25409 1k78:I (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    25410 1k78:I (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    25411 1k79:A (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    25412 1k79:A (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    25413 1k79:D (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    25414 1k79:D (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    25415 1k7a:A (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    25416 1k7a:A (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    25417 1k7a:D (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    25418 1k7a:D (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    25419 1k7d:A (2.15) BS01 GRO 3.5.1.11 GO:0016787 ... P06875 15254299
    25420 1k7d:B (2.15) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    25421 1k7d:B (2.15) BS02 GRO 3.5.1.11 GO:0016787 ... P06875 15254299 MOAD: Ki=0.47mM
    25422 1k7e:A (2.3) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756456
    25423 1k7e:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    25424 1k7f:A (1.9) BS01 IAV 4.2.1.20 GO:0000162 ... P00929 11756456
    25425 1k7f:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    25426 1k7g:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25427 1k7g:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25428 1k7g:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25429 1k7g:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25430 1k7g:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25431 1k7g:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25432 1k7g:A (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    25433 1k7g:A (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25434 1k7h:A (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25435 1k7h:A (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25436 1k7h:A (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25437 1k7h:B (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25438 1k7h:B (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25439 1k7h:B (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25440 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25441 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25442 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25443 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25444 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25445 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25446 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    25447 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25448 1k7l:A (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25449 1k7l:A (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25450 1k7l:C (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25451 1k7l:C (2.5) BS02 peptide ? GO:0003677 ... Q07869 11698662
    25452 1k7l:C (2.5) BS03 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25453 1k7l:E (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25454 1k7l:E (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25455 1k7l:G (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25456 1k7l:G (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25457 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25458 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25459 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25460 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25461 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25462 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25463 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    25464 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25465 1k7s:N (2.6) BS01 ALB ? GO:0005515 ... P07822 11805094
    25466 1k7w:A (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25467 1k7w:A (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25468 1k7w:B (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25469 1k7w:B (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25470 1k7w:C (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25471 1k7w:C (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25472 1k7w:D (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25473 1k7w:D (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25474 1k7x:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    25475 1k7y:A (3.0) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    25476 1k81:A (-1.00) BS01 ZN ? GO:0003743 ... Q57562 11980477
    25477 1k82:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25478 1k82:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25479 1k82:A (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25480 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25481 1k82:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25482 1k82:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25483 1k82:B (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25484 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25485 1k82:C (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25486 1k82:C (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25487 1k82:C (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25488 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25489 1k82:D (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25490 1k82:D (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25491 1k82:D (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25492 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25493 1k83:A (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P04050 11805306
    25494 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    25495 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    25496 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    25497 1k83:B (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P08518 11805306
    25498 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 11805306
    25499 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    25500 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    25501 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    25502 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11805306
    25503 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11805306
    25504 1k8a:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    25505 1k8a:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    25506 1k8a:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    25507 1k8a:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    25508 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    25509 1k8a:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    25510 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    25511 1k8a:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    25512 1k8a:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    25513 1k8a:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    25514 1k8a:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    25515 1k8a:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    25516 1k8a:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    25517 1k8a:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    25518 1k8a:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    25519 1k8a:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    25520 1k8a:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    25521 1k8a:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    25522 1k8a:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    25523 1k8a:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    25524 1k8a:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    25525 1k8a:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    25526 1k8a:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    25527 1k8a:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    25528 1k8a:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    25529 1k8a:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    25530 1k8a:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    25531 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    25532 1k8a:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    25533 1k8a:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    25534 1k8a:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    25535 1k8a:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    25536 1k8a:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    25537 1k8a:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    25538 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    25539 1k8c:A (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25540 1k8c:B (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25541 1k8c:C (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25542 1k8c:D (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25543 1k8d:A (2.3) BS01 peptide ? N/A P14429 11738047
    25544 1k8g:A (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    25545 1k8g:B (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    25546 1k8q:A (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    25547 1k8q:B (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    25548 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    25549 1k8r:A (3.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 11709168
    25550 1k8w:A (1.85) BS01 rna 5.4.99.25 GO:0000049 ... P60340 11779468
    25551 1k8x:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    25552 1k8y:B (1.5) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    25553 1k8z:A (1.7) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756454
    25554 1k8z:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    25555 1k90:A (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    25556 1k90:B (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    25557 1k90:C (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    25558 1k90:D (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25559 1k90:D (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25560 1k90:E (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25561 1k90:E (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25562 1k90:F (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25563 1k90:F (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25564 1k93:D (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25565 1k93:D (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25566 1k93:E (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25567 1k93:E (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25568 1k93:F (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25569 1k93:F (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25570 1k94:A (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    25571 1k94:A (1.7) BS02 CA ? GO:0005509 ... P28676 11717497
    25572 1k94:B (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    25573 1k96:A (1.44) BS01 CA ? GO:0001726 ... P06703 11937060
    25574 1k96:A (1.44) BS02 CA ? GO:0001726 ... P06703 11937060
    25575 1k97:A (2.0) BS01 ASP 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    25576 1k97:A (2.0) BS02 CIR 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    25577 1k98:A (3.75) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    25578 1k9e:A (1.85) BS01 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    25579 1k9f:A (1.75) BS01 XYP 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    25580 1k9f:A (1.75) BS02 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    25581 1k9i:A (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25582 1k9i:A (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25583 1k9i:A (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25584 1k9i:A (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25585 1k9i:A (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25586 1k9i:B (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25587 1k9i:B (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25588 1k9i:B (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25589 1k9i:C (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25590 1k9i:C (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25591 1k9i:C (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25592 1k9i:C (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25593 1k9i:C (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25594 1k9i:D (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25595 1k9i:D (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25596 1k9i:D (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25597 1k9i:D (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25598 1k9i:D (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25599 1k9i:E (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25600 1k9i:E (2.5) BS02 CA ? N/A Q9NNX6 11739956
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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