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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24801 1jz5:D (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24802 1jz5:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24803 1jz5:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24804 1jz6:A (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24805 1jz6:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24806 1jz6:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24807 1jz6:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24808 1jz6:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24809 1jz6:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24810 1jz6:A (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24811 1jz6:B (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24812 1jz6:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24813 1jz6:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24814 1jz6:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24815 1jz6:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24816 1jz6:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24817 1jz6:B (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24818 1jz6:C (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24819 1jz6:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24820 1jz6:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24821 1jz6:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24822 1jz6:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24823 1jz6:C (2.1) BS06 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24824 1jz6:D (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24825 1jz6:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24826 1jz6:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24827 1jz6:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24828 1jz6:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24829 1jz6:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24830 1jz7:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24831 1jz7:A (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24832 1jz7:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24833 1jz7:A (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24834 1jz7:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24835 1jz7:B (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24836 1jz7:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24837 1jz7:B (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24838 1jz7:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24839 1jz7:C (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24840 1jz7:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24841 1jz7:C (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24842 1jz7:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24843 1jz7:D (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24844 1jz7:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24845 1jz7:D (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24846 1jz8:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24847 1jz8:A (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24848 1jz8:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24849 1jz8:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24850 1jz8:B (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24851 1jz8:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24852 1jz8:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24853 1jz8:C (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24854 1jz8:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24855 1jz8:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24856 1jz8:D (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24857 1jz8:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24858 1jze:A (1.6) BS01 CU ? GO:0005507 ... P00282 11716717
    24859 1jze:A (1.6) BS02 DRU ? GO:0005507 ... P00282 11716717
    24860 1jze:A (1.6) BS03 LRU ? GO:0005507 ... P00282 11716717
    24861 1jzf:A (1.5) BS01 CU ? GO:0005507 ... P00282 11716717
    24862 1jzf:A (1.5) BS02 RTB ? GO:0005507 ... P00282 11716717
    24863 1jzf:A (1.5) BS03 IME ? GO:0005507 ... P00282 11716717
    24864 1jzg:A (1.4) BS01 CU1 ? GO:0005507 ... P00282 11716717
    24865 1jzg:A (1.4) BS02 RTB ? GO:0005507 ... P00282 11716717
    24866 1jzg:A (1.4) BS03 IMF ? GO:0005507 ... P00282 11716717
    24867 1jzh:A (1.7) BS01 CU ? GO:0005507 ... P00282 11716717
    24868 1jzh:A (1.7) BS02 RTA ? GO:0005507 ... P00282 11716717
    24869 1jzi:A (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    24870 1jzi:A (1.62) BS02 REP ? GO:0005507 ... P00282 11716717
    24871 1jzi:A (1.62) BS03 IME ? GO:0005507 ... P00282 11716717
    24872 1jzi:B (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    24873 1jzi:B (1.62) BS02 REP ? GO:0005507 ... P00282 11716717
    24874 1jzj:A (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    24875 1jzj:A (1.8) BS02 DOS ? GO:0005507 ... P00282 11716717
    24876 1jzj:A (1.8) BS03 IME ? GO:0005507 ... P00282 11716717
    24877 1jzj:B (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    24878 1jzj:B (1.8) BS02 DOS ? GO:0005507 ... P00282 11716717
    24879 1jzj:B (1.8) BS03 LOS ? GO:0005507 ... P00282 11716717
    24880 1jzk:A (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    24881 1jzk:A (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    24882 1jzk:B (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    24883 1jzk:C (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    24884 1jzk:C (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    24885 1jzk:D (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    24886 1jzk:D (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    24887 1jzl:A (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    24888 1jzl:A (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    24889 1jzl:B (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    24890 1jzl:B (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    24891 1jzm:A (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    24892 1jzm:A (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    24893 1jzm:B (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    24894 1jzm:B (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    24895 1jzn:A (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    24896 1jzn:A (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    24897 1jzn:B (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    24898 1jzn:B (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    24899 1jzn:C (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    24900 1jzn:C (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    24901 1jzn:D (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    24902 1jzn:D (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    24903 1jzn:E (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    24904 1jzn:E (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    24905 1jzq:A (3.0) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    24906 1jzq:A (3.0) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    24907 1jzq:A (3.0) BS03 ILA 6.1.1.5 GO:0000049 ... P56690 11584022
    24908 1jzr:A (2.9) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24909 1jzr:C (2.9) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24910 1jzs:A (2.5) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    24911 1jzs:A (2.5) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    24912 1jzs:A (2.5) BS03 MRC 6.1.1.5 GO:0000049 ... P56690 11584022 MOAD: Ki=0.25uM
    PDBbind: -logKd/Ki=6.60, Ki=0.25uM
    24913 1jzw:A (1.76) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    24914 1jzw:A (1.76) BS02 SO3 1.20.4.1 GO:0008794 ... P08692 11709171
    24915 1jzx:K (3.1) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    24916 1jzx:L (3.1) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    24917 1jzx:M (3.1) BS01 rna ? GO:0003735 ... P49228 11677599
    24918 1jzy:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    24919 1jzy:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    24920 1jzy:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599
    24921 1jzz:K (3.8) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    24922 1jzz:L (3.8) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    24923 1jzz:M (3.8) BS01 rna ? GO:0003735 ... P49228 11677599
    24924 1k01:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    24925 1k01:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    24926 1k01:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599
    24927 1k02:A (2.7) BS01 FMN 1.6.99.1 GO:0003959 ... Q02899 11668181
    24928 1k03:A (2.7) BS01 FMN 1.6.99.1 GO:0003959 ... Q02899 11668181
    24929 1k03:A (2.7) BS02 HBA 1.6.99.1 GO:0003959 ... Q02899 11668181 PDBbind: -logKd/Ki=6.00, Kd=1uM
    24930 1k06:A (1.8) BS01 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    24931 1k06:A (1.8) BS02 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    24932 1k06:A (1.8) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 11895439
    24933 1k07:A (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    24934 1k07:A (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    24935 1k07:B (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    24936 1k07:B (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    24937 1k08:A (2.26) BS01 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    24938 1k08:A (2.26) BS02 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    24939 1k08:A (2.26) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 11895439
    24940 1k0a:A (2.5) BS01 GTX 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24941 1k0a:B (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24942 1k0b:A (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24943 1k0b:C (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24944 1k0c:A (2.5) BS01 GTB 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24945 1k0c:B (2.5) BS01 GTB 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24946 1k0c:C (2.5) BS01 GTB 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24947 1k0c:D (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24948 1k0d:A (2.2) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24949 1k0d:B (2.2) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24950 1k0d:C (2.2) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    24951 1k0e:A (2.0) BS01 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    24952 1k0e:B (2.0) BS01 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    24953 1k0g:A (2.05) BS01 PO4 2.6.1.85 GO:0000162 ... P05041 11841211
    24954 1k0g:A (2.05) BS02 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    24955 1k0g:B (2.05) BS01 PO4 2.6.1.85 GO:0000162 ... P05041 11841211
    24956 1k0g:B (2.05) BS02 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    24957 1k0i:A (1.8) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 11805318
    24958 1k0j:A (2.2) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 11805318
    24959 1k0j:A (2.2) BS02 NDP 1.14.13.2 GO:0004497 ... P20586 11805318 MOAD: Ki=1.1mM
    24960 1k0l:A (2.0) BS01 SO3 1.14.13.2 GO:0004497 ... P20586 11805318
    24961 1k0l:A (2.0) BS02 FAD 1.14.13.2 GO:0004497 ... P20586 11805318
    24962 1k0n:A (1.8) BS01 GSH ? GO:0005254 ... O00299 11551966
    24963 1k0t:A (-1.00) BS01 SF4 1.97.1.12 GO:0009055 ... P31087 11941504
    24964 1k0t:A (-1.00) BS02 SF4 1.97.1.12 GO:0009055 ... P31087 11941504
    24965 1k0u:A (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24966 1k0u:A (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24967 1k0u:A (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24968 1k0u:B (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24969 1k0u:B (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24970 1k0u:B (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24971 1k0u:C (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24972 1k0u:C (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24973 1k0u:C (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24974 1k0u:D (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24975 1k0u:D (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24976 1k0u:D (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24977 1k0u:E (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24978 1k0u:E (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24979 1k0u:E (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24980 1k0u:F (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24981 1k0u:F (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24982 1k0u:F (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24983 1k0u:G (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24984 1k0u:G (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24985 1k0u:G (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24986 1k0u:H (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24987 1k0u:H (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    24988 1k0u:H (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    24989 1k0v:A (-1.00) BS01 CU1 ? GO:0005507 ... O32221 11747441
    24990 1k0w:A (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    24991 1k0w:B (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    24992 1k0w:C (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    24993 1k0w:D (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    24994 1k0w:E (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    24995 1k0w:F (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    24996 1k0y:A (1.87) BS01 HEM ? GO:0004601 ... P69905 11914488
    24997 1k0y:A (1.87) BS02 CNO ? GO:0004601 ... P69905 11914488
    24998 1k0y:A (1.87) BS03 CNO ? GO:0004601 ... P69905 11914488
    24999 1k0y:B (1.87) BS01 HEM ? GO:0004601 ... P68871 11914488
    25000 1k0y:B (1.87) BS02 CNO ? GO:0004601 ... P68871 11914488

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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