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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23401 1jh0:M (3.5) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23402 1jh0:M (3.5) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23403 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23404 1jh0:M (3.5) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23405 1jh0:M (3.5) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23406 1jh0:M (3.5) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23407 1jh0:M (3.5) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23408 1jh0:M (3.5) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23409 1jh1:A (2.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    23410 1jh1:A (2.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    23411 1jh1:A (2.7) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    23412 1jh1:A (2.7) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    23413 1jh1:A (2.7) BS05 JST 3.4.24.34 GO:0004222 ... P22894 11563922 PDBbind: -logKd/Ki=4.39, Ki=41uM
    23414 1jh4:A (-1.00) BS01 peptide ? GO:0003723 ... P11940 14685257
    23415 1jh7:A (2.4) BS01 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    23416 1jh7:A (2.4) BS02 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    23417 1jh8:A (1.8) BS01 ADE 2.4.2.21 GO:0000166 ... Q05603 11441022
    23418 1jh9:A (2.55) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2nM
    23419 1jh9:A (2.55) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    23420 1jha:A (2.0) BS01 AAM 2.4.2.21 GO:0000166 ... Q05603 11441022
    23421 1jha:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23422 1jhd:A (1.7) BS01 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    23423 1jhd:A (1.7) BS02 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    23424 1jhd:A (1.7) BS03 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    23425 1jhg:A (1.3) BS01 TRP ? GO:0003677 ... P0A881 8946848
    23426 1jhm:A (2.2) BS01 5MB 2.4.2.21 GO:0000166 ... Q05603 11441022
    23427 1jhn:A (2.9) BS01 CA ? GO:0005509 ... P24643 11583625
    23428 1jho:A (2.0) BS01 RMB 2.4.2.21 GO:0000166 ... Q05603 11441022
    23429 1jho:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23430 1jhp:A (2.2) BS01 5OB 2.4.2.21 GO:0000166 ... Q05603 11441022
    23431 1jhq:A (2.0) BS01 PMO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23432 1jhq:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23433 1jhr:A (2.0) BS01 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23434 1jhr:A (2.0) BS02 P2P 2.4.2.21 GO:0000166 ... Q05603 11441022
    23435 1jht:A (2.15) BS01 peptide ? N/A P04439 11544315
    23436 1jhu:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    23437 1jhv:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    23438 1jhv:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23439 1jhx:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    23440 1jhy:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    23441 1jhy:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23442 1ji0:A (2.0) BS01 ATP ? GO:0005524 ... Q9X0M3 N/A
    23443 1ji1:A (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23444 1ji1:A (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23445 1ji1:A (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23446 1ji1:B (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23447 1ji1:B (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23448 1ji1:B (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23449 1ji2:A (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    23450 1ji2:B (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    23451 1ji3:A (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23452 1ji3:A (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23453 1ji3:B (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23454 1ji3:B (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23455 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23456 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23457 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23458 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23459 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23460 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23461 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23462 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23463 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23464 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23465 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23466 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23467 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23468 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23469 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23470 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23471 1ji4:I (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23472 1ji4:I (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23473 1ji4:J (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23474 1ji4:J (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23475 1ji4:K (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23476 1ji4:K (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23477 1ji4:L (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23478 1ji4:L (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23479 1ji5:A (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23480 1ji5:B (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23481 1ji5:C (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23482 1ji5:D (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23483 1jia:A (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    23484 1jia:B (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    23485 1jib:A (3.3) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23486 1jib:A (3.3) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23487 1jib:A (3.3) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23488 1jib:B (3.3) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23489 1jib:B (3.3) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23490 1jib:B (3.3) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23491 1jib:B (3.3) BS04 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23492 1jid:A (1.8) BS01 rna ? GO:0006614 ... P09132 11641499
    23493 1jie:A (1.8) BS01 BLM ? GO:0046677 ... Q53793 11706014
    23494 1jie:A (1.8) BS02 BLM ? GO:0046677 ... Q53793 11706014
    23495 1jie:B (1.8) BS01 BLM ? GO:0046677 ... Q53793 11706014
    23496 1jie:B (1.8) BS02 BLM ? GO:0046677 ... Q53793 11706014
    23497 1jif:A (1.6) BS01 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23498 1jif:A (1.6) BS02 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23499 1jif:B (1.6) BS01 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23500 1jif:B (1.6) BS02 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23501 1jig:A (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23502 1jig:A (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23503 1jig:B (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23504 1jig:B (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23505 1jig:C (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23506 1jig:C (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23507 1jig:D (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23508 1jig:D (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23509 1jii:A (3.2) BS01 383 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=9.00, IC50=1nM
    23510 1jij:A (3.2) BS01 629 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=8.52, IC50=3nM
    23511 1jik:A (2.8) BS01 545 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    23512 1jil:A (2.2) BS01 485 6.1.1.1 GO:0000166 ... A6QHR2 11567092 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    23513 1jim:A (2.31) BS01 ICU 3.4.21.36 GO:0004252 ... P00772 N/A
    23514 1jin:A (2.3) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    23515 1jin:A (2.3) BS02 KTN 1.14.15.35 GO:0004497 ... Q00441 11469860
    23516 1jio:A (2.1) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    23517 1jio:A (2.1) BS02 DEB 1.14.15.35 GO:0004497 ... Q00441 11469860
    23518 1jip:A (2.0) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    23519 1jip:A (2.0) BS02 KTN 1.14.15.35 GO:0004497 ... Q00441 11469860
    23520 1jir:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    23521 1jir:A (2.0) BS02 AML 3.4.21.4 GO:0004175 ... P00760 N/A
    23522 1jir:A (2.0) BS03 AML 3.4.21.4 GO:0004175 ... P00760 N/A
    23523 1jiu:A (2.5) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23524 1jiv:A (2.07) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23525 1jiw:P (1.74) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 11445573
    23526 1jiw:P (1.74) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23527 1jiw:P (1.74) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23528 1jiw:P (1.74) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23529 1jiw:P (1.74) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23530 1jiw:P (1.74) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23531 1jiw:P (1.74) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23532 1jiw:P (1.74) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23533 1jiw:P (1.74) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23534 1jix:A (1.65) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23535 1jiz:A (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23536 1jiz:A (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23537 1jiz:A (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23538 1jiz:A (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23539 1jiz:A (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23540 1jiz:A (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929 PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    23541 1jiz:B (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23542 1jiz:B (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23543 1jiz:B (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23544 1jiz:B (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23545 1jiz:B (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23546 1jiz:B (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929
    23547 1jj0:A (1.9) BS01 GLC 3.2.1.17 GO:0003796 ... P00698 11679726
    23548 1jj0:A (1.9) BS02 FRU 3.2.1.17 GO:0003796 ... P00698 11679726
    23549 1jj2:1 (2.4) BS01 rna ? GO:0003735 ... P22452 11483524
    23550 1jj2:2 (2.4) BS01 rna ? GO:0000049 ... P32411 11483524
    23551 1jj2:2 (2.4) BS02 MG ? GO:0000049 ... P32411 11483524
    23552 1jj2:A (2.4) BS01 rna ? GO:0002181 ... P20276 11483524
    23553 1jj2:A (2.4) BS02 MG ? GO:0002181 ... P20276 11483524
    23554 1jj2:B (2.4) BS01 rna ? GO:0003723 ... P20279 11483524
    23555 1jj2:C (2.4) BS01 rna ? GO:0003723 ... P12735 11483524
    23556 1jj2:D (2.4) BS01 rna ? GO:0000049 ... P14124 11483524
    23557 1jj2:D (2.4) BS02 rna ? GO:0000049 ... P14124 11483524
    23558 1jj2:E (2.4) BS01 rna ? GO:0002181 ... P14135 11483524
    23559 1jj2:F (2.4) BS01 rna ? GO:0001682 ... P12743 11483524
    23560 1jj2:H (2.4) BS01 rna ? GO:0000027 ... P60617 11483524
    23561 1jj2:I (2.4) BS01 rna ? GO:0003729 ... P29198 11483524
    23562 1jj2:J (2.4) BS01 rna ? GO:0003735 ... P22450 11483524
    23563 1jj2:K (2.4) BS01 rna ? GO:0003735 ... P12737 11483524
    23564 1jj2:L (2.4) BS01 rna ? GO:0002181 ... P60618 11483524
    23565 1jj2:M (2.4) BS01 rna ? GO:0000027 ... P14123 11483524
    23566 1jj2:M (2.4) BS02 rna ? GO:0000027 ... P14123 11483524
    23567 1jj2:N (2.4) BS01 rna ? GO:0003723 ... P12733 11483524
    23568 1jj2:O (2.4) BS01 rna ? GO:0003723 ... P14119 11483524
    23569 1jj2:P (2.4) BS01 rna ? GO:0003735 ... P12734 11483524
    23570 1jj2:P (2.4) BS02 rna ? GO:0003735 ... P12734 11483524
    23571 1jj2:Q (2.4) BS01 rna ? GO:0002181 ... P10970 11483524
    23572 1jj2:R (2.4) BS01 rna ? GO:0000027 ... P12732 11483524
    23573 1jj2:S (2.4) BS01 rna ? GO:0002181 ... P10972 11483524
    23574 1jj2:S (2.4) BS02 MG ? GO:0002181 ... P10972 11483524
    23575 1jj2:T (2.4) BS01 rna ? GO:0003735 ... P14116 11483524
    23576 1jj2:U (2.4) BS01 rna ? GO:0003735 ... P10971 11483524
    23577 1jj2:V (2.4) BS01 rna ? GO:0000463 ... P14121 11483524
    23578 1jj2:V (2.4) BS02 rna ? GO:0000463 ... P14121 11483524
    23579 1jj2:W (2.4) BS01 rna ? GO:0002181 ... P18138 11483524
    23580 1jj2:X (2.4) BS01 rna ? GO:0000166 ... P12736 11483524
    23581 1jj2:X (2.4) BS02 MG ? GO:0000166 ... P12736 11483524
    23582 1jj2:Y (2.4) BS01 rna ? GO:0003735 ... P60619 11483524
    23583 1jj2:Z (2.4) BS01 rna ? GO:0003723 ... P32410 11483524
    23584 1jj4:A (2.4) BS01 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23585 1jj4:A (2.4) BS02 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23586 1jj4:B (2.4) BS01 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23587 1jj4:B (2.4) BS02 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23588 1jj6:C (2.3) BS01 dna ? GO:0000150 ... P03013 11847127
    23589 1jj6:C (2.3) BS02 dna ? GO:0000150 ... P03013 11847127
    23590 1jj7:A (2.4) BS01 ADP 7.4.2.14 GO:0005524 ... Q03518 11532960
    23591 1jj8:C (2.75) BS01 dna ? GO:0000150 ... P03013 11847127
    23592 1jj8:C (2.75) BS02 dna ? GO:0000150 ... P03013 11847127
    23593 1jj9:A (2.0) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    23594 1jj9:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    23595 1jj9:A (2.0) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    23596 1jj9:A (2.0) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    23597 1jj9:A (2.0) BS05 BBT 3.4.24.34 GO:0004222 ... P22894 11278347 MOAD: ic50=1700nM
    PDBbind: -logKd/Ki=5.77, IC50=1.7uM
    BindingDB: IC50=1700nM
    23598 1jjb:A (2.3) BS01 PE7 3.1.1.7 GO:0001507 ... P04058 12095250
    23599 1jjc:A (2.6) BS01 FA5 6.1.1.20 GO:0000049 ... Q5SGX2 11679717
    23600 1jjc:B (2.6) BS01 SO4 6.1.1.20 GO:0000049 ... Q5SGX1 11679717

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218