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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22801 1jaf:B (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    22802 1jah:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9102473
    22803 1jai:A (1.8) BS01 MN 3.6.5.2 GO:0003924 ... P01112 9102473
    22804 1jak:A (1.75) BS01 CL 3.2.1.52 GO:0004553 ... O85361 11522797
    22805 1jak:A (1.75) BS02 IFG 3.2.1.52 GO:0004553 ... O85361 11522797 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    22806 1jan:A (2.5) BS01 peptide 3.4.24.34 GO:0004222 ... P22894 8307185
    22807 1jan:A (2.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    22808 1jan:A (2.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    22809 1jan:A (2.5) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    22810 1jan:A (2.5) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    22811 1jao:A (2.4) BS01 0D3 3.4.24.34 GO:0004222 ... P22894 7737183 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    22812 1jao:A (2.4) BS02 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    22813 1jao:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    22814 1jao:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    22815 1jao:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    22816 1jap:A (1.82) BS01 peptide 3.4.24.34 GO:0004222 ... P22894 8137810
    22817 1jap:A (1.82) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    22818 1jap:A (1.82) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    22819 1jap:A (1.82) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    22820 1jap:A (1.82) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    22821 1jaq:A (2.4) BS01 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    22822 1jaq:A (2.4) BS02 01S 3.4.24.34 GO:0004222 ... P22894 7737183 MOAD: Ki=33uM
    PDBbind: -logKd/Ki=4.48, Ki=33uM
    BindingDB: Ki=121000nM
    22823 1jaq:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    22824 1jaq:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    22825 1jaq:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    22826 1jaw:A (2.7) BS01 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    22827 1jaw:A (2.7) BS02 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    22828 1jay:A (1.65) BS01 NAP 1.5.1.40 GO:0000166 ... O29370 11726492
    22829 1jay:A (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    22830 1jay:B (1.65) BS01 NAP 1.5.1.40 GO:0000166 ... O29370 11726492
    22831 1jay:B (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    22832 1jaz:A (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    22833 1jaz:B (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    22834 1jb0:A (2.5) BS01 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22835 1jb0:A (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22836 1jb0:A (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22837 1jb0:A (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22838 1jb0:A (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22839 1jb0:A (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22840 1jb0:A (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22841 1jb0:A (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22842 1jb0:A (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22843 1jb0:A (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22844 1jb0:A (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22845 1jb0:A (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22846 1jb0:A (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22847 1jb0:A (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22848 1jb0:A (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22849 1jb0:A (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22850 1jb0:A (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22851 1jb0:A (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22852 1jb0:A (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22853 1jb0:A (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22854 1jb0:A (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22855 1jb0:A (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22856 1jb0:A (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22857 1jb0:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22858 1jb0:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22859 1jb0:A (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22860 1jb0:A (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22861 1jb0:A (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22862 1jb0:A (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22863 1jb0:A (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22864 1jb0:A (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22865 1jb0:A (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22866 1jb0:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22867 1jb0:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22868 1jb0:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22869 1jb0:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22870 1jb0:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22871 1jb0:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22872 1jb0:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22873 1jb0:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22874 1jb0:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22875 1jb0:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22876 1jb0:A (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22877 1jb0:A (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22878 1jb0:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22879 1jb0:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22880 1jb0:A (2.5) BS47 PQN 1.97.1.12 GO:0000287 ... P0A405 11418848
    22881 1jb0:A (2.5) BS48 SF4 1.97.1.12 GO:0000287 ... P0A405 11418848
    22882 1jb0:A (2.5) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22883 1jb0:A (2.5) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22884 1jb0:A (2.5) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22885 1jb0:A (2.5) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22886 1jb0:B (2.5) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 11418848
    22887 1jb0:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22888 1jb0:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22889 1jb0:B (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22890 1jb0:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22891 1jb0:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22892 1jb0:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22893 1jb0:B (2.5) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 11418848
    22894 1jb0:B (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22895 1jb0:B (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22896 1jb0:B (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22897 1jb0:B (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22898 1jb0:B (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22899 1jb0:B (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22900 1jb0:B (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22901 1jb0:B (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22902 1jb0:B (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22903 1jb0:B (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22904 1jb0:B (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22905 1jb0:B (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22906 1jb0:B (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22907 1jb0:B (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22908 1jb0:B (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22909 1jb0:B (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22910 1jb0:B (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22911 1jb0:B (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22912 1jb0:B (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22913 1jb0:B (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22914 1jb0:B (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22915 1jb0:B (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22916 1jb0:B (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22917 1jb0:B (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22918 1jb0:B (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22919 1jb0:B (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22920 1jb0:B (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22921 1jb0:B (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22922 1jb0:B (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22923 1jb0:B (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22924 1jb0:B (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22925 1jb0:B (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22926 1jb0:B (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22927 1jb0:B (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22928 1jb0:B (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22929 1jb0:B (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22930 1jb0:B (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22931 1jb0:B (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22932 1jb0:B (2.5) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22933 1jb0:B (2.5) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22934 1jb0:B (2.5) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 11418848
    22935 1jb0:C (2.5) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    22936 1jb0:C (2.5) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    22937 1jb0:F (2.5) BS01 CLA ? GO:0009522 ... P0A401 11418848
    22938 1jb0:F (2.5) BS02 CLA ? GO:0009522 ... P0A401 11418848
    22939 1jb0:F (2.5) BS03 CLA ? GO:0009522 ... P0A401 11418848
    22940 1jb0:F (2.5) BS04 CLA ? GO:0009522 ... P0A401 11418848
    22941 1jb0:I (2.5) BS01 CLA ? GO:0009522 ... P0A427 11418848
    22942 1jb0:I (2.5) BS02 CLA ? GO:0009522 ... P0A427 11418848
    22943 1jb0:I (2.5) BS03 CLA ? GO:0009522 ... P0A427 11418848
    22944 1jb0:I (2.5) BS04 CLA ? GO:0009522 ... P0A427 11418848
    22945 1jb0:J (2.5) BS01 CLA ? GO:0009522 ... P0A429 11418848
    22946 1jb0:J (2.5) BS02 CLA ? GO:0009522 ... P0A429 11418848
    22947 1jb0:J (2.5) BS03 CLA ? GO:0009522 ... P0A429 11418848
    22948 1jb0:J (2.5) BS04 CLA ? GO:0009522 ... P0A429 11418848
    22949 1jb0:J (2.5) BS05 CLA ? GO:0009522 ... P0A429 11418848
    22950 1jb0:J (2.5) BS06 CLA ? GO:0009522 ... P0A429 11418848
    22951 1jb0:K (2.5) BS01 CLA ? GO:0009522 ... P0A425 11418848
    22952 1jb0:L (2.5) BS01 CLA ? GO:0009522 ... Q8DGB4 11418848
    22953 1jb0:L (2.5) BS02 CLA ? GO:0009522 ... Q8DGB4 11418848
    22954 1jb0:L (2.5) BS03 CLA ? GO:0009522 ... Q8DGB4 11418848
    22955 1jb0:L (2.5) BS04 CA ? GO:0009522 ... Q8DGB4 11418848
    22956 1jb0:L (2.5) BS05 CLA ? GO:0009522 ... Q8DGB4 11418848
    22957 1jb0:L (2.5) BS06 CLA ? GO:0009522 ... Q8DGB4 11418848
    22958 1jb0:L (2.5) BS07 CLA ? GO:0009522 ... Q8DGB4 11418848
    22959 1jb0:M (2.5) BS01 CLA ? GO:0009522 ... P0A403 11418848
    22960 1jb0:M (2.5) BS02 CLA ? GO:0009522 ... P0A403 11418848
    22961 1jb7:A (1.86) BS01 dna ? GO:0000723 ... P29549 11428895
    22962 1jb7:A (1.86) BS02 dna ? GO:0000723 ... P29549 11428895
    22963 1jb7:B (1.86) BS01 dna ? GO:0000781 ... P16458 11428895
    22964 1jb9:A (1.7) BS01 FAD 1.18.1.2 GO:0000166 ... Q41736 11724563
    22965 1jba:A (-1.00) BS01 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    22966 1jba:A (-1.00) BS02 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    22967 1jba:A (-1.00) BS03 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    22968 1jbc:A (1.15) BS01 MN ? GO:0030246 ... P02866 15299577
    22969 1jbc:A (1.15) BS02 CA ? GO:0030246 ... P02866 15299577
    22970 1jbd:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11814338
    22971 1jbp:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 8003955
    22972 1jbp:E (2.2) BS02 ADP 2.7.11.11 GO:0000122 ... P05132 8003955
    22973 1jbq:A (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22974 1jbq:A (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22975 1jbq:B (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22976 1jbq:B (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22977 1jbq:C (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22978 1jbq:C (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22979 1jbq:D (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22980 1jbq:D (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22981 1jbq:E (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22982 1jbq:E (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22983 1jbq:F (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22984 1jbq:F (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22985 1jbr:A (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    22986 1jbr:B (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    22987 1jbs:A (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22988 1jbs:B (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22989 1jbt:A (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22990 1jbt:B (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22991 1jbu:H (2.0) BS01 peptide 3.4.21.21 GO:0004252 ... P08709 11470437
    22992 1jbv:A (1.95) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    22993 1jbv:A (1.95) BS02 ACP 6.3.2.17 GO:0004326 ... P15925 11501996
    22994 1jbw:A (1.85) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    22995 1jbw:A (1.85) BS02 ACQ 6.3.2.17 GO:0004326 ... P15925 11501996
    22996 1jbw:A (1.85) BS03 TMF 6.3.2.17 GO:0004326 ... P15925 11501996
    22997 1jbz:A (1.5) BS01 MG ? GO:0003674 ... P42212 12501176
    22998 1jc2:A (-1.00) BS01 CA ? GO:0005509 ... P02588 11513585
    22999 1jc2:A (-1.00) BS02 CA ? GO:0005509 ... P02588 11513585
    23000 1jc9:A (2.01) BS01 CA ? GO:0005576 ... Q9U8W8 11707569

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218