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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24201 1jrx:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24202 1jrx:B (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    24203 1jrx:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24204 1jry:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24205 1jry:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24206 1jry:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24207 1jry:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24208 1jry:A (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    24209 1jry:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24210 1jry:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24211 1jry:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24212 1jry:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24213 1jry:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24214 1jry:B (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    24215 1jry:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24216 1jrz:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24217 1jrz:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24218 1jrz:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24219 1jrz:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24220 1jrz:A (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    24221 1jrz:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24222 1jrz:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24223 1jrz:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24224 1jrz:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24225 1jrz:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24226 1jrz:B (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    24227 1jrz:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    24228 1js1:X (2.0) BS01 PO4 2.1.3.11 GO:0004585 ... Q8A1E9 12095263
    24229 1js1:Y (2.0) BS01 PO4 2.1.3.11 GO:0004585 ... Q8A1E9 12095263
    24230 1js2:A (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    24231 1js2:B (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    24232 1js2:C (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    24233 1js2:D (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    24234 1js3:A (2.25) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    24235 1js3:A (2.25) BS02 142 4.1.1.28 GO:0004058 ... P80041 11685243
    24236 1js3:B (2.25) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    24237 1js3:B (2.25) BS02 142 4.1.1.28 GO:0004058 ... P80041 11685243
    24238 1js4:A (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    24239 1js4:A (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    24240 1js4:A (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    24241 1js4:A (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    24242 1js4:A (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    24243 1js4:B (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    24244 1js4:B (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    24245 1js4:B (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    24246 1js4:B (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    24247 1js4:B (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    24248 1js6:A (2.6) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    24249 1js6:B (2.6) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    24250 1js8:A (2.3) BS01 MAN ? GO:0016491 ... O61363 9614947
    24251 1js8:A (2.3) BS02 MAN ? GO:0016491 ... O61363 9614947
    24252 1js8:A (2.3) BS03 CUO ? GO:0016491 ... O61363 9614947
    24253 1js8:B (2.3) BS01 MAN ? GO:0016491 ... O61363 9614947
    24254 1js8:B (2.3) BS02 MAN ? GO:0016491 ... O61363 9614947
    24255 1js8:B (2.3) BS03 CUO ? GO:0016491 ... O61363 9614947
    24256 1jsa:A (-1.00) BS01 CA ? GO:0001750 ... P21457 9296500
    24257 1jsa:A (-1.00) BS02 CA ? GO:0001750 ... P21457 9296500
    24258 1jsc:A (2.6) BS01 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    24259 1jsc:A (2.6) BS02 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    24260 1jsc:A (2.6) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    24261 1jsc:A (2.6) BS04 FAD 2.2.1.6 GO:0000287 ... P07342 11902841
    24262 1jsc:A (2.6) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    24263 1jsc:B (2.6) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    24264 1jsc:B (2.6) BS02 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    24265 1jsc:B (2.6) BS03 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    24266 1jsc:B (2.6) BS04 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    24267 1jsc:B (2.6) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    24268 1jsc:B (2.6) BS06 FAD 2.2.1.6 GO:0000287 ... P07342 11902841
    24269 1jse:A (1.12) BS01 POL 3.2.1.17 GO:0003796 ... P00703 9517539
    24270 1jsh:A (2.4) BS01 GAL ? GO:0019031 ... Q91CD4 11562490
    24271 1jsh:A (2.4) BS02 SIA ? GO:0019031 ... Q91CD4 11562490
    24272 1jsi:A (2.4) BS01 GLC ? GO:0019031 ... Q91CD4 11562490
    24273 1jsi:A (2.4) BS02 GAL ? GO:0019031 ... Q91CD4 11562490
    24274 1jsi:A (2.4) BS03 SIA ? GO:0019031 ... Q91CD4 11562490
    24275 1jsl:A (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24276 1jsl:B (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24277 1jsl:C (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24278 1jsl:D (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24279 1jsn:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    24280 1jso:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    24281 1jsp:B (-1.00) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 14759370
    24282 1jsr:A (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24283 1jsr:B (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24284 1jsr:C (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24285 1jsr:D (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    24286 1jst:A (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    24287 1jst:A (2.6) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8756328
    24288 1jst:C (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    24289 1jst:C (2.6) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8756328
    24290 1jsv:A (1.96) BS01 U55 2.7.11.22 GO:0000082 ... P24941 11604388 PDBbind: -logKd/Ki=5.70, Ki=2uM
    BindingDB: IC50=1900nM
    24291 1jsz:A (1.93) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    24292 1jsz:A (1.93) BS02 NDM 2.1.1.57 GO:0003723 ... P07617 12056899
    24293 1jt0:A (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24294 1jt0:A (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24295 1jt0:B (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24296 1jt0:B (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24297 1jt0:C (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24298 1jt0:C (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24299 1jt0:D (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24300 1jt0:D (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    24301 1jt1:A (1.78) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    24302 1jt1:A (1.78) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    24303 1jt1:A (1.78) BS03 MCO 3.5.2.6 N/A Q9K578 12507470 MOAD: Ki=400uM
    PDBbind: -logKd/Ki=3.40, Ki=400uM
    24304 1jt2:A (1.8) BS01 FER 3.2.1.8 N/A P10478 11601976
    24305 1jt6:A (2.54) BS01 DEQ ? GO:0003677 ... P0A0N4 11739955
    24306 1jt6:B (2.54) BS01 DEQ ? GO:0003677 ... P0A0N4 11739955
    24307 1jtb:A (-1.00) BS01 COA ? GO:0006869 ... P07597 9032083
    24308 1jtb:A (-1.00) BS02 PLM ? GO:0006869 ... P07597 9032083
    24309 1jtd:B (2.3) BS01 CA ? GO:0005737 ... O87916 11573088
    24310 1jtd:B (2.3) BS02 CA ? GO:0005737 ... O87916 11573088
    24311 1jte:A (2.0) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    24312 1jtf:A (2.6) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    24313 1jtf:A (2.6) BS02 M7G 2.1.1.57 GO:0003723 ... P07617 12056899
    24314 1jtg:B (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    24315 1jtg:D (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    24316 1jtk:A (2.04) BS01 ZN 3.5.4.5 GO:0003824 ... P19079 11851403
    24317 1jtk:A (2.04) BS02 THU 3.5.4.5 GO:0003824 ... P19079 11851403
    24318 1jtk:B (2.04) BS01 ZN 3.5.4.5 GO:0003824 ... P19079 11851403
    24319 1jtk:B (2.04) BS02 THU 3.5.4.5 GO:0003824 ... P19079 11851403
    24320 1jtq:A (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24321 1jtq:A (2.5) BS02 LY3 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    24322 1jtq:A (2.5) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24323 1jtq:B (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24324 1jtq:B (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24325 1jtq:B (2.5) BS03 LY3 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    24326 1jtu:A (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24327 1jtu:A (2.2) BS02 LYB 2.1.1.45 GO:0000287 ... P0A884 11697906
    24328 1jtu:A (2.2) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24329 1jtu:B (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24330 1jtu:B (2.2) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24331 1jtu:B (2.2) BS03 LYB 2.1.1.45 GO:0000287 ... P0A884 11697906
    24332 1jtv:A (1.54) BS01 TES 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 12490543
    24333 1jtx:A (2.85) BS01 CVI ? GO:0003677 ... P0A0N4 11739955
    24334 1jty:A (2.97) BS01 ET ? GO:0003677 ... P0A0N4 11739955
    24335 1ju2:A (1.47) BS01 FAD 4.1.2.10 GO:0016614 ... Q945K2 11566130
    24336 1ju2:B (1.47) BS01 FAD 4.1.2.10 GO:0016614 ... Q945K2 11566130
    24337 1ju3:A (1.58) BS01 PBC 3.1.1.84 GO:0005737 ... Q9L9D7 11742345
    24338 1ju5:A (-1.00) BS01 peptide ? N/A P46108 12384576
    24339 1ju6:A (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24340 1ju6:A (2.89) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    24341 1ju6:A (2.89) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24342 1ju6:B (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24343 1ju6:B (2.89) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24344 1ju6:B (2.89) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    24345 1ju6:C (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24346 1ju6:C (2.89) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    24347 1ju6:C (2.89) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24348 1ju6:D (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24349 1ju6:D (2.89) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24350 1ju6:D (2.89) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    24351 1ju9:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    24352 1ju9:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    24353 1ju9:A (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11601993 MOAD: Ki=1640uM
    24354 1ju9:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    24355 1ju9:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    24356 1ju9:B (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11601993 MOAD: Ki=1640uM
    24357 1jub:A (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24358 1jub:A (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24359 1jub:B (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24360 1jub:B (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24361 1jue:A (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24362 1jue:A (1.8) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24363 1jue:B (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24364 1jue:B (1.8) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    24365 1juf:A (2.0) BS01 peptide ? N/A P01899 11751972
    24366 1jug:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P37156 15299900
    24367 1juh:A (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    24368 1juh:B (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    24369 1juh:C (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    24370 1juh:D (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    24371 1jui:A (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24372 1jui:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24373 1jui:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24374 1jui:B (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24375 1jui:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24376 1jui:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24377 1jui:C (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24378 1jui:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24379 1jui:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24380 1jui:D (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24381 1jui:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24382 1jui:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24383 1juj:A (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24384 1juj:A (3.0) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 PDBbind: -logKd/Ki=6.96, Ki=109nM
    BindingDB: IC50=9500nM, Ki=1.3nM
    24385 1juj:A (3.0) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24386 1juj:B (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24387 1juj:B (3.0) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24388 1juj:B (3.0) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 PDBbind: -logKd/Ki=6.96, Ki=109nM
    BindingDB: IC50=9500nM, Ki=1.3nM
    24389 1juj:C (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24390 1juj:C (3.0) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    24391 1juj:C (3.0) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24392 1juj:D (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24393 1juj:D (3.0) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    24394 1juj:D (3.0) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    24395 1juk:A (2.5) BS01 SO4 4.1.1.48 GO:0000162 ... Q06121 8893859
    24396 1jum:A (2.98) BS01 BER ? GO:0003677 ... P0A0N4 11739955
    24397 1jup:A (2.95) BS01 MGR ? GO:0003677 ... P0A0N4 11739955
    24398 1juq:A (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24399 1juq:B (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24400 1juq:C (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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