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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23801 1jll:D (2.69) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 11781092
    23802 1jll:E (2.69) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    23803 1jll:E (2.69) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    23804 1jlm:A (2.0) BS01 MN ? N/A P11215 8747460
    23805 1jlq:A (3.0) BS01 SBN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 11384233 PDBbind: -logKd/Ki=8.15, IC50=0.007uM
    23806 1jlr:A (2.45) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23807 1jlr:A (2.45) BS02 GTP 2.4.2.9 GO:0004845 ... Q26998 11773618 MOAD: Kd=465uM
    23808 1jlr:B (2.45) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23809 1jlr:B (2.45) BS02 GTP 2.4.2.9 GO:0004845 ... Q26998 11773618 MOAD: Kd=465uM
    23810 1jlr:B (2.45) BS03 GTP 2.4.2.9 GO:0004845 ... Q26998 11773618 MOAD: Kd=465uM
    23811 1jlr:C (2.45) BS01 GTP 2.4.2.9 GO:0004845 ... Q26998 11773618 MOAD: Kd=465uM
    23812 1jlr:D (2.45) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23813 1jlr:D (2.45) BS02 GTP 2.4.2.9 GO:0004845 ... Q26998 11773618 MOAD: Kd=465uM
    23814 1jls:A (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23815 1jls:A (2.5) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23816 1jls:A (2.5) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    23817 1jls:B (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23818 1jls:B (2.5) BS02 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    23819 1jls:B (2.5) BS03 PRP 2.4.2.9 GO:0004845 ... Q26998 11773618
    23820 1jls:C (2.5) BS01 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    23821 1jls:D (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23822 1jls:D (2.5) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 11773618
    23823 1jls:D (2.5) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    23824 1jlu:E (2.25) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 8003955
    23825 1jlv:A (1.75) BS01 GSH 2.5.1.18 GO:0003824 ... Q7KIF2 11604524
    23826 1jlv:B (1.75) BS01 GSH 2.5.1.18 GO:0003824 ... Q7KIF2 11604524
    23827 1jlv:C (1.75) BS01 GSH 2.5.1.18 GO:0003824 ... Q7KIF2 11604524
    23828 1jlv:D (1.75) BS01 GSH 2.5.1.18 GO:0003824 ... Q7KIF2 11604524
    23829 1jlv:E (1.75) BS01 GSH 2.5.1.18 GO:0003824 ... Q7KIF2 11604524
    23830 1jlv:F (1.75) BS01 GSH 2.5.1.18 GO:0003824 ... Q7KIF2 11604524
    23831 1jlx:A (2.2) BS01 GAL ? N/A Q71QF2 9334739 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    23832 1jlx:B (2.2) BS01 GAL ? N/A Q71QF2 9334739 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    23833 1jm1:A (1.11) BS01 FES ? GO:0016020 ... Q53766 12054871
    23834 1jm4:B (-1.00) BS01 peptide 2.3.1.48
    2.3.1.57
    GO:0004402 ... Q92831 11931765
    23835 1jm6:A (2.5) BS01 ADP 2.7.11.2 GO:0004672 ... Q64536 11483605
    23836 1jm6:B (2.5) BS01 ADP 2.7.11.2 GO:0004672 ... Q64536 11483605
    23837 1jm7:A (-1.00) BS01 ZN 2.3.2.27 GO:0006281 ... P38398 11573085
    23838 1jm7:B (-1.00) BS01 ZN 2.3.2.27 GO:0003697 ... Q99728 11573085
    23839 1jm7:B (-1.00) BS02 ZN 2.3.2.27 GO:0003697 ... Q99728 11573085
    23840 1jma:A (2.65) BS01 SO4 ? GO:0016020 ... P57083 11511370
    23841 1jmc:A (2.4) BS01 dna ? GO:0003676 ... P27694 8990123
    23842 1jme:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695889
    23843 1jme:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695889
    23844 1jmf:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    23845 1jmg:A (2.2) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716 MOAD: Kd=0.85uM
    PDBbind: -logKd/Ki=6.07, Kd=0.85uM
    23846 1jmh:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716
    23847 1jmi:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716 MOAD: Kd=0.87uM
    PDBbind: -logKd/Ki=6.06, Kd=0.87uM
    23848 1jmj:A (2.35) BS01 CA ? GO:0004866 ... P05546 12169660
    23849 1jml:A (1.9) BS01 ZN ? N/A Q51912 11526208
    23850 1jml:A (1.9) BS02 ZN ? N/A Q51912 11526208
    23851 1jml:A (1.9) BS03 ZN ? N/A Q51912 11526208
    23852 1jmq:A (-1.00) BS01 peptide ? N/A P46937 11743730
    23853 1jms:A (2.36) BS01 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 11823435
    23854 1jmt:A (2.2) BS01 peptide ? GO:0000398 ... Q01081 11551507
    23855 1jmu:G (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    23856 1jmu:H (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    23857 1jmu:I (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    23858 1jmx:A (1.9) BS01 HEC ? GO:0009055 ... Q8VW85 11704672
    23859 1jmx:A (1.9) BS02 HEC ? GO:0009055 ... Q8VW85 11704672
    23860 1jmx:B (1.9) BS01 HEC ? N/A Q8VW82 11704672
    23861 1jmz:A (2.0) BS01 HEC ? GO:0009055 ... Q8VW85 11704672
    23862 1jmz:A (2.0) BS02 HEC ? GO:0009055 ... Q8VW85 11704672
    23863 1jmz:B (2.0) BS01 HEC ? N/A Q8VW82 11704672
    23864 1jmz:B (2.0) BS02 PND ? N/A Q8VW82 11704672
    23865 1jmz:G (2.0) BS01 PND 1.4.9.- GO:0016491 ... P0A182 11704672
    23866 1jn0:A (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    23867 1jn0:B (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    23868 1jn0:O (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    23869 1jn1:A (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    23870 1jn1:B (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    23871 1jn1:C (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    23872 1jn1:C (2.9) BS02 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    23873 1jn2:P (1.9) BS01 CA ? GO:0030246 ... P02866 11504727
    23874 1jn2:P (1.9) BS02 MN ? GO:0030246 ... P02866 11504727
    23875 1jn2:P (1.9) BS03 SFP ? GO:0030246 ... P02866 11504727 MOAD: Ka=12200M^-1
    PDBbind: -logKd/Ki=4.09, Kd=82uM
    23876 1jn4:A (1.8) BS01 139 4.6.1.18 GO:0003676 ... P61823 11513604 MOAD: Ki=11.3uM
    PDBbind: -logKd/Ki=4.95, Ki=11.3uM
    23877 1jn5:B (2.8) BS01 peptide ? GO:0005634 ... Q9UBU9 11583626
    23878 1jn7:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 12110675
    23879 1jn9:A (2.3) BS01 CA 3.4.19.5 GO:0016787 ... P37595 18323626
    23880 1jne:A (1.7) BS01 MAN ? GO:0005576 ... Q9V3D4 11821393
    23881 1jnf:A (2.6) BS01 CO3 ? GO:0005576 ... P19134 11752780
    23882 1jnf:A (2.6) BS02 CO3 ? GO:0005576 ... P19134 11752780
    23883 1jnf:A (2.6) BS03 FE ? GO:0005576 ... P19134 11752780
    23884 1jnf:A (2.6) BS04 FE ? GO:0005576 ... P19134 11752780
    23885 1jnh:A (2.85) BS01 ECO ? GO:0003823 ... P01843 11812141
    23886 1jnh:E (2.85) BS01 ECO ? GO:0003823 ... P01843 11812141
    23887 1jni:A (1.25) BS01 HEC ? GO:0009061 ... P44654 11939777
    23888 1jni:A (1.25) BS02 HEC ? GO:0009061 ... P44654 11939777
    23889 1jnk:A (2.3) BS01 ANP 2.7.11.24 GO:0000165 ... P53779 9739089
    23890 1jnm:A (2.2) BS01 dna ? GO:0003677 ... P05412 N/A
    23891 1jnm:A (2.2) BS02 dna ? GO:0003677 ... P05412 N/A
    23892 1jnm:B (2.2) BS01 dna ? GO:0003677 ... P05412 N/A
    23893 1jnm:B (2.2) BS02 dna ? GO:0003677 ... P05412 N/A
    23894 1jnn:H (3.2) BS01 EST ? N/A Q99LC4 11812141
    23895 1jnn:L (3.2) BS01 EST ? N/A Q7TS98 11812141
    23896 1jnq:A (2.1) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 12964012
    23897 1jnq:A (2.1) BS02 EGT 1.13.11.58 GO:0005737 ... P09186 12964012
    23898 1jnr:A (1.6) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    23899 1jnr:B (1.6) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23900 1jnr:B (1.6) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23901 1jnr:C (1.6) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    23902 1jnr:D (1.6) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23903 1jnr:D (1.6) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23904 1jnu:A (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    23905 1jnu:B (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    23906 1jnu:C (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    23907 1jnu:D (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    23908 1jnw:A (2.07) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11786019
    23909 1jnw:A (2.07) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11786019
    23910 1jnw:A (2.07) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11786019
    23911 1jny:A (1.8) BS01 GDP ? GO:0003746 ... P35021 11574461
    23912 1jny:B (1.8) BS01 GDP ? GO:0003746 ... P35021 11574461
    23913 1jnz:A (2.5) BS01 SO3 1.8.99.2 GO:0000104 ... O28603 11842205
    23914 1jnz:A (2.5) BS02 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    23915 1jnz:B (2.5) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23916 1jnz:B (2.5) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23917 1jnz:C (2.5) BS01 SO3 1.8.99.2 GO:0000104 ... O28603 11842205
    23918 1jnz:C (2.5) BS02 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    23919 1jnz:D (2.5) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23920 1jnz:D (2.5) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    23921 1joa:A (2.8) BS01 FAD 1.11.1.1 GO:0004601 ... P37062 8756456
    23922 1job:A (2.4) BS01 ZN ? GO:0005634 ... Q64288 12054872
    23923 1job:A (2.4) BS02 ZN ? GO:0005634 ... Q64288 12054872
    23924 1joc:A (2.2) BS01 ZN ? GO:0046872 ... Q15075 11741531
    23925 1joc:A (2.2) BS02 ZN ? GO:0046872 ... Q15075 11741531
    23926 1joc:A (2.2) BS03 ITP ? GO:0046872 ... Q15075 11741531 MOAD: Kd=24uM
    PDBbind: -logKd/Ki=4.62, Kd=24uM
    23927 1joc:B (2.2) BS01 ZN ? GO:0046872 ... Q15075 11741531
    23928 1joc:B (2.2) BS02 ZN ? GO:0046872 ... Q15075 11741531
    23929 1joc:B (2.2) BS03 ITP ? GO:0046872 ... Q15075 11741531 MOAD: Kd=24uM
    PDBbind: -logKd/Ki=4.62, Kd=24uM
    23930 1jod:A (3.2) BS01 ZN ? GO:0005634 ... Q64288 12054872
    23931 1jod:B (3.2) BS01 ZN ? GO:0005634 ... Q64288 12054872
    23932 1jod:B (3.2) BS02 ZN ? GO:0005634 ... Q64288 12054872
    23933 1joe:A (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    23934 1joe:B (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    23935 1joe:C (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    23936 1joe:D (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    23937 1jof:B (2.5) BS01 PIN 5.5.1.5 GO:0016853 ... P38677 11937053
    23938 1jof:H (2.5) BS01 PIN 5.5.1.5 GO:0016853 ... P38677 11937053
    23939 1joi:A (2.05) BS01 CU ? GO:0005507 ... P80546 8109977
    23940 1joj:A (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    23941 1joj:A (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    23942 1joj:A (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    23943 1joj:B (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    23944 1joj:B (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    23945 1joj:B (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    23946 1joj:C (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    23947 1joj:C (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    23948 1joj:C (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    23949 1joj:D (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    23950 1joj:D (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    23951 1joj:D (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    23952 1jok:A (-1.00) BS01 THP 3.1.31.1 GO:0003676 ... P00644 9369015
    23953 1jol:A (1.96) BS01 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    23954 1jol:B (1.96) BS01 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    23955 1jom:A (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    23956 1jom:A (1.9) BS02 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    23957 1joq:A (-1.00) BS01 THP 3.1.31.1 GO:0003676 ... P00644 9369015
    23958 1jot:A (2.2) BS01 peptide ? GO:0030246 ... P18674 9497359
    23959 1jou:B (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    23960 1jou:D (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    23961 1jou:F (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    23962 1jp3:A (1.8) BS01 EGC 2.5.1.31 GO:0000287 ... P60472 11581264
    23963 1jp4:A (1.69) BS01 PO4 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    23964 1jp4:A (1.69) BS02 MG 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    23965 1jp4:A (1.69) BS03 MG 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    23966 1jp4:A (1.69) BS04 AMP 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    23967 1jp6:A (2.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    23968 1jp7:A (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    23969 1jp7:B (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    23970 1jp7:C (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    23971 1jp8:A (2.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    23972 1jp9:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    23973 1jpa:A (1.91) BS01 ANP 2.7.10.1 GO:0004672 ... P54763 11572780
    23974 1jpa:B (1.91) BS01 ANP 2.7.10.1 GO:0004672 ... P54763 11572780
    23975 1jpb:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    23976 1jpc:A (2.0) BS01 MAN ? N/A P30617 8939757
    23977 1jpc:A (2.0) BS02 MAN ? N/A P30617 8939757
    23978 1jpc:A (2.0) BS03 MAN ? N/A P30617 8939757
    23979 1jpc:A (2.0) BS04 MAN ? N/A P30617 8939757
    23980 1jpc:A (2.0) BS05 MAN ? N/A P30617 8939757
    23981 1jpf:A (2.18) BS01 peptide ? N/A P01899 11580250
    23982 1jpg:A (2.2) BS01 peptide ? N/A P01899 11580250
    23983 1jpj:A (2.3) BS01 GNP 3.6.5.4 GO:0003924 ... O07347 11566135
    23984 1jpl:A (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23985 1jpl:B (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23986 1jpl:C (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23987 1jpl:D (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23988 1jpm:A (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    23989 1jpm:B (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    23990 1jpm:C (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    23991 1jpm:D (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    23992 1jpn:A (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... O07347 11566135
    23993 1jpn:B (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... O07347 11566135
    23994 1jpp:A (3.1) BS01 peptide ? GO:0007155 ... Q02248 11707392
    23995 1jpp:B (3.1) BS01 peptide ? GO:0007155 ... Q02248 11707392
    23996 1jpr:A (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    23997 1jpr:A (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    23998 1jpr:B (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    23999 1jpr:B (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    24000 1jpu:A (1.8) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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