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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22601 1j70:A (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    22602 1j70:B (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    22603 1j70:C (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    22604 1j71:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... Q00663 9335526
    22605 1j73:B (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    22606 1j73:D (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    22607 1j75:A (1.85) BS01 dna ? GO:0003677 ... Q9QY24 11524677 PDBbind: Kd=35nM
    22608 1j77:A (1.5) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 11560504
    22609 1j78:B (2.31) BS01 VDY ? GO:0003779 ... P02774 11799400
    22610 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22611 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22612 1j79:A (1.7) BS03 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    22613 1j79:B (1.7) BS01 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    22614 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22615 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22616 1j79:B (1.7) BS04 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    22617 1j7a:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    22618 1j7b:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    22619 1j7c:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    22620 1j7e:A (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    22621 1j7e:B (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    22622 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    22623 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    22624 1j7k:A (1.8) BS01 ATP 3.6.4.12 GO:0000400 ... Q56313 11478862
    22625 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22626 1j7l:A (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22627 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22628 1j7l:B (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22629 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    22630 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    22631 1j7o:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    22632 1j7o:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    22633 1j7p:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    22634 1j7p:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    22635 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    22636 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    22637 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    22638 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    22639 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22640 1j7u:A (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22641 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22642 1j7u:B (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22643 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    22644 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    22645 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    22646 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    22647 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    22648 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    22649 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    22650 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    22651 1j7z:B (2.25) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22652 1j80:B (2.1) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22653 1j81:B (2.2) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22654 1j82:B (2.3) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22655 1j83:A (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    22656 1j83:B (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    22657 1j84:A (2.02) BS01 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22658 1j84:A (2.02) BS02 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22659 1j84:A (2.02) BS03 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22660 1j84:A (2.02) BS04 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22661 1j84:A (2.02) BS05 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    22662 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    22663 1j8e:A (1.85) BS01 CA ? N/A Q07954 11735395
    22664 1j8f:A (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    22665 1j8f:B (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    22666 1j8f:C (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    22667 1j8h:A (2.4) BS01 peptide ? GO:0006955 ... P01903 11877480
    22668 1j8h:B (2.4) BS01 peptide ? GO:0006955 ... P01911 11877480
    22669 1j8h:D (2.4) BS01 peptide ? N/A P01848 11877480
    22670 1j8h:E (2.4) BS01 peptide ? N/A P01850 11877480
    22671 1j8q:A (1.35) BS01 FMN ? GO:0009055 ... P00323 12351822
    22672 1j8r:A (1.8) BS01 GAL ? GO:0007155 ... Q47450 11440716
    22673 1j8r:A (1.8) BS02 GLA ? GO:0007155 ... Q47450 11440716
    22674 1j8t:A (1.7) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    22675 1j8u:A (1.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    22676 1j8u:A (1.5) BS02 H4B 1.14.16.1 GO:0004497 ... P00439 11718561
    22677 1j8v:A (2.4) BS01 LAM 3.2.1.21 GO:0004553 ... Q9XEI3 12034895 MOAD: Ki=243.2uM
    22678 1j90:A (2.56) BS01 DCZ 2.7.1.145 GO:0004136 ... Q9XZT6 11427893
    22679 1j90:B (2.56) BS01 DCZ 2.7.1.145 GO:0004136 ... Q9XZT6 11427893
    22680 1j91:A (2.22) BS01 TBS 2.7.11.1 GO:0004672 ... P28523 11604527
    22681 1j91:B (2.22) BS01 TBS 2.7.11.1 GO:0004672 ... P28523 11604527
    22682 1j96:A (1.25) BS01 NAP 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    22683 1j96:A (1.25) BS02 TES 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    22684 1j96:B (1.25) BS01 NAP 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    22685 1j96:B (1.25) BS02 TES 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    22686 1j97:A (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    22687 1j97:B (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    22688 1j97:B (1.5) BS02 PO4 3.1.3.3 GO:0000287 ... Q58989 11438683
    22689 1j97:B (1.5) BS03 PO4 3.1.3.3 GO:0000287 ... Q58989 11438683
    22690 1j98:A (1.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    22691 1j99:A (1.99) BS01 HGI 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 11988089
    22692 1j99:A (1.99) BS02 HGI 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 11988089
    22693 1j99:A (1.99) BS03 AND 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 11988089
    22694 1j9b:A (1.26) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    22695 1j9b:A (1.26) BS02 TAS 1.20.4.1 GO:0008794 ... P08692 11709171
    22696 1j9b:A (1.26) BS03 TAS 1.20.4.1 GO:0008794 ... P08692 11709171
    22697 1j9c:H (2.9) BS01 0Z6 3.4.21.21 GO:0004252 ... P08709 N/A
    22698 1j9c:H (2.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    22699 1j9c:L (2.9) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 N/A
    22700 1j9c:L (2.9) BS02 FUL 3.4.21.21 GO:0005509 ... P08709 N/A
    22701 1j9e:A (1.44) BS01 FMN ? GO:0009055 ... P00323 12351822
    22702 1j9g:A (2.4) BS01 FMN ? GO:0009055 ... P00323 12351822
    22703 1j9j:A (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    22704 1j9j:B (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    22705 1j9k:A (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    22706 1j9k:A (2.1) BS02 WO4 3.1.3.5 GO:0000166 ... P96112 11524683
    22707 1j9k:B (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    22708 1j9k:B (2.1) BS02 WO4 3.1.3.5 GO:0000166 ... P96112 11524683
    22709 1j9l:A (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    22710 1j9l:A (1.9) BS02 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    22711 1j9l:A (1.9) BS03 VO4 3.1.3.5 GO:0000166 ... P96112 11524683
    22712 1j9l:B (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    22713 1j9l:B (1.9) BS02 VO4 3.1.3.5 GO:0000166 ... P96112 11524683
    22714 1j9q:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22715 1j9q:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22716 1j9q:A (1.65) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22717 1j9q:A (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22718 1j9q:B (1.65) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22719 1j9q:B (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22720 1j9q:B (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22721 1j9q:B (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22722 1j9q:C (1.65) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22723 1j9q:C (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22724 1j9q:C (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22725 1j9q:C (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22726 1j9r:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22727 1j9r:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22728 1j9r:A (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22729 1j9r:A (2.0) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22730 1j9r:B (2.0) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22731 1j9r:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22732 1j9r:B (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22733 1j9r:B (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22734 1j9r:B (2.0) BS05 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22735 1j9r:C (2.0) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22736 1j9r:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22737 1j9r:C (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22738 1j9r:C (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22739 1j9r:C (2.0) BS05 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22740 1j9s:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22741 1j9s:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22742 1j9s:A (1.9) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22743 1j9s:A (1.9) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22744 1j9s:B (1.9) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22745 1j9s:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22746 1j9s:B (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22747 1j9s:B (1.9) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22748 1j9s:C (1.9) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22749 1j9s:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22750 1j9s:C (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22751 1j9t:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22752 1j9t:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22753 1j9t:A (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22754 1j9t:B (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    22755 1j9t:B (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22756 1j9t:B (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22757 1j9t:B (1.95) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22758 1j9t:C (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22759 1j9t:C (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22760 1j9t:C (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    22761 1j9w:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    22762 1j9w:B (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    22763 1j9y:A (1.85) BS01 ZN 3.2.1.78 GO:0000272 ... P49424 11382747
    22764 1j9y:A (1.85) BS02 ZN 3.2.1.78 GO:0000272 ... P49424 11382747
    22765 1j9z:A (2.7) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    22766 1j9z:A (2.7) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    22767 1j9z:A (2.7) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    22768 1j9z:B (2.7) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    22769 1j9z:B (2.7) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    22770 1j9z:B (2.7) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    22771 1ja0:A (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    22772 1ja0:A (2.6) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    22773 1ja0:A (2.6) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    22774 1ja0:B (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    22775 1ja0:B (2.6) BS02 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    22776 1ja1:A (1.8) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    22777 1ja1:A (1.8) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    22778 1ja1:A (1.8) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    22779 1ja1:B (1.8) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    22780 1ja1:B (1.8) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    22781 1ja1:B (1.8) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    22782 1ja8:A (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    22783 1ja8:B (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    22784 1ja9:A (1.5) BS01 NDP ? GO:0000166 ... Q9HFV6 11467929
    22785 1ja9:A (1.5) BS02 PYQ ? GO:0000166 ... Q9HFV6 11467929 MOAD: Ki=420nM
    22786 1jac:A (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    22787 1jac:A (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    22788 1jac:A (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    22789 1jac:C (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    22790 1jac:C (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    22791 1jac:C (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    22792 1jac:E (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    22793 1jac:E (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    22794 1jac:E (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    22795 1jac:G (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    22796 1jac:G (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    22797 1jac:G (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    22798 1jae:A (1.65) BS01 CA 3.2.1.1 GO:0003824 ... P56634 9600843
    22799 1jae:A (1.65) BS02 CL 3.2.1.1 GO:0003824 ... P56634 9600843
    22800 1jaf:A (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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